Wall clock time and date at job start Tue Mar 31 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99416 * 196.61053 * 3 2 1 5 5 N 3.51036 * 140.69113 * 196.61168 * 2 1 3 6 6 C 1.41117 * 120.00097 * 16.61054 * 3 2 1 7 7 C 1.38930 * 120.00179 * 354.30093 * 6 3 2 8 8 H 1.07996 * 119.99986 * 332.02178 * 7 6 3 9 9 C 1.40863 * 120.00019 * 152.02358 * 7 6 3 10 10 N 1.30327 * 120.00262 * 168.80571 * 9 7 6 11 11 Si 1.86798 * 120.00198 * 348.80611 * 9 7 6 12 12 H 1.48503 * 109.47025 * 88.66470 * 11 9 7 13 13 H 1.48495 * 109.47587 * 208.66586 * 11 9 7 14 14 H 1.48502 * 109.47082 * 328.66782 * 11 9 7 15 15 N 1.38478 * 119.99663 * 174.30223 * 6 3 2 16 16 C 1.38639 * 119.99873 * 120.29367 * 15 6 3 17 17 N 1.32487 * 119.13141 * 355.10583 * 16 15 6 18 18 C 1.32463 * 120.78768 * 179.97438 * 17 16 15 19 19 C 1.38080 * 118.86478 * 0.02562 * 18 17 16 20 20 C 1.38848 * 118.89010 * 359.97438 * 19 18 17 21 21 N 1.31855 * 119.25764 * 0.02562 * 20 19 18 22 22 C 1.50930 * 107.18463 * 180.02562 * 20 19 18 23 23 O 1.43986 * 106.00267 * 17.58380 * 22 20 19 24 24 C 1.44004 * 105.01235 * 331.72880 * 23 22 20 25 25 H 0.96997 * 120.00285 * 179.97438 * 10 9 7 26 26 H 0.97004 * 120.00205 * 300.28716 * 15 6 3 27 27 H 1.08004 * 120.56814 * 179.72540 * 18 17 16 28 28 H 1.09003 * 110.14749 * 136.71542 * 22 20 19 29 29 H 1.08995 * 110.14844 * 258.37567 * 22 20 19 30 30 H 1.09001 * 110.15777 * 147.35763 * 24 23 22 31 31 H 1.09000 * 110.15261 * 269.05255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.1894 0.3545 5 7 3.8521 2.1310 0.6358 6 6 3.2742 -1.1701 -0.3494 7 6 2.5852 -2.3547 -0.5780 8 1 1.6415 -2.5344 -0.0846 9 6 3.1177 -3.3215 -1.4533 10 7 2.5939 -4.5138 -1.5038 11 14 4.5745 -2.8946 -2.5418 12 1 5.8369 -3.1786 -1.8131 13 1 4.5234 -3.7120 -3.7804 14 1 4.5215 -1.4537 -2.8971 15 7 4.6538 -1.1382 -0.4643 16 6 5.4352 -1.9561 0.3374 17 7 4.8516 -2.6889 1.2742 18 6 5.5665 -3.4820 2.0581 19 6 6.9353 -3.5335 1.8840 20 6 7.5153 -2.7527 0.8930 21 7 6.7473 -1.9841 0.1461 22 6 9.0018 -3.0113 0.9346 23 8 9.1709 -4.2384 1.6687 24 6 8.0447 -4.2954 2.5643 25 1 2.9603 -5.1794 -2.1068 26 1 5.0735 -0.5437 -1.1057 27 1 5.0875 -4.0745 2.8235 28 1 9.3919 -3.1223 -0.0771 29 1 9.5109 -2.1939 1.4451 30 1 7.7451 -5.3310 2.7255 31 1 8.2967 -3.8254 3.5149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169078682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:06 Heat of formation + Delta-G solvation = 75.570004 kcal Electronic energy + Delta-G solvation = -21113.930420 eV Core-core repulsion = 17782.049742 eV Total energy + Delta-G solvation = -3331.880678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.65985 -40.22627 -38.73865 -37.05174 -36.62025 -35.64972 -34.84331 -33.23344 -31.38428 -29.55711 -29.02025 -26.65749 -24.49714 -23.34546 -22.68846 -20.87668 -19.75306 -19.30669 -18.35738 -18.05195 -17.42781 -17.23056 -16.77778 -16.07125 -15.87801 -15.00201 -14.74969 -14.68613 -14.56102 -14.43239 -14.30517 -13.96120 -13.56379 -13.52691 -13.46775 -13.39567 -13.19106 -12.88338 -12.84284 -12.31314 -12.09895 -11.89732 -11.65367 -11.29747 -10.82201 -10.20109 -9.98041 -9.44937 -9.01291 -7.20332 -0.13856 0.09976 0.37896 1.16092 1.29140 1.32254 1.58015 1.86845 1.99719 2.16938 2.41997 2.49570 2.72876 2.78037 2.89680 3.29436 3.35349 3.50107 3.69076 3.72454 4.21907 4.36519 4.38118 4.53354 4.60772 4.65064 4.69493 4.80512 5.03138 5.35669 5.43613 5.57485 5.71416 5.89313 5.96022 6.27485 6.38290 7.06952 7.21273 7.28208 7.55102 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.006702 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.330438 B = 4176.841041 C = 4835.372776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.330 3.670 3 C -0.302 4.302 4 C 0.316 3.684 5 N -0.547 5.547 6 C 0.358 3.642 7 C -0.327 4.327 8 H 0.099 0.901 9 C 0.057 3.943 10 N -0.742 5.742 11 Si 0.955 3.045 12 H -0.254 1.254 13 H -0.274 1.274 14 H -0.241 1.241 15 N -0.650 5.650 16 C 0.563 3.437 17 N -0.548 5.548 18 C 0.206 3.794 19 C -0.300 4.300 20 C 0.153 3.847 21 N -0.557 5.557 22 C 0.109 3.891 23 O -0.366 6.366 24 C 0.115 3.885 25 H 0.315 0.685 26 H 0.420 0.580 27 H 0.202 0.798 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.006 -8.157 2.518 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.232 5.232 2 C 0.022 3.978 3 C -0.320 4.320 4 C 0.010 3.990 5 N -0.230 5.230 6 C 0.255 3.745 7 C -0.354 4.354 8 H 0.117 0.883 9 C -0.174 4.174 10 N -0.360 5.360 11 Si 0.777 3.223 12 H -0.179 1.179 13 H -0.201 1.201 14 H -0.164 1.164 15 N -0.286 5.286 16 C 0.208 3.792 17 N -0.268 5.268 18 C 0.040 3.960 19 C -0.308 4.308 20 C 0.003 3.997 21 N -0.280 5.280 22 C 0.032 3.968 23 O -0.284 6.284 24 C 0.038 3.962 25 H 0.128 0.872 26 H 0.261 0.739 27 H 0.218 0.782 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.506 -6.589 2.323 15.206 hybrid contribution 0.545 -0.352 -0.359 0.742 sum 14.052 -6.941 1.964 15.795 Atomic orbital electron populations 1.81048 1.12753 1.10306 1.19052 1.24745 0.91409 0.91429 0.90182 1.12732 0.82609 0.90940 1.45756 1.25158 0.92153 0.91585 0.90112 1.81041 1.10259 1.12132 1.19518 1.16440 0.79007 0.90730 0.88335 1.19890 1.04631 0.96195 1.14711 0.88329 1.27185 0.99465 0.93191 0.97547 1.69370 1.35403 1.03571 1.27652 0.85563 0.77645 0.81342 0.77713 1.17875 1.20069 1.16443 1.41703 1.04371 1.42416 1.40146 1.18951 0.84595 0.88178 0.87466 1.68324 1.40154 1.10802 1.07565 1.22840 0.88942 0.90564 0.93654 1.22706 0.97775 1.06391 1.03909 1.22880 0.98891 0.88786 0.89188 1.66835 1.03925 1.26598 1.30633 1.21782 0.86190 0.88780 1.00088 1.89138 1.44679 1.40155 1.54381 1.21632 0.80630 1.01725 0.92240 0.87223 0.73945 0.78178 0.86046 0.86609 0.86184 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.84 18.54 19.01 0.35 -26.49 16 2 C 0.33 15.42 14.06 88.33 1.24 16.66 16 3 C -0.30 -13.24 5.88 -20.08 -0.12 -13.36 16 4 C 0.32 14.11 14.82 88.34 1.31 15.42 16 5 N -0.55 -25.17 18.53 19.00 0.35 -24.82 16 6 C 0.36 14.90 4.92 38.97 0.19 15.09 16 7 C -0.33 -14.30 8.05 23.08 0.19 -14.11 16 8 H 0.10 4.80 7.49 -2.91 -0.02 4.78 16 9 C 0.06 2.32 5.38 85.56 0.46 2.78 16 10 N -0.74 -30.81 13.90 21.98 0.31 -30.50 16 11 Si 0.96 33.36 24.33 68.60 1.67 35.03 16 12 H -0.25 -9.02 5.72 99.48 0.57 -8.45 16 13 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 14 H -0.24 -8.11 6.52 99.48 0.65 -7.46 16 15 N -0.65 -24.76 2.23 -189.79 -0.42 -25.18 16 16 C 0.56 20.72 5.83 261.31 1.52 22.25 16 17 N -0.55 -19.84 8.97 -198.00 -1.78 -21.62 16 18 C 0.21 5.61 11.31 84.56 0.96 6.57 16 19 C -0.30 -7.18 6.38 -19.72 -0.13 -7.30 16 20 C 0.15 4.14 7.56 42.77 0.32 4.46 16 21 N -0.56 -18.64 9.73 -185.61 -1.81 -20.45 16 22 C 0.11 2.05 7.63 71.31 0.54 2.59 16 23 O -0.37 -7.04 11.72 -148.98 -1.75 -8.78 16 24 C 0.11 1.84 7.63 71.27 0.54 2.38 16 25 H 0.32 11.55 8.28 -92.71 -0.77 10.78 16 26 H 0.42 14.86 7.85 -92.71 -0.73 14.13 16 27 H 0.20 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -58.21 291.01 4.27 -53.94 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.31 Total: 15.45 kcal Atomic # 6 Polarization: 46.39 SS G_CDS: 7.04 Total: 53.42 kcal Atomic # 7 Polarization: -146.06 SS G_CDS: -3.00 Total: -149.06 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.75 Total: -8.78 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 1.67 Total: 35.03 kcal Total: -58.21 4.27 -53.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.508 kcal (2) G-P(sol) polarization free energy of solvation -58.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds