Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99416 * 196.61053 * 3 2 1 5 5 N 3.51036 * 140.69113 * 196.61168 * 2 1 3 6 6 C 1.41117 * 120.00097 * 16.61054 * 3 2 1 7 7 C 1.38930 * 120.00179 * 354.30093 * 6 3 2 8 8 H 1.07996 * 119.99986 * 332.02178 * 7 6 3 9 9 C 1.40863 * 120.00019 * 152.02358 * 7 6 3 10 10 N 1.30327 * 120.00262 * 168.80571 * 9 7 6 11 11 Si 1.86798 * 120.00198 * 348.80611 * 9 7 6 12 12 H 1.48503 * 109.47025 * 88.66470 * 11 9 7 13 13 H 1.48495 * 109.47587 * 208.66586 * 11 9 7 14 14 H 1.48502 * 109.47082 * 328.66782 * 11 9 7 15 15 N 1.38478 * 119.99663 * 174.30223 * 6 3 2 16 16 C 1.38639 * 119.99873 * 120.29367 * 15 6 3 17 17 N 1.32487 * 119.13141 * 355.10583 * 16 15 6 18 18 C 1.32463 * 120.78768 * 179.97438 * 17 16 15 19 19 C 1.38080 * 118.86478 * 0.02562 * 18 17 16 20 20 C 1.38848 * 118.89010 * 359.97438 * 19 18 17 21 21 N 1.31855 * 119.25764 * 0.02562 * 20 19 18 22 22 C 1.50930 * 107.18463 * 180.02562 * 20 19 18 23 23 O 1.43986 * 106.00267 * 17.58380 * 22 20 19 24 24 C 1.44004 * 105.01235 * 331.72880 * 23 22 20 25 25 H 0.96997 * 120.00285 * 179.97438 * 10 9 7 26 26 H 0.97004 * 120.00205 * 300.28716 * 15 6 3 27 27 H 1.08004 * 120.56814 * 179.72540 * 18 17 16 28 28 H 1.09003 * 110.14749 * 136.71542 * 22 20 19 29 29 H 1.08995 * 110.14844 * 258.37567 * 22 20 19 30 30 H 1.09001 * 110.15777 * 147.35763 * 24 23 22 31 31 H 1.09000 * 110.15261 * 269.05255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.1894 0.3545 5 7 3.8521 2.1310 0.6358 6 6 3.2742 -1.1701 -0.3494 7 6 2.5852 -2.3547 -0.5780 8 1 1.6415 -2.5344 -0.0846 9 6 3.1177 -3.3215 -1.4533 10 7 2.5939 -4.5138 -1.5038 11 14 4.5745 -2.8946 -2.5418 12 1 5.8369 -3.1786 -1.8131 13 1 4.5234 -3.7120 -3.7804 14 1 4.5215 -1.4537 -2.8971 15 7 4.6538 -1.1382 -0.4643 16 6 5.4352 -1.9561 0.3374 17 7 4.8516 -2.6889 1.2742 18 6 5.5665 -3.4820 2.0581 19 6 6.9353 -3.5335 1.8840 20 6 7.5153 -2.7527 0.8930 21 7 6.7473 -1.9841 0.1461 22 6 9.0018 -3.0113 0.9346 23 8 9.1709 -4.2384 1.6687 24 6 8.0447 -4.2954 2.5643 25 1 2.9603 -5.1794 -2.1068 26 1 5.0735 -0.5437 -1.1057 27 1 5.0875 -4.0745 2.8235 28 1 9.3919 -3.1223 -0.0771 29 1 9.5109 -2.1939 1.4451 30 1 7.7451 -5.3310 2.7255 31 1 8.2967 -3.8254 3.5149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = 92.569532 kcal Electronic energy + Delta-G solvation = -21113.193265 eV Core-core repulsion = 17782.049742 eV Total energy + Delta-G solvation = -3331.143523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51478 -39.07473 -37.33255 -35.33248 -34.79608 -34.09134 -33.62078 -31.90446 -30.02545 -28.56958 -27.33794 -25.56546 -23.18379 -22.34377 -21.16616 -19.26426 -18.46655 -17.72251 -17.03817 -16.63193 -16.32831 -16.15055 -15.40161 -14.97625 -14.64190 -13.76501 -13.47695 -13.38054 -13.06992 -12.89757 -12.81422 -12.63156 -12.53720 -11.95108 -11.80217 -11.65352 -11.59774 -11.29952 -11.04804 -10.88801 -10.71185 -10.58748 -10.39527 -10.00041 -9.65209 -8.95599 -8.53670 -7.86801 -7.57116 -5.45823 1.07833 1.25991 1.94724 2.64488 2.74059 2.74800 2.95868 3.34349 3.70504 3.78704 3.86245 3.91744 3.99680 4.17809 4.24164 4.38388 4.67465 4.75209 5.08739 5.14073 5.21156 5.29846 5.43221 5.44593 5.51127 5.76809 6.05632 6.16132 6.32791 6.41160 6.81403 7.07079 7.21404 7.40697 7.47669 7.79646 7.96336 8.51519 8.85728 9.08609 9.11426 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.006702 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.330438 B = 4176.841041 C = 4835.372776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.325 3.675 3 C -0.293 4.293 4 C 0.307 3.693 5 N -0.530 5.530 6 C 0.341 3.659 7 C -0.323 4.323 8 H 0.126 0.874 9 C 0.074 3.926 10 N -0.723 5.723 11 Si 0.916 3.084 12 H -0.251 1.251 13 H -0.281 1.281 14 H -0.247 1.247 15 N -0.644 5.644 16 C 0.582 3.418 17 N -0.514 5.514 18 C 0.219 3.781 19 C -0.315 4.315 20 C 0.174 3.826 21 N -0.545 5.545 22 C 0.104 3.896 23 O -0.358 6.358 24 C 0.113 3.887 25 H 0.304 0.696 26 H 0.416 0.584 27 H 0.171 0.829 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.731 -7.039 2.137 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C 0.016 3.984 3 C -0.311 4.311 4 C 0.000 4.000 5 N -0.213 5.213 6 C 0.240 3.760 7 C -0.350 4.350 8 H 0.143 0.857 9 C -0.158 4.158 10 N -0.341 5.341 11 Si 0.740 3.260 12 H -0.176 1.176 13 H -0.208 1.208 14 H -0.171 1.171 15 N -0.279 5.279 16 C 0.227 3.773 17 N -0.233 5.233 18 C 0.051 3.949 19 C -0.323 4.323 20 C 0.023 3.977 21 N -0.267 5.267 22 C 0.027 3.973 23 O -0.275 6.275 24 C 0.035 3.965 25 H 0.116 0.884 26 H 0.256 0.744 27 H 0.188 0.812 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.203 -5.440 1.911 12.600 hybrid contribution 1.180 -0.547 -0.345 1.345 sum 12.383 -5.988 1.567 13.843 Atomic orbital electron populations 1.81066 1.12116 1.09556 1.17828 1.24532 0.91135 0.92038 0.90671 1.12688 0.83161 0.90516 1.44730 1.25184 0.92508 0.91818 0.90522 1.81048 1.09758 1.11757 1.18688 1.16679 0.78096 0.91651 0.89621 1.20000 1.05475 0.95227 1.14274 0.85672 1.26747 0.98227 0.93547 0.97274 1.69386 1.34675 1.02963 1.27031 0.86166 0.79952 0.81041 0.78828 1.17574 1.20781 1.17117 1.41868 1.05178 1.41524 1.39307 1.18928 0.84004 0.87476 0.86850 1.68368 1.38598 1.09680 1.06697 1.22277 0.88086 0.90952 0.93593 1.22271 0.97609 1.07583 1.04868 1.22109 0.97045 0.89229 0.89300 1.66840 1.04370 1.25730 1.29776 1.21601 0.88580 0.88188 0.98970 1.89134 1.44429 1.39943 1.54035 1.21386 0.82371 1.00637 0.92082 0.88444 0.74383 0.81243 0.87218 0.88929 0.88415 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.62 18.54 41.84 0.78 -11.85 16 2 C 0.32 7.49 14.06 -22.47 -0.32 7.17 16 3 C -0.29 -6.38 5.88 -104.95 -0.62 -6.99 16 4 C 0.31 6.85 14.82 -22.49 -0.33 6.51 16 5 N -0.53 -12.28 18.53 41.81 0.77 -11.50 16 6 C 0.34 7.08 4.92 -83.51 -0.41 6.67 16 7 C -0.32 -6.98 8.05 -38.33 -0.31 -7.28 16 8 H 0.13 2.95 7.49 -52.49 -0.39 2.56 16 9 C 0.07 1.52 5.38 -17.20 -0.09 1.43 16 10 N -0.72 -15.16 13.90 55.60 0.77 -14.39 16 11 Si 0.92 16.69 24.33 -169.99 -4.14 12.56 16 12 H -0.25 -4.66 5.72 56.52 0.32 -4.34 16 13 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 14 H -0.25 -4.36 6.52 56.52 0.37 -3.99 16 15 N -0.64 -12.39 2.23 -11.34 -0.03 -12.42 16 16 C 0.58 10.93 5.83 -322.31 -1.88 9.05 16 17 N -0.51 -9.49 8.97 -13.93 -0.12 -9.61 16 18 C 0.22 3.19 11.31 -17.34 -0.20 2.99 16 19 C -0.32 -4.20 6.38 -104.40 -0.67 -4.87 16 20 C 0.17 2.57 7.56 -82.24 -0.62 1.95 16 21 N -0.54 -9.49 9.73 -10.02 -0.10 -9.58 16 22 C 0.10 1.15 7.63 36.12 0.28 1.42 16 23 O -0.36 -4.12 11.72 -35.23 -0.41 -4.53 16 24 C 0.11 1.13 7.63 36.06 0.28 1.41 16 25 H 0.30 5.70 8.28 -40.82 -0.34 5.36 16 26 H 0.42 7.46 7.85 -40.82 -0.32 7.14 16 27 H 0.17 1.85 8.06 -52.48 -0.42 1.42 16 28 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 291.01 15.07 4.39 4.39 Total: -1.00 -27.26 291.01 -5.05 -32.31 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.07 Total: 5.17 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: -4.89 Total: 19.46 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: 2.08 Total: -69.35 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.41 Total: -4.53 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -4.14 Total: 12.56 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.26 -5.05 -32.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.879 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds