Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86799 * 119.99715 * 2 1 4 4 H 1.48498 * 109.47113 * 239.99898 * 3 2 1 5 5 H 1.48497 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47083 * 120.00188 * 3 2 1 7 7 C 1.40048 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00646 * 186.35122 * 7 2 1 9 9 C 1.41277 * 120.00183 * 6.34837 * 7 2 1 10 10 C 1.40715 * 120.16185 * 173.87104 * 9 7 2 11 11 N 1.31902 * 119.93050 * 179.97438 * 10 9 7 12 12 C 1.32167 * 120.27251 * 359.72567 * 11 10 9 13 13 C 1.39914 * 120.31809 * 0.52676 * 12 11 10 14 14 N 1.38830 * 119.97031 * 179.74907 * 13 12 11 15 15 C 1.46822 * 111.00218 * 235.04186 * 14 13 12 16 16 C 1.53298 * 109.39905 * 189.75082 * 15 14 13 17 17 C 1.51435 * 108.24568 * 306.20794 * 16 15 14 18 18 O 1.20760 * 121.11374 * 229.30394 * 17 16 15 19 19 C 1.51436 * 117.77545 * 49.02528 * 17 16 15 20 20 F 1.39897 * 109.70961 * 70.66310 * 19 17 16 21 21 F 1.39901 * 109.70765 * 191.24896 * 19 17 16 22 22 C 1.46834 * 110.99678 * 359.72940 * 14 13 12 23 23 N 1.32266 * 120.06347 * 359.47913 * 13 12 11 24 24 H 0.97000 * 120.00205 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.03273 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.84142 * 180.26085 * 12 11 10 27 27 H 1.08994 * 109.48865 * 309.73176 * 15 14 13 28 28 H 1.09002 * 109.48424 * 69.75982 * 15 14 13 29 29 H 1.08998 * 109.70776 * 186.51996 * 16 15 14 30 30 H 1.08998 * 109.71179 * 65.89723 * 16 15 14 31 31 H 1.08997 * 109.48268 * 50.26514 * 22 14 13 32 32 H 1.09001 * 109.47896 * 290.22025 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6965 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0826 -1.2158 0.1029 9 6 1.3078 -2.4326 -0.1364 10 6 2.0145 -3.6424 -0.2668 11 7 1.3565 -4.7786 -0.3929 12 6 0.0349 -4.7868 -0.3918 13 6 -0.6788 -3.5898 -0.2680 14 7 -2.0670 -3.6063 -0.2730 15 6 -2.6001 -2.7145 -1.3103 16 6 -4.1155 -2.5707 -1.1285 17 6 -4.7230 -3.9575 -1.0972 18 8 -5.6770 -4.2364 -1.7830 19 6 -4.0901 -4.9847 -0.1821 20 9 -4.3568 -4.6565 1.1514 21 9 -4.6063 -6.2531 -0.4682 22 6 -2.5763 -4.9751 -0.4241 23 7 -0.0322 -2.4430 -0.1410 24 1 -0.4850 0.8400 0.0004 25 1 3.0944 -3.6405 -0.2638 26 1 -0.4968 -5.7216 -0.4912 27 1 -2.1292 -1.7352 -1.2251 28 1 -2.3900 -3.1345 -2.2940 29 1 -4.5335 -2.0049 -1.9611 30 1 -4.3261 -2.0559 -0.1911 31 1 -2.0881 -5.6267 0.3006 32 1 -2.3671 -5.3315 -1.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166975446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = -67.872485 kcal Electronic energy + Delta-G solvation = -22442.156285 eV Core-core repulsion = 18653.366288 eV Total energy + Delta-G solvation = -3788.789997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.07579 -47.11394 -40.13289 -39.25574 -37.23385 -34.18732 -32.39970 -31.73174 -30.32297 -28.71127 -26.17886 -24.25925 -23.75898 -22.01347 -21.34175 -19.78577 -18.03166 -17.59688 -17.25962 -16.92888 -15.94559 -15.88617 -15.53996 -15.06319 -14.96891 -14.77203 -13.99972 -13.93491 -13.83145 -13.56849 -13.40570 -13.21828 -12.81819 -12.41770 -12.06675 -11.83590 -11.68889 -11.50246 -11.43746 -11.12056 -10.88016 -10.55986 -10.03914 -9.81639 -9.68500 -9.62075 -8.67689 -7.72778 -7.34594 -6.65819 -4.86581 1.33221 2.30181 2.81260 2.94256 2.95638 2.99877 3.06764 3.43516 3.73407 3.93166 4.28756 4.41100 4.50996 4.70565 4.96391 5.19527 5.22405 5.41736 5.44324 5.61013 5.78390 5.90070 5.92995 6.12240 6.26394 6.50727 6.74074 6.84562 6.88028 7.14678 7.22354 7.60354 7.89038 8.28544 8.50912 9.11166 9.65605 9.96815 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.005411 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.033633 B = 5173.002752 C = 6011.436897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.093 0.907 9 C 0.226 3.774 10 C -0.078 4.078 11 N -0.412 5.412 12 C -0.163 4.163 13 C 0.290 3.710 14 N -0.467 5.467 15 C 0.065 3.935 16 C -0.156 4.156 17 C 0.335 3.665 18 O -0.415 6.415 19 C 0.256 3.744 20 F -0.169 7.169 21 F -0.182 7.182 22 C 0.022 3.978 23 N -0.462 5.462 24 H 0.279 0.721 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.044 0.956 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -0.822 -1.805 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.436 4.436 8 H 0.111 0.889 9 C 0.099 3.901 10 C -0.249 4.249 11 N -0.124 5.124 12 C -0.323 4.323 13 C 0.048 3.952 14 N -0.186 5.186 15 C -0.061 4.061 16 C -0.193 4.193 17 C 0.206 3.794 18 O -0.284 6.284 19 C 0.218 3.782 20 F -0.150 7.150 21 F -0.162 7.162 22 C -0.107 4.107 23 N -0.184 5.184 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.677 -0.691 -1.719 6.929 hybrid contribution 0.482 0.226 -0.306 0.614 sum -6.195 -0.465 -2.025 6.534 Atomic orbital electron populations 1.70051 1.07371 1.28661 1.26335 1.26144 0.95041 1.01489 0.93443 0.86262 0.80108 0.79698 0.80194 1.18690 1.20023 1.18661 1.19653 0.95132 0.89130 1.39720 0.88884 1.19210 0.87823 0.93414 0.89657 1.23111 0.99330 0.89150 1.13304 1.67583 1.08276 1.30064 1.06435 1.22560 0.91301 0.96530 1.21870 1.20355 0.87318 0.92634 0.94846 1.57942 1.07239 1.06467 1.46945 1.22285 0.91674 1.00701 0.91474 1.22475 0.96930 0.93277 1.06667 1.25873 0.82339 0.91568 0.79643 1.90452 1.21868 1.80658 1.35382 1.21711 0.95894 0.80443 0.80152 1.93089 1.95060 1.92383 1.34471 1.93054 1.88369 1.41503 1.93311 1.23159 0.89746 0.93080 1.04703 1.69117 1.08189 1.22464 1.18603 0.91008 0.84769 0.85529 0.85259 0.93777 0.87354 0.86029 0.86175 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.33 11.51 55.55 0.64 -15.69 16 2 C 0.07 1.49 5.49 -17.34 -0.10 1.39 16 3 Si 0.91 16.54 29.56 -169.99 -5.03 11.52 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.40 -9.63 9.15 -37.75 -0.35 -9.97 16 8 H 0.09 2.03 7.86 -52.49 -0.41 1.62 16 9 C 0.23 5.65 6.54 -84.83 -0.55 5.09 16 10 C -0.08 -1.84 10.97 -16.59 -0.18 -2.02 16 11 N -0.41 -9.71 10.47 -12.11 -0.13 -9.84 16 12 C -0.16 -3.55 10.02 -16.78 -0.17 -3.72 16 13 C 0.29 6.37 6.46 -155.01 -1.00 5.37 16 14 N -0.47 -8.45 4.64 -172.79 -0.80 -9.25 16 15 C 0.07 1.03 5.41 -3.71 -0.02 1.01 16 16 C -0.16 -1.99 6.35 -27.37 -0.17 -2.16 16 17 C 0.34 4.83 6.48 -28.31 -0.18 4.65 16 18 O -0.41 -6.72 17.52 6.00 0.11 -6.61 16 19 C 0.26 3.82 2.29 -27.37 -0.06 3.76 16 20 F -0.17 -2.69 17.07 2.25 0.04 -2.65 16 21 F -0.18 -2.78 16.79 2.25 0.04 -2.74 16 22 C 0.02 0.34 3.69 -3.71 -0.01 0.33 16 23 N -0.46 -11.38 7.27 -10.14 -0.07 -11.46 16 24 H 0.28 5.84 8.29 -40.82 -0.34 5.50 16 25 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 26 H 0.13 2.40 5.77 -52.49 -0.30 2.09 16 27 H 0.13 2.35 7.47 -51.93 -0.39 1.97 16 28 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.12 1.81 6.67 -51.93 -0.35 1.47 16 32 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 LS Contribution 285.39 15.07 4.30 4.30 Total: -1.00 -27.63 285.39 -6.39 -34.02 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.68 Total: 4.69 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.80 Total: 3.72 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.36 Total: -46.24 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.61 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.08 Total: -5.39 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.52 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.63 -6.39 -34.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166975446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.856 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds