Wall clock time and date at job start Tue Mar 31 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86796 * 120.00510 * 2 1 4 4 H 1.48500 * 109.46886 * 83.21771 * 3 2 1 5 5 H 1.48501 * 109.47399 * 203.21899 * 3 2 1 6 6 H 1.48504 * 109.47021 * 323.22074 * 3 2 1 7 7 C 1.39924 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00123 * 38.24388 * 7 2 1 9 9 C 1.41321 * 120.00360 * 218.24738 * 7 2 1 10 10 C 1.40811 * 120.22346 * 358.93315 * 9 7 2 11 11 C 1.37544 * 119.90406 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.38723 * 359.97438 * 11 10 9 13 13 C 1.39042 * 120.46662 * 0.02562 * 12 11 10 14 14 N 1.40052 * 119.95768 * 179.97438 * 13 12 11 15 15 C 1.37702 * 119.99825 * 30.74444 * 14 13 12 16 16 N 1.30437 * 119.99829 * 6.50217 * 15 14 13 17 17 S 1.76201 * 119.99858 * 186.50330 * 15 14 13 18 18 C 1.81004 * 99.99785 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46771 * 179.97438 * 18 17 15 20 20 N 1.46906 * 109.47015 * 180.02562 * 19 18 17 21 21 C 1.38612 * 120.08174 * 359.74119 * 13 12 11 22 22 F 1.35106 * 120.19011 * 180.27348 * 21 13 12 23 23 H 0.96994 * 120.00466 * 174.98041 * 1 2 3 24 24 H 1.08004 * 120.05125 * 359.95642 * 10 9 7 25 25 H 1.08004 * 119.80820 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.77083 * 179.97438 * 12 11 10 27 27 H 0.96997 * 120.00367 * 210.73388 * 14 13 12 28 28 H 0.96999 * 119.99687 * 179.97438 * 16 15 14 29 29 H 1.08999 * 109.47333 * 300.00153 * 18 17 15 30 30 H 1.09007 * 109.46814 * 60.00080 * 18 17 15 31 31 H 1.09004 * 109.47363 * 299.99760 * 19 18 17 32 32 H 1.08997 * 109.47426 * 60.00517 * 19 18 17 33 33 H 1.00900 * 111.00264 * 180.02562 * 20 19 18 34 34 H 1.00902 * 110.99927 * 303.96082 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3470 2.1289 1.3903 5 1 3.6045 1.4029 -0.5520 6 1 1.5191 2.6071 -0.8383 7 6 2.0081 -1.2118 -0.0005 8 1 1.6419 -2.0465 -0.5799 9 6 3.1938 -1.3437 0.7570 10 6 3.6877 -0.2517 1.4963 11 6 4.8420 -0.3875 2.2318 12 6 5.5237 -1.5947 2.2506 13 6 5.0502 -2.6832 1.5265 14 7 5.7475 -3.8975 1.5528 15 6 6.4593 -4.2585 2.6749 16 7 6.3824 -3.5342 3.7570 17 16 7.4739 -5.6988 2.6490 18 6 8.1269 -5.6537 4.3365 19 6 9.0620 -6.8450 4.5535 20 7 9.5915 -6.8087 5.9233 21 6 3.8862 -2.5693 0.7826 22 9 3.4211 -3.6272 0.0825 23 1 -0.4850 -0.8367 -0.0735 24 1 3.1610 0.6912 1.4856 25 1 5.2192 0.4509 2.7985 26 1 6.4294 -1.6902 2.8312 27 1 5.7290 -4.4842 0.7806 28 1 6.8835 -3.7887 4.5475 29 1 8.6785 -4.7259 4.4880 30 1 7.3017 -5.7058 5.0469 31 1 8.5100 -7.7726 4.4022 32 1 9.8872 -6.7933 3.8432 33 1 10.2128 -7.5857 6.0916 34 1 10.0523 -5.9307 6.1098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167914721.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:18 Heat of formation + Delta-G solvation = 4.485274 kcal Electronic energy + Delta-G solvation = -19161.673032 eV Core-core repulsion = 15942.233879 eV Total energy + Delta-G solvation = -3219.439153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.085 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.34463 -38.45160 -36.39100 -35.89022 -33.85509 -32.57700 -29.99700 -29.47168 -28.28471 -24.90603 -23.11080 -22.81052 -20.93148 -20.48929 -18.48340 -18.15690 -16.80425 -16.35686 -16.19199 -15.65636 -15.46734 -15.00076 -14.63626 -14.40558 -14.12923 -13.67125 -13.41220 -13.21880 -12.90810 -12.57693 -12.28060 -12.09425 -11.78094 -11.34325 -11.22947 -10.93283 -10.85095 -10.36480 -10.09294 -9.44228 -9.26508 -9.22818 -8.95422 -8.60712 -8.09849 -7.73288 -7.59020 -6.95951 -4.57259 0.96091 1.93437 2.11646 2.65902 2.86420 3.12324 3.31177 3.47565 3.70437 3.88565 4.13178 4.32758 4.34011 4.47617 4.94761 5.23709 5.27177 5.36955 5.48384 5.74427 6.06521 6.29354 6.52223 6.65861 6.73446 6.87437 6.92843 7.21179 7.34968 7.45561 7.53173 7.71162 7.81661 7.95942 8.31732 8.35769 8.47719 8.65007 9.70561 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039812 B = 0.003696 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.134426 B = 7574.078412 C = 8026.772087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.051 3.949 3 Si 1.079 2.921 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.256 4.256 11 C -0.059 4.059 12 C -0.230 4.230 13 C 0.177 3.823 14 N -0.634 5.634 15 C 0.432 3.568 16 N -0.730 5.730 17 S -0.176 6.176 18 C -0.101 4.101 19 C 0.081 3.919 20 N -0.847 5.847 21 C -0.071 4.071 22 F -0.163 7.163 23 H 0.293 0.707 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.414 0.586 28 H 0.338 0.662 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.349 0.651 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.262 -8.203 5.924 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.175 4.175 3 Si 0.906 3.094 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.220 1.220 7 C -0.530 4.530 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.275 4.275 11 C -0.078 4.078 12 C -0.252 4.252 13 C 0.081 3.919 14 N -0.266 5.266 15 C 0.041 3.959 16 N -0.370 5.370 17 S 0.048 5.952 18 C -0.251 4.251 19 C -0.051 4.051 20 N -0.378 5.378 21 C -0.094 4.094 22 F -0.142 7.142 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.250 0.750 28 H 0.158 0.842 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.162 0.838 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.853 -6.629 5.622 16.354 hybrid contribution 1.125 -2.015 0.252 2.321 sum 14.978 -8.644 5.874 18.264 Atomic orbital electron populations 1.70601 1.08531 1.33994 1.26155 1.27475 0.95283 1.05189 0.89552 0.83567 0.76116 0.72414 0.77264 1.20022 1.18513 1.21980 1.20559 1.06531 1.00235 1.25636 0.89894 1.17325 0.91559 0.89606 0.92747 1.20709 1.00972 0.98107 1.07753 1.20431 0.94599 0.95928 0.96887 1.20123 1.04201 0.91649 1.09191 1.17359 0.90552 0.84482 0.99527 1.41679 1.50119 1.21041 1.13759 1.23735 0.91277 0.90522 0.90415 1.69435 1.32860 1.33177 1.01543 1.86039 1.55812 1.35008 1.18304 1.23598 1.03363 1.02988 0.95136 1.21368 0.96712 0.97316 0.89676 1.58656 1.45603 1.08618 1.24965 1.17164 0.97228 0.86478 1.08530 1.91238 1.88956 1.55568 1.78471 0.89512 0.88228 0.88200 0.86095 0.74983 0.84220 0.89176 0.88092 0.89637 0.94094 0.83778 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.18 13.66 55.55 0.76 -19.42 16 2 C 0.05 1.31 5.32 -17.34 -0.09 1.22 16 3 Si 1.08 23.62 25.02 -169.99 -4.25 19.37 16 4 H -0.27 -5.70 6.60 56.52 0.37 -5.33 16 5 H -0.26 -5.60 7.02 56.52 0.40 -5.20 16 6 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.50 -13.77 9.15 -37.78 -0.35 -14.11 16 8 H 0.08 2.37 7.65 -52.48 -0.40 1.96 16 9 C 0.09 2.45 5.61 -106.79 -0.60 1.85 16 10 C -0.26 -6.32 8.01 -38.86 -0.31 -6.63 16 11 C -0.06 -1.33 10.01 -39.68 -0.40 -1.73 16 12 C -0.23 -5.11 8.60 -39.13 -0.34 -5.45 16 13 C 0.18 4.02 6.33 -83.66 -0.53 3.49 16 14 N -0.63 -11.94 5.37 -10.43 -0.06 -12.00 16 15 C 0.43 7.18 7.89 -87.94 -0.69 6.49 16 16 N -0.73 -12.61 10.63 30.77 0.33 -12.28 16 17 S -0.18 -2.16 22.23 -107.50 -2.39 -4.55 16 18 C -0.10 -0.96 4.57 37.16 0.17 -0.79 16 19 C 0.08 0.61 6.79 -3.82 -0.03 0.58 16 20 N -0.85 -5.40 9.62 -10.37 -0.10 -5.50 16 21 C -0.07 -1.79 7.31 -38.48 -0.28 -2.08 16 22 F -0.16 -4.07 16.19 2.25 0.04 -4.04 16 23 H 0.29 7.45 8.73 -40.82 -0.36 7.09 16 24 H 0.10 2.38 2.54 -52.48 -0.13 2.24 16 25 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 26 H 0.12 2.54 6.09 -52.49 -0.32 2.22 16 27 H 0.41 7.04 8.63 -40.82 -0.35 6.68 16 28 H 0.34 4.84 6.02 -40.82 -0.25 4.59 16 29 H 0.09 0.80 7.68 -51.92 -0.40 0.40 16 30 H 0.10 1.03 7.67 -51.91 -0.40 0.63 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.35 1.59 9.08 -39.29 -0.36 1.23 16 34 H 0.34 1.82 8.99 -39.29 -0.35 1.46 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -29.14 300.46 -8.00 -37.15 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -3.41 Total: 13.91 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.44 Total: -17.16 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.93 Total: -49.21 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.25 Total: 19.37 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.39 Total: -4.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.14 -8.00 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167914721.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.632 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds