Wall clock time and date at job start Tue Mar 31 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48500 * 109.46995 * 239.99769 * 3 2 1 5 5 H 1.48500 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47396 * 119.99852 * 3 2 1 7 7 C 1.37881 * 119.99954 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.84848 * 0.02562 * 7 2 1 9 9 C 1.53223 * 108.53770 * 231.32761 * 8 7 2 10 10 C 1.52962 * 109.40170 * 305.37113 * 9 8 7 11 11 H 1.08997 * 109.41513 * 303.56246 * 10 9 8 12 12 N 1.46504 * 109.41259 * 183.70288 * 10 9 8 13 13 C 1.34777 * 119.99854 * 154.85656 * 12 10 9 14 14 O 1.21583 * 119.99947 * 0.02562 * 13 12 10 15 15 C 1.47662 * 120.00185 * 180.27903 * 13 12 10 16 16 N 1.31828 * 126.45983 * 359.41203 * 15 13 12 17 17 N 1.28472 * 110.13780 * 179.81990 * 16 15 13 18 18 H 0.96998 * 124.93397 * 180.14780 * 17 16 15 19 19 C 1.35639 * 110.12855 * 0.45716 * 17 16 15 20 20 C 1.35461 * 107.13256 * 359.72837 * 19 17 16 21 21 Cl 1.73607 * 127.23967 * 179.97438 * 20 19 17 22 22 C 1.52962 * 109.75868 * 63.63636 * 10 9 8 23 23 C 1.51264 * 120.85221 * 179.97438 * 7 2 1 24 24 H 0.97008 * 119.99821 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62538 * 111.61108 * 8 7 2 26 26 H 1.09007 * 109.62722 * 351.04101 * 8 7 2 27 27 H 1.09000 * 109.48107 * 185.39742 * 9 8 7 28 28 H 1.09001 * 109.49909 * 65.35475 * 9 8 7 29 29 H 0.97000 * 120.00410 * 334.86381 * 12 10 9 30 30 H 1.08002 * 126.43488 * 179.72184 * 19 17 16 31 31 H 1.08995 * 109.48426 * 56.34586 * 22 10 9 32 32 H 1.09002 * 109.47817 * 176.38491 * 22 10 9 33 33 H 1.09005 * 109.62777 * 248.39253 * 23 7 2 34 34 H 1.09007 * 109.62741 * 8.95885 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8227 -3.3826 1.1351 10 6 3.3397 -3.5070 0.9841 11 1 3.5738 -3.9112 -0.0008 12 7 3.8596 -4.4075 2.0161 13 6 5.0156 -5.0698 1.8125 14 8 5.6272 -4.9196 0.7725 15 6 5.5365 -5.9822 2.8501 16 7 4.9842 -6.2347 4.0202 17 7 5.6994 -7.0782 4.6740 18 1 5.4903 -7.4152 5.5592 19 6 6.7926 -7.4239 3.9494 20 6 6.7261 -6.7459 2.7786 21 17 7.8615 -6.8014 1.4664 22 6 3.9892 -2.1305 1.1363 23 6 3.5170 -1.2166 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 1.4199 -3.0193 -0.9538 26 1 0.2035 -2.3409 0.1600 27 1 1.3704 -4.3733 1.0899 28 1 1.5897 -2.9199 2.0942 29 1 3.3718 -4.5272 2.8460 30 1 7.5703 -8.1107 4.2496 31 1 3.7038 -1.6979 2.0952 32 1 5.0735 -2.2333 1.0920 33 1 3.8771 -1.6007 -0.9545 34 1 3.8982 -0.2078 0.1590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187845711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:30 Heat of formation + Delta-G solvation = -5.717471 kcal Electronic energy + Delta-G solvation = -19778.745257 eV Core-core repulsion = 16544.447184 eV Total energy + Delta-G solvation = -3234.298073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.72784 -40.67198 -38.38499 -37.46613 -35.38055 -33.63822 -32.65515 -31.67787 -31.45583 -29.10650 -25.54228 -23.71368 -23.28060 -22.72636 -21.29786 -21.02998 -19.69706 -18.39902 -17.66784 -17.06622 -16.93193 -16.41242 -15.63948 -15.55466 -15.39912 -14.92372 -14.64100 -14.52277 -14.09927 -13.92495 -13.41817 -13.07407 -12.77123 -12.67045 -12.64596 -12.52337 -12.00945 -11.86535 -11.69143 -11.58808 -11.17267 -10.83134 -10.68672 -10.58090 -10.53430 -9.98152 -9.85497 -8.16724 -6.10391 0.39036 0.87484 1.08105 1.40304 1.41868 1.49527 1.91955 2.28022 2.32567 2.41702 3.11567 3.42392 3.76235 3.99645 4.09315 4.19997 4.47233 4.50427 4.71397 4.77122 4.84533 4.96432 5.07798 5.13597 5.20883 5.23700 5.55863 5.57722 5.67577 5.76520 5.82905 5.98046 6.35559 6.48996 6.74558 6.94521 7.21985 7.47605 8.94034 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.003956 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.460005 B = 7075.556347 C = 7432.522766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.500 4.500 8 C 0.009 3.991 9 C -0.100 4.100 10 C 0.167 3.833 11 H 0.062 0.938 12 N -0.701 5.701 13 C 0.589 3.411 14 O -0.556 6.556 15 C -0.023 4.023 16 N -0.251 5.251 17 N -0.351 5.351 18 H 0.474 0.526 19 C 0.038 3.962 20 C -0.138 4.138 21 Cl -0.023 7.023 22 C -0.106 4.106 23 C -0.011 4.011 24 H 0.264 0.736 25 H -0.001 1.001 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.411 0.589 30 H 0.244 0.756 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.017 0.983 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.311 -16.867 13.424 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.519 4.519 8 C -0.029 4.029 9 C -0.139 4.139 10 C 0.063 3.937 11 H 0.080 0.920 12 N -0.351 5.351 13 C 0.373 3.627 14 O -0.432 6.432 15 C -0.184 4.184 16 N -0.089 5.089 17 N -0.070 5.070 18 H 0.325 0.675 19 C -0.108 4.108 20 C -0.175 4.175 21 Cl 0.005 6.995 22 C -0.145 4.145 23 C -0.049 4.049 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.248 0.752 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 12.743 -16.358 13.197 24.579 hybrid contribution 0.488 0.733 -0.128 0.889 sum 13.231 -15.625 13.069 24.290 Atomic orbital electron populations 1.69940 1.07436 1.27571 1.51770 1.25519 0.95339 1.01467 0.94779 0.85854 0.78412 0.79727 0.79365 1.19607 1.21755 1.19079 1.20580 0.90751 0.92077 1.48537 1.19297 0.97336 0.93265 0.92960 1.21705 0.92643 0.98980 1.00551 1.20709 0.93934 0.88648 0.90394 0.91961 1.46007 1.23216 1.44475 1.21428 1.17228 0.80973 0.79287 0.85184 1.90811 1.59023 1.65742 1.27636 1.21746 0.97305 1.04583 0.94751 1.73599 1.21121 1.09163 1.04985 1.43418 1.15589 1.30136 1.17873 0.67466 1.23343 0.94598 1.02621 0.90243 1.21127 0.95705 1.05901 0.94779 1.98363 1.57476 1.97718 1.45893 1.21795 0.97593 0.95385 0.99722 1.19617 0.95112 0.95343 0.94823 0.92686 0.98211 0.94626 0.92312 0.92492 0.75237 0.73977 0.92719 0.94010 0.96449 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.37 12.73 21.45 0.27 -54.09 16 2 C 0.03 1.53 5.46 84.66 0.46 1.99 16 3 Si 0.94 44.24 26.80 68.60 1.84 46.08 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.50 -26.74 5.51 -16.17 -0.09 -26.83 16 8 C 0.01 0.47 5.97 30.10 0.18 0.65 16 9 C -0.10 -4.12 5.40 30.66 0.17 -3.96 16 10 C 0.17 6.67 2.35 44.97 0.11 6.77 16 11 H 0.06 2.75 7.57 -2.39 -0.02 2.73 16 12 N -0.70 -23.50 5.07 -445.69 -2.26 -25.76 16 13 C 0.59 20.50 7.79 86.73 0.68 21.17 16 14 O -0.56 -23.07 15.54 -3.98 -0.06 -23.13 16 15 C -0.02 -0.63 7.13 42.45 0.30 -0.33 16 16 N -0.25 -5.19 11.91 -48.17 -0.57 -5.76 16 17 N -0.35 -3.71 6.86 -57.09 -0.39 -4.10 16 18 H 0.47 0.47 8.96 -219.99 -1.97 -1.50 16 19 C 0.04 0.42 12.05 83.46 1.01 1.43 16 20 C -0.14 -3.08 6.80 22.44 0.15 -2.92 16 21 Cl -0.02 -0.57 28.17 -2.72 -0.08 -0.65 16 22 C -0.11 -4.51 5.50 30.68 0.17 -4.34 16 23 C -0.01 -0.52 5.60 30.12 0.17 -0.35 16 24 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 25 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.04 1.95 7.07 -2.38 -0.02 1.94 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.41 11.83 8.32 -92.71 -0.77 11.06 16 30 H 0.24 0.14 8.06 -2.91 -0.02 0.12 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.03 1.29 5.17 -2.38 -0.01 1.27 16 Total: -1.00 -71.76 300.28 0.46 -71.30 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -1.58 Total: 2.83 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.30 Total: -6.71 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.95 Total: -89.72 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.84 Total: 46.08 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -71.76 0.46 -71.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187845711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.582 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds