Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 108.45298 * 2 1 4 4 C 1.47097 * 108.50935 * 242.31164 * 2 1 3 5 5 C 1.54862 * 110.31920 * 176.10430 * 4 2 1 6 6 N 1.44575 * 109.60722 * 71.26951 * 5 4 2 7 7 S 1.65593 * 118.64741 * 89.24951 * 6 5 4 8 8 O 1.42097 * 106.40438 * 208.24856 * 7 6 5 9 9 O 1.42100 * 106.40380 * 341.16998 * 7 6 5 10 10 C 1.76199 * 107.22068 * 94.70776 * 7 6 5 11 11 H 1.07997 * 119.99562 * 358.98528 * 10 7 6 12 12 C 1.37868 * 120.00171 * 178.97880 * 10 7 6 13 13 N 1.31522 * 120.00252 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00167 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46945 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47249 * 120.00043 * 14 12 10 17 17 H 1.48505 * 109.47134 * 240.00093 * 14 12 10 18 18 C 1.47606 * 122.71129 * 269.27253 * 6 5 4 19 19 C 1.53957 * 112.13871 * 42.12682 * 18 6 5 20 20 C 1.50880 * 109.99091 * 40.63140 * 19 18 6 21 21 F 1.39898 * 109.49312 * 28.00804 * 20 19 18 22 22 F 1.39904 * 109.49104 * 148.08405 * 20 19 18 23 23 H 1.09003 * 109.47475 * 177.68981 * 1 2 3 24 24 H 1.09008 * 109.47116 * 297.68702 * 1 2 3 25 25 H 1.08996 * 109.47600 * 57.68846 * 1 2 3 26 26 H 1.08997 * 109.33076 * 55.84273 * 4 2 1 27 27 H 1.09001 * 109.33316 * 296.36336 * 4 2 1 28 28 H 1.09000 * 109.45271 * 311.22649 * 5 4 2 29 29 H 1.09001 * 109.44972 * 191.30796 * 5 4 2 30 30 H 0.97001 * 119.99913 * 180.02562 * 13 12 10 31 31 H 1.08997 * 108.95193 * 281.45024 * 18 6 5 32 32 H 1.08997 * 108.87824 * 162.76320 * 18 6 5 33 33 H 1.08996 * 109.36387 * 160.75795 * 19 18 6 34 34 H 1.08999 * 109.36778 * 280.50094 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8749 1.0339 0.0000 4 6 1.9969 -0.6481 -1.2352 5 6 3.5416 -0.5840 -1.3252 6 7 4.1221 -1.4782 -0.3487 7 16 4.4110 -3.0496 -0.7841 8 8 4.3253 -3.8185 0.4078 9 8 3.6109 -3.3018 -1.9310 10 6 6.0879 -3.1433 -1.3170 11 1 6.7020 -2.2549 -1.3260 12 6 6.6160 -4.3506 -1.7222 13 7 5.8681 -5.4324 -1.7116 14 14 8.3940 -4.4501 -2.2865 15 1 9.0154 -3.1038 -2.2044 16 1 9.1386 -5.3925 -1.4132 17 1 8.4416 -4.9331 -3.6900 18 6 4.4673 -1.0485 1.0205 19 6 3.3814 -0.1481 1.6372 20 6 2.0125 -0.6743 1.2826 21 9 2.0801 -2.0582 1.0888 22 9 1.1199 -0.3911 2.3220 23 1 -0.3634 -1.0268 -0.0414 24 1 -0.3634 0.4775 0.9101 25 1 -0.3634 0.5493 -0.8685 26 1 1.5638 -0.1387 -2.0959 27 1 1.6784 -1.6906 -1.2383 28 1 3.8747 0.4348 -1.1276 29 1 3.8596 -0.8820 -2.3244 30 1 6.2398 -6.2819 -1.9964 31 1 5.4084 -0.4992 0.9924 32 1 4.5921 -1.9320 1.6465 33 1 3.4944 -0.1363 2.7212 34 1 3.4902 0.8655 1.2514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -189.876853 kcal Electronic energy + Delta-G solvation = -22564.392857 eV Core-core repulsion = 18873.463554 eV Total energy + Delta-G solvation = -3690.929303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.72621 -46.61692 -37.94776 -35.27757 -34.27489 -33.86376 -33.04928 -31.95400 -28.27186 -26.10139 -25.26326 -23.66070 -20.96277 -20.27040 -18.76299 -17.41276 -17.05687 -16.69853 -16.22522 -16.17853 -15.03310 -14.88849 -14.34973 -13.98470 -13.72050 -13.46287 -13.19569 -13.03025 -12.99285 -12.71772 -12.47406 -12.03602 -12.00639 -11.74793 -11.66120 -11.23166 -11.20248 -11.06860 -10.79708 -10.69436 -10.57989 -10.29399 -10.18618 -9.99787 -9.96029 -9.24594 -8.85432 -8.20792 -6.68037 -5.30628 2.30528 3.05467 3.13754 3.20647 3.93790 4.06058 4.26665 4.43341 4.51439 4.64962 4.67088 5.00105 5.02304 5.32676 5.49349 5.59930 5.60937 5.65515 5.69819 5.76331 5.89840 5.98422 6.01796 6.08513 6.16816 6.18823 6.27453 6.44094 6.66136 6.75512 7.33349 7.64681 7.98377 8.90458 10.25357 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.006318 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.379438 B = 4430.646914 C = 4516.828580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.142 4.142 5 C 0.129 3.871 6 N -1.007 6.007 7 S 2.715 3.285 8 O -0.998 6.998 9 O -1.002 7.002 10 C -1.025 5.025 11 H 0.101 0.899 12 C 0.132 3.868 13 N -0.845 5.845 14 Si 0.919 3.081 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.126 3.874 19 C -0.172 4.172 20 C 0.298 3.702 21 F -0.183 7.183 22 F -0.206 7.206 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.290 0.710 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 13.018 3.301 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 H 0.109 0.891 4 C -0.182 4.182 5 C 0.002 3.998 6 N -0.842 5.842 7 S 2.815 3.185 8 O -0.988 6.988 9 O -0.992 6.992 10 C -1.158 5.158 11 H 0.120 0.880 12 C -0.086 4.086 13 N -0.475 5.475 14 Si 0.743 3.257 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.196 1.196 18 C 0.000 4.000 19 C -0.212 4.212 20 C 0.262 3.738 21 F -0.164 7.164 22 F -0.187 7.187 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.383 12.144 3.351 13.700 hybrid contribution 1.378 0.140 -0.287 1.414 sum -4.006 12.284 3.063 13.279 Atomic orbital electron populations 1.21982 0.93833 1.03024 1.02509 1.21033 0.97986 1.01037 0.94143 0.89117 1.21370 0.97809 1.03208 0.95789 1.21055 0.91271 0.94555 0.92930 1.57691 1.77666 1.31549 1.17247 1.00618 0.75918 0.69074 0.72882 1.93342 1.89004 1.66606 1.49849 1.93345 1.71703 1.82372 1.51829 1.30720 1.22771 1.01985 1.60288 0.88040 1.24759 1.00211 0.93571 0.90022 1.69916 1.37749 1.00673 1.39126 0.86163 0.81518 0.79220 0.78837 1.18629 1.19572 1.19575 1.21349 0.95351 0.99850 0.83488 1.22833 0.93075 1.01696 1.03591 1.20405 0.88995 0.78452 0.85996 1.93078 1.96755 1.31312 1.95288 1.92955 1.71244 1.93469 1.61072 0.91995 0.91747 0.91719 0.89857 0.89857 0.91386 0.89423 0.89956 0.91360 0.88210 0.88584 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.65 37.15 0.32 -1.54 16 2 C -0.12 -1.62 2.05 -93.59 -0.19 -1.81 16 3 H 0.09 0.94 7.36 -51.93 -0.38 0.56 16 4 C -0.14 -2.16 4.65 -28.58 -0.13 -2.29 16 5 C 0.13 2.10 5.24 -4.09 -0.02 2.08 16 6 N -1.01 -19.94 1.96 -113.30 -0.22 -20.16 16 7 S 2.71 72.51 4.52 -107.50 -0.49 72.02 16 8 O -1.00 -29.45 16.24 -57.17 -0.93 -30.38 16 9 O -1.00 -29.02 16.31 -57.17 -0.93 -29.95 16 10 C -1.02 -28.30 9.74 30.60 0.30 -28.00 16 11 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 12 C 0.13 3.71 5.46 -17.82 -0.10 3.62 16 13 N -0.84 -25.11 13.19 55.43 0.73 -24.38 16 14 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 15 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.13 2.09 5.74 -2.94 -0.02 2.07 16 19 C -0.17 -2.27 5.45 -27.30 -0.15 -2.42 16 20 C 0.30 4.63 1.76 -27.93 -0.05 4.58 16 21 F -0.18 -3.74 13.51 2.25 0.03 -3.71 16 22 F -0.21 -3.13 15.38 2.25 0.03 -3.10 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.72 7.15 -51.92 -0.37 0.35 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 27 H 0.08 1.56 7.11 -51.93 -0.37 1.19 16 28 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.09 1.51 7.54 -51.93 -0.39 1.12 16 30 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.88 6.75 -51.93 -0.35 1.53 16 33 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.09 0.94 7.31 -51.93 -0.38 0.56 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -35.11 288.73 -6.80 -41.91 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.32 Total: 1.57 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.51 Total: -44.54 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.86 Total: -60.33 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.07 Total: -6.81 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 72.51 SS G_CDS: -0.49 Total: 72.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.11 -6.80 -41.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.969 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds