Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.47031 * 2 1 4 4 C 1.34233 * 117.00010 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99879 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99822 * 179.97438 * 4 3 2 7 7 S 1.81398 * 109.46879 * 180.02562 * 6 4 3 8 8 C 1.76208 * 103.00062 * 180.02562 * 7 6 4 9 9 C 1.39337 * 120.04460 * 180.02562 * 8 7 6 10 10 N 1.32023 * 120.07903 * 180.02562 * 9 8 7 11 11 C 1.32087 * 120.18874 * 359.97438 * 10 9 8 12 12 C 1.39214 * 120.08526 * 0.02562 * 11 10 9 13 13 N 1.38810 * 120.03984 * 179.97438 * 12 11 10 14 14 C 1.36895 * 120.00011 * 359.97438 * 13 12 11 15 15 H 1.08002 * 120.00320 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99798 * 179.72356 * 14 13 12 17 17 N 1.31572 * 119.99783 * 180.27464 * 16 14 13 18 18 Si 1.86800 * 120.00209 * 0.27758 * 16 14 13 19 19 H 1.48498 * 109.47118 * 89.99559 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00079 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99700 * 18 16 14 22 22 N 1.32733 * 120.04066 * 0.27210 * 8 7 6 23 23 H 1.08997 * 109.46853 * 60.00388 * 1 2 3 24 24 H 1.09004 * 109.46825 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47280 * 300.00008 * 1 2 3 26 26 H 1.08997 * 109.47280 * 239.99992 * 2 1 3 27 27 H 1.08997 * 109.46853 * 119.99612 * 2 1 3 28 28 H 1.09005 * 109.47249 * 60.00249 * 6 4 3 29 29 H 1.09000 * 109.47732 * 300.00279 * 6 4 3 30 30 H 1.07993 * 119.95855 * 0.04684 * 9 8 7 31 31 H 1.08000 * 119.96286 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99686 * 179.97438 * 13 12 11 33 33 H 0.96996 * 119.99653 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 16 5.7322 2.8425 0.0001 8 6 6.2179 4.5363 0.0002 9 6 7.5696 4.8745 -0.0002 10 7 7.9343 6.1433 0.0004 11 6 7.0205 7.0970 0.0009 12 6 5.6679 6.7675 0.0013 13 7 4.7083 7.7706 0.0023 14 6 5.0918 9.0847 0.0034 15 1 6.1410 9.3411 0.0031 16 6 4.1322 10.0877 -0.0014 17 7 4.5008 11.3508 -0.0058 18 14 2.3176 9.6444 -0.0015 19 1 1.8353 9.5321 1.3985 20 1 1.5496 10.7020 -0.7064 21 1 2.1252 8.3464 -0.6969 22 7 5.2966 5.4918 0.0056 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.5843 3.4701 0.8895 29 1 3.5852 3.4691 -0.8904 30 1 8.3198 4.0977 -0.0013 31 1 7.3229 8.1338 0.0009 32 1 3.7661 7.5403 0.0022 33 1 3.8303 12.0516 -0.0087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -49.602323 kcal Electronic energy + Delta-G solvation = -18811.573636 eV Core-core repulsion = 15577.416279 eV Total energy + Delta-G solvation = -3234.157357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62899 -41.52891 -37.86774 -37.65075 -34.96159 -34.07845 -32.97375 -31.16673 -30.91254 -26.95759 -25.60009 -24.47432 -23.78086 -22.38206 -20.61408 -19.37950 -18.82776 -18.09234 -17.93418 -17.58998 -17.31713 -16.83358 -16.36885 -16.00665 -15.56916 -15.22376 -15.01044 -14.44813 -14.29728 -14.16944 -13.69866 -13.51823 -13.49069 -12.95577 -12.63654 -12.55611 -12.47594 -12.37994 -12.08225 -12.03247 -11.83090 -11.70246 -11.58883 -11.03860 -9.96122 -9.61168 -8.58437 -8.50306 -5.98373 0.03845 0.04481 0.49215 0.92551 0.94286 1.27496 1.31584 1.35479 1.64504 2.09862 2.56460 2.69430 3.16172 3.48890 3.75599 3.87403 3.90446 4.00459 4.03188 4.04152 4.26815 4.33608 4.54854 4.68400 4.77948 4.90995 5.08397 5.29013 5.34406 5.50101 5.71663 6.29469 6.45165 6.47569 6.95878 7.09516 7.33442 8.54280 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.004463 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.808940 B = 6272.034341 C = 8067.091572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.491 3.509 5 O -0.517 6.517 6 C -0.116 4.116 7 S 0.024 5.976 8 C 0.115 3.885 9 C -0.059 4.059 10 N -0.398 5.398 11 C -0.049 4.049 12 C 0.329 3.671 13 N -0.549 5.549 14 C -0.318 4.318 15 H 0.100 0.900 16 C 0.004 3.996 17 N -0.905 5.905 18 Si 0.946 3.054 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.249 1.249 22 N -0.547 5.547 23 H 0.067 0.933 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.181 0.819 31 H 0.154 0.846 32 H 0.389 0.611 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 -19.242 -0.009 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.334 3.666 5 O -0.406 6.406 6 C -0.265 4.265 7 S 0.260 5.740 8 C -0.141 4.141 9 C -0.227 4.227 10 N -0.111 5.111 11 C -0.223 4.223 12 C 0.082 3.918 13 N -0.160 5.160 14 C -0.448 4.448 15 H 0.118 0.882 16 C -0.200 4.200 17 N -0.541 5.541 18 Si 0.768 3.232 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.173 1.173 22 N -0.277 5.277 23 H 0.086 0.914 24 H 0.122 0.878 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.198 0.802 31 H 0.171 0.829 32 H 0.226 0.774 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.909 -20.019 -0.005 21.525 hybrid contribution -1.632 1.536 -0.012 2.241 sum -9.541 -18.483 -0.017 20.800 Atomic orbital electron populations 1.21850 0.90404 1.04542 1.03712 1.23421 0.97048 0.78421 1.03169 1.86504 1.22600 1.34560 1.83443 1.22560 0.81437 0.90616 0.72030 1.90700 1.60699 1.43132 1.46074 1.23168 0.96852 0.95303 1.11192 1.85778 1.00771 0.95867 1.91557 1.24199 0.93851 0.98725 0.97316 1.22869 0.93620 0.93920 1.12241 1.68038 1.36657 1.00820 1.05578 1.22735 0.88469 0.99567 1.11556 1.19047 0.89533 0.87099 0.96133 1.40784 1.05917 1.03193 1.66142 1.19331 0.96341 0.79620 1.49487 0.88249 1.25759 1.03749 0.94438 0.96013 1.69769 1.37019 1.00047 1.47250 0.85585 0.78258 0.79502 0.79850 1.18422 1.19325 1.17332 1.68153 1.35684 0.98877 1.25029 0.91359 0.87828 0.91357 0.90707 0.90702 0.84214 0.84269 0.80238 0.82910 0.77421 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 71.98 0.74 -0.74 16 2 C 0.05 0.81 6.19 71.98 0.45 1.26 16 3 O -0.35 -7.40 10.22 -51.44 -0.53 -7.93 16 4 C 0.49 11.76 7.98 71.23 0.57 12.33 16 5 O -0.52 -14.56 15.61 21.97 0.34 -14.22 16 6 C -0.12 -2.80 5.82 71.23 0.41 -2.39 16 7 S 0.02 0.66 21.06 -56.49 -1.19 -0.53 16 8 C 0.12 4.02 7.00 84.82 0.59 4.61 16 9 C -0.06 -2.09 10.98 84.93 0.93 -1.16 16 10 N -0.40 -16.28 10.48 -193.90 -2.03 -18.31 16 11 C -0.05 -2.15 10.48 84.89 0.89 -1.26 16 12 C 0.33 14.30 7.63 133.01 1.01 15.31 16 13 N -0.55 -24.56 5.24 -188.98 -0.99 -25.55 16 14 C -0.32 -15.98 10.03 84.04 0.84 -15.13 16 15 H 0.10 5.37 5.89 -2.91 -0.02 5.35 16 16 C 0.00 0.18 5.50 84.87 0.47 0.65 16 17 N -0.90 -48.39 13.97 21.65 0.30 -48.09 16 18 Si 0.95 36.94 27.74 68.60 1.90 38.85 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.25 -8.97 6.51 99.48 0.65 -8.33 16 22 N -0.55 -21.17 9.63 -188.98 -1.82 -22.99 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.18 5.23 8.06 -2.91 -0.02 5.20 16 31 H 0.15 6.94 5.94 -2.91 -0.02 6.92 16 32 H 0.39 16.13 5.87 -92.71 -0.54 15.59 16 33 H 0.29 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -58.94 307.62 3.45 -55.49 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.55 Total: 29.80 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.91 Total: 13.48 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.54 Total: -114.94 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.18 Total: -22.15 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 1.90 Total: 38.85 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.19 Total: -0.53 kcal Total: -58.94 3.45 -55.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.884 kcal (2) G-P(sol) polarization free energy of solvation -58.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds