Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47281 * 95.55102 * 3 2 1 5 5 H 1.48496 * 109.46959 * 215.55314 * 3 2 1 6 6 H 1.48498 * 109.47046 * 335.54977 * 3 2 1 7 7 C 1.39923 * 119.99962 * 179.72377 * 2 1 3 8 8 H 1.07998 * 119.99904 * 323.00060 * 7 2 1 9 9 C 1.41001 * 119.99936 * 143.00375 * 7 2 1 10 10 C 1.41002 * 120.31653 * 325.71411 * 9 7 2 11 11 F 1.35104 * 120.12271 * 0.02562 * 10 9 7 12 12 C 1.37741 * 119.76077 * 180.02562 * 10 9 7 13 13 C 1.38780 * 120.41813 * 359.97438 * 12 10 9 14 14 C 1.38242 * 120.65696 * 0.02562 * 13 12 10 15 15 C 1.38589 * 120.22530 * 359.71601 * 14 13 12 16 16 N 1.39042 * 120.21308 * 180.30352 * 15 14 13 17 17 C 1.37763 * 120.00133 * 331.93709 * 16 15 14 18 18 N 1.30412 * 119.99938 * 354.93317 * 17 16 15 19 19 S 1.76204 * 119.99846 * 174.93692 * 17 16 15 20 20 C 1.81004 * 99.99714 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.46627 * 179.97438 * 20 19 17 22 22 N 1.46906 * 109.46890 * 180.02562 * 21 20 19 23 23 H 0.96995 * 120.00118 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.79056 * 179.97438 * 12 10 9 25 25 H 1.08003 * 119.67242 * 180.02562 * 13 12 10 26 26 H 1.08004 * 119.88740 * 180.02562 * 14 13 12 27 27 H 0.96999 * 119.99596 * 151.94166 * 16 15 14 28 28 H 0.97000 * 119.99827 * 180.02562 * 18 17 16 29 29 H 1.08994 * 109.47351 * 299.99554 * 20 19 17 30 30 H 1.08993 * 109.46860 * 60.00243 * 20 19 17 31 31 H 1.09002 * 109.47684 * 300.00153 * 21 20 19 32 32 H 1.09006 * 109.47262 * 60.00731 * 21 20 19 33 33 H 1.00900 * 111.00131 * 56.04737 * 22 21 20 34 34 H 1.00901 * 110.99893 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.6077 1.9787 1.3934 5 1 3.4768 1.4769 -0.8141 6 1 1.3866 2.6836 -0.5795 7 6 2.0086 -1.2118 0.0058 8 1 1.6317 -2.0502 0.5728 9 6 3.2057 -1.3382 -0.7284 10 6 3.3650 -0.6574 -1.9528 11 9 2.3696 0.1218 -2.4298 12 6 4.5390 -0.7895 -2.6609 13 6 5.5657 -1.5878 -2.1765 14 6 5.4281 -2.2630 -0.9781 15 6 4.2604 -2.1451 -0.2410 16 7 4.1247 -2.8193 0.9674 17 6 4.8085 -3.9962 1.1802 18 7 5.5045 -4.5296 0.2149 19 16 4.7427 -4.7807 2.7566 20 6 5.7905 -6.2211 2.4346 21 6 5.8842 -7.0764 3.6998 22 7 6.7351 -8.2452 3.4388 23 1 -0.4850 0.8400 -0.0004 24 1 4.6613 -0.2686 -3.5990 25 1 6.4813 -1.6824 -2.7414 26 1 6.2352 -2.8806 -0.6125 27 1 3.5485 -2.4611 1.6606 28 1 5.9857 -5.3584 0.3646 29 1 5.3578 -6.8121 1.6275 30 1 6.7876 -5.8880 2.1470 31 1 6.3171 -6.4853 4.5068 32 1 4.8871 -7.4096 3.9879 33 1 7.6456 -7.9629 3.1080 34 1 6.8125 -8.8266 4.2597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167916805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = 11.365275 kcal Electronic energy + Delta-G solvation = -19475.910378 eV Core-core repulsion = 16256.769564 eV Total energy + Delta-G solvation = -3219.140814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.085 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.45290 -38.54623 -35.92619 -35.66325 -33.73064 -32.42317 -30.21752 -29.23984 -28.26850 -25.22742 -22.87848 -22.54810 -21.10835 -20.00844 -18.14328 -17.72985 -16.92895 -16.22519 -15.86248 -15.53816 -15.24397 -14.87437 -14.49387 -14.26633 -14.05884 -13.97133 -13.33759 -13.22161 -12.87758 -12.39649 -12.13016 -11.91709 -11.61462 -11.48826 -11.20816 -11.01731 -10.75674 -10.48833 -10.17677 -9.76145 -9.17295 -9.15027 -8.85602 -8.55637 -7.92255 -7.49173 -7.11362 -6.88044 -4.44929 1.16323 2.12377 2.23514 2.58539 2.97445 3.14163 3.21064 3.27875 4.00447 4.05289 4.23989 4.38415 4.44953 4.59591 5.06895 5.21589 5.36133 5.49035 5.67612 5.89244 6.06313 6.29196 6.51361 6.61071 6.78757 6.96059 6.98512 7.17903 7.24110 7.47913 7.63052 7.87007 8.02074 8.05390 8.24280 8.59482 8.63560 8.74949 9.89404 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.004636 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.496193 B = 6038.691206 C = 6801.497386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.107 3.893 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.242 1.242 6 H -0.278 1.278 7 C -0.476 4.476 8 H 0.094 0.906 9 C 0.055 3.945 10 C -0.008 4.008 11 F -0.152 7.152 12 C -0.127 4.127 13 C -0.208 4.208 14 C -0.082 4.082 15 C 0.063 3.937 16 N -0.604 5.604 17 C 0.429 3.571 18 N -0.753 5.753 19 S -0.178 6.178 20 C -0.100 4.100 21 C 0.081 3.919 22 N -0.847 5.847 23 H 0.287 0.713 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.129 0.871 27 H 0.417 0.583 28 H 0.334 0.666 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.343 0.657 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 -7.903 7.243 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.118 4.118 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.166 1.166 6 H -0.203 1.203 7 C -0.502 4.502 8 H 0.112 0.888 9 C 0.050 3.950 10 C -0.029 4.029 11 F -0.131 7.131 12 C -0.146 4.146 13 C -0.228 4.228 14 C -0.104 4.104 15 C -0.034 4.034 16 N -0.234 5.234 17 C 0.038 3.962 18 N -0.395 5.395 19 S 0.047 5.953 20 C -0.250 4.250 21 C -0.051 4.051 22 N -0.379 5.379 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.255 0.745 28 H 0.154 0.846 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.716 -7.434 6.670 13.256 hybrid contribution 0.980 0.462 0.485 1.187 sum 9.696 -6.973 7.155 13.922 Atomic orbital electron populations 1.69898 1.08733 1.30826 1.29715 1.26131 0.94224 1.01989 0.89470 0.86423 0.82637 0.79729 0.78696 1.20481 1.16552 1.20329 1.18974 1.03393 0.99279 1.28579 0.88846 1.17297 0.91916 0.94501 0.91304 1.17329 0.87106 1.03009 0.95412 1.91163 1.61024 1.72983 1.87937 1.20585 0.93448 1.01128 0.99488 1.20073 0.98934 1.04749 0.99033 1.20838 0.96175 0.98578 0.94782 1.17327 0.93745 1.04078 0.88261 1.41314 1.46253 1.19113 1.16769 1.23825 0.92901 0.89736 0.89714 1.69384 1.22108 1.19779 1.28272 1.86072 1.64264 1.26589 1.18395 1.23558 1.01835 0.96499 1.03125 1.21375 0.99269 0.90579 0.93868 1.58646 1.18951 1.20652 1.39612 0.90241 0.87944 0.88010 0.85381 0.74499 0.84642 0.88201 0.89350 0.94160 0.89650 0.84480 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.19 13.93 55.55 0.77 -19.41 16 2 C 0.11 2.76 4.45 -17.32 -0.08 2.68 16 3 Si 0.90 20.77 25.93 -169.99 -4.41 16.36 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.24 -5.80 5.81 56.52 0.33 -5.47 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.48 -12.47 8.46 -37.90 -0.32 -12.79 16 8 H 0.09 2.51 7.72 -52.49 -0.41 2.11 16 9 C 0.06 1.40 4.88 -106.58 -0.52 0.88 16 10 C -0.01 -0.20 5.36 -38.72 -0.21 -0.40 16 11 F -0.15 -3.94 13.34 2.25 0.03 -3.91 16 12 C -0.13 -2.85 9.99 -39.56 -0.40 -3.25 16 13 C -0.21 -4.42 10.03 -39.38 -0.40 -4.82 16 14 C -0.08 -1.79 8.60 -39.45 -0.34 -2.13 16 15 C 0.06 1.45 6.41 -83.24 -0.53 0.91 16 16 N -0.60 -12.13 5.17 -10.08 -0.05 -12.18 16 17 C 0.43 7.54 7.93 -87.91 -0.70 6.84 16 18 N -0.75 -13.34 10.39 30.78 0.32 -13.02 16 19 S -0.18 -2.40 22.23 -107.50 -2.39 -4.79 16 20 C -0.10 -1.04 4.57 37.16 0.17 -0.87 16 21 C 0.08 0.68 6.79 -3.82 -0.03 0.65 16 22 N -0.85 -5.99 9.62 -10.36 -0.10 -6.09 16 23 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 24 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 25 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 26 H 0.13 2.65 5.82 -52.48 -0.31 2.35 16 27 H 0.42 8.02 7.89 -40.82 -0.32 7.70 16 28 H 0.33 4.98 6.02 -40.82 -0.25 4.74 16 29 H 0.10 1.12 7.67 -51.92 -0.40 0.72 16 30 H 0.09 0.86 7.67 -51.92 -0.40 0.46 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.34 2.02 8.99 -39.29 -0.35 1.67 16 34 H 0.35 1.81 9.08 -39.29 -0.36 1.46 16 LS Contribution 299.69 15.07 4.52 4.52 Total: -1.00 -28.54 299.69 -8.34 -36.88 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -3.68 Total: 13.94 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.34 Total: -12.30 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.94 Total: -50.70 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.91 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.41 Total: 16.36 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.39 Total: -4.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.54 -8.34 -36.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167916805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.245 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds