Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86799 * 119.99715 * 2 1 4 4 H 1.48498 * 109.47113 * 239.99898 * 3 2 1 5 5 H 1.48497 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47083 * 120.00188 * 3 2 1 7 7 C 1.40048 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00646 * 186.35122 * 7 2 1 9 9 C 1.41277 * 120.00183 * 6.34837 * 7 2 1 10 10 C 1.40715 * 120.16185 * 173.87104 * 9 7 2 11 11 N 1.31902 * 119.93050 * 179.97438 * 10 9 7 12 12 C 1.32167 * 120.27251 * 359.72567 * 11 10 9 13 13 C 1.39914 * 120.31809 * 0.52676 * 12 11 10 14 14 N 1.38830 * 119.97031 * 179.74907 * 13 12 11 15 15 C 1.46822 * 111.00218 * 235.04186 * 14 13 12 16 16 C 1.53298 * 109.39905 * 189.75082 * 15 14 13 17 17 C 1.51435 * 108.24568 * 306.20794 * 16 15 14 18 18 O 1.20760 * 121.11374 * 229.30394 * 17 16 15 19 19 C 1.51436 * 117.77545 * 49.02528 * 17 16 15 20 20 F 1.39897 * 109.70961 * 70.66310 * 19 17 16 21 21 F 1.39901 * 109.70765 * 191.24896 * 19 17 16 22 22 C 1.46834 * 110.99678 * 359.72940 * 14 13 12 23 23 N 1.32266 * 120.06347 * 359.47913 * 13 12 11 24 24 H 0.97000 * 120.00205 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.03273 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.84142 * 180.26085 * 12 11 10 27 27 H 1.08994 * 109.48865 * 309.73176 * 15 14 13 28 28 H 1.09002 * 109.48424 * 69.75982 * 15 14 13 29 29 H 1.08998 * 109.70776 * 186.51996 * 16 15 14 30 30 H 1.08998 * 109.71179 * 65.89723 * 16 15 14 31 31 H 1.08997 * 109.48268 * 50.26514 * 22 14 13 32 32 H 1.09001 * 109.47896 * 290.22025 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6965 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0826 -1.2158 0.1029 9 6 1.3078 -2.4326 -0.1364 10 6 2.0145 -3.6424 -0.2668 11 7 1.3565 -4.7786 -0.3929 12 6 0.0349 -4.7868 -0.3918 13 6 -0.6788 -3.5898 -0.2680 14 7 -2.0670 -3.6063 -0.2730 15 6 -2.6001 -2.7145 -1.3103 16 6 -4.1155 -2.5707 -1.1285 17 6 -4.7230 -3.9575 -1.0972 18 8 -5.6770 -4.2364 -1.7830 19 6 -4.0901 -4.9847 -0.1821 20 9 -4.3568 -4.6565 1.1514 21 9 -4.6063 -6.2531 -0.4682 22 6 -2.5763 -4.9751 -0.4241 23 7 -0.0322 -2.4430 -0.1410 24 1 -0.4850 0.8400 0.0004 25 1 3.0944 -3.6405 -0.2638 26 1 -0.4968 -5.7216 -0.4912 27 1 -2.1292 -1.7352 -1.2251 28 1 -2.3900 -3.1345 -2.2940 29 1 -4.5335 -2.0049 -1.9611 30 1 -4.3261 -2.0559 -0.1911 31 1 -2.0881 -5.6267 0.3006 32 1 -2.3671 -5.3315 -1.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166975446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = -84.946026 kcal Electronic energy + Delta-G solvation = -22442.896650 eV Core-core repulsion = 18653.366288 eV Total energy + Delta-G solvation = -3789.530361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.30470 -48.34829 -41.57905 -40.68024 -38.70390 -35.90168 -34.00134 -33.17932 -31.72344 -30.24997 -27.87334 -25.57561 -25.20237 -23.62607 -22.89563 -21.04939 -19.60967 -19.00791 -18.46410 -18.31165 -17.49037 -17.37623 -16.92541 -16.58335 -16.35997 -16.28499 -15.35669 -15.20071 -15.06763 -14.91944 -14.68546 -14.64634 -14.40826 -13.73813 -13.40161 -13.21441 -13.12632 -13.01271 -12.93502 -12.56153 -12.37143 -12.02857 -11.72311 -11.45562 -11.31062 -10.91509 -10.34112 -9.46327 -8.98115 -8.35043 -6.65372 0.15979 0.59347 1.10077 1.46731 1.56965 1.58949 1.81708 2.08340 2.22428 2.63603 2.81945 3.08425 3.25390 3.49273 3.74168 3.75105 3.96533 4.08718 4.09601 4.22434 4.28954 4.45247 4.54322 4.69550 4.84268 4.95304 5.10042 5.16079 5.51821 5.66718 5.72967 5.94189 6.16019 6.54872 6.75290 7.34359 7.89939 8.31571 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.005411 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.033633 B = 5173.002752 C = 6011.436897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.428 4.428 8 H 0.103 0.897 9 C 0.197 3.803 10 C -0.102 4.102 11 N -0.424 5.424 12 C -0.171 4.171 13 C 0.289 3.711 14 N -0.474 5.474 15 C 0.068 3.932 16 C -0.141 4.141 17 C 0.345 3.655 18 O -0.430 6.430 19 C 0.259 3.741 20 F -0.175 7.175 21 F -0.183 7.183 22 C 0.023 3.977 23 N -0.487 5.487 24 H 0.287 0.713 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -0.087 -2.163 6.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.460 4.460 8 H 0.121 0.879 9 C 0.071 3.929 10 C -0.272 4.272 11 N -0.135 5.135 12 C -0.332 4.332 13 C 0.047 3.953 14 N -0.192 5.192 15 C -0.058 4.058 16 C -0.179 4.179 17 C 0.216 3.784 18 O -0.300 6.300 19 C 0.220 3.780 20 F -0.156 7.156 21 F -0.163 7.163 22 C -0.106 4.106 23 N -0.209 5.209 24 H 0.098 0.902 25 H 0.164 0.836 26 H 0.172 0.828 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.296 0.027 -2.078 7.586 hybrid contribution 0.584 -0.077 -0.176 0.615 sum -6.711 -0.050 -2.254 7.080 Atomic orbital electron populations 1.70113 1.08743 1.30047 1.26141 1.26982 0.95826 1.04413 0.92604 0.85130 0.78664 0.75161 0.80106 1.18340 1.19227 1.18406 1.20056 0.95899 0.89789 1.40233 0.87923 1.19611 0.88513 0.94356 0.90449 1.23279 1.00031 0.89136 1.14739 1.67591 1.09205 1.30075 1.06667 1.23048 0.91058 0.97799 1.21246 1.20660 0.88957 0.92084 0.93606 1.57906 1.05211 1.08337 1.47786 1.22232 0.93316 0.99039 0.91190 1.22443 0.94417 0.92629 1.08378 1.25936 0.81878 0.91720 0.78832 1.90461 1.22678 1.80846 1.35992 1.21732 0.95582 0.80617 0.80026 1.93081 1.95082 1.92430 1.35019 1.93055 1.88308 1.41689 1.93287 1.23212 0.89967 0.91615 1.05804 1.69108 1.08276 1.23796 1.19714 0.90228 0.83598 0.82766 0.87659 0.92966 0.84534 0.85159 0.85988 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -33.88 11.51 21.84 0.25 -33.63 16 2 C 0.03 1.19 5.49 85.30 0.47 1.66 16 3 Si 0.99 33.25 29.56 68.60 2.03 35.28 16 4 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 5 H -0.27 -8.59 7.11 99.48 0.71 -7.88 16 6 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 7 C -0.43 -20.61 9.15 23.46 0.21 -20.39 16 8 H 0.10 4.52 7.86 -2.91 -0.02 4.50 16 9 C 0.20 10.05 6.54 40.16 0.26 10.31 16 10 C -0.10 -4.92 10.97 85.29 0.94 -3.98 16 11 N -0.42 -20.01 10.47 -192.24 -2.01 -22.02 16 12 C -0.17 -7.38 10.02 85.05 0.85 -6.53 16 13 C 0.29 12.66 6.46 133.35 0.86 13.52 16 14 N -0.47 -16.66 4.64 -700.57 -3.25 -19.91 16 15 C 0.07 2.07 5.41 86.42 0.47 2.54 16 16 C -0.14 -3.27 6.35 30.18 0.19 -3.08 16 17 C 0.35 9.15 6.48 29.57 0.19 9.35 16 18 O -0.43 -12.95 17.52 -1.45 -0.03 -12.97 16 19 C 0.26 7.24 2.29 30.18 0.07 7.30 16 20 F -0.18 -5.30 17.07 44.97 0.77 -4.53 16 21 F -0.18 -5.25 16.79 44.97 0.76 -4.50 16 22 C 0.02 0.65 3.69 86.42 0.32 0.97 16 23 N -0.49 -24.25 7.27 -186.00 -1.35 -25.60 16 24 H 0.29 11.90 8.29 -92.71 -0.77 11.13 16 25 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 26 H 0.16 5.60 5.77 -2.91 -0.02 5.58 16 27 H 0.11 3.81 7.47 -2.39 -0.02 3.79 16 28 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 29 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.12 3.48 6.67 -2.39 -0.02 3.46 16 32 H 0.10 2.48 7.90 -2.39 -0.02 2.46 16 Total: -1.00 -58.86 285.39 3.17 -55.69 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.18 Total: 20.52 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 4.83 Total: 11.67 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -6.36 Total: -101.16 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.03 Total: -12.97 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 1.52 Total: -9.03 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Total: -58.86 3.17 -55.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166975446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.260 kcal (2) G-P(sol) polarization free energy of solvation -58.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds