Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 108.45298 * 2 1 4 4 C 1.47097 * 108.50935 * 242.31164 * 2 1 3 5 5 C 1.54862 * 110.31920 * 176.10430 * 4 2 1 6 6 N 1.44575 * 109.60722 * 71.26951 * 5 4 2 7 7 S 1.65593 * 118.64741 * 89.24951 * 6 5 4 8 8 O 1.42097 * 106.40438 * 208.24856 * 7 6 5 9 9 O 1.42100 * 106.40380 * 341.16998 * 7 6 5 10 10 C 1.76199 * 107.22068 * 94.70776 * 7 6 5 11 11 H 1.07997 * 119.99562 * 358.98528 * 10 7 6 12 12 C 1.37868 * 120.00171 * 178.97880 * 10 7 6 13 13 N 1.31522 * 120.00252 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00167 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46945 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47249 * 120.00043 * 14 12 10 17 17 H 1.48505 * 109.47134 * 240.00093 * 14 12 10 18 18 C 1.47606 * 122.71129 * 269.27253 * 6 5 4 19 19 C 1.53957 * 112.13871 * 42.12682 * 18 6 5 20 20 C 1.50880 * 109.99091 * 40.63140 * 19 18 6 21 21 F 1.39898 * 109.49312 * 28.00804 * 20 19 18 22 22 F 1.39904 * 109.49104 * 148.08405 * 20 19 18 23 23 H 1.09003 * 109.47475 * 177.68981 * 1 2 3 24 24 H 1.09008 * 109.47116 * 297.68702 * 1 2 3 25 25 H 1.08996 * 109.47600 * 57.68846 * 1 2 3 26 26 H 1.08997 * 109.33076 * 55.84273 * 4 2 1 27 27 H 1.09001 * 109.33316 * 296.36336 * 4 2 1 28 28 H 1.09000 * 109.45271 * 311.22649 * 5 4 2 29 29 H 1.09001 * 109.44972 * 191.30796 * 5 4 2 30 30 H 0.97001 * 119.99913 * 180.02562 * 13 12 10 31 31 H 1.08997 * 108.95193 * 281.45024 * 18 6 5 32 32 H 1.08997 * 108.87824 * 162.76320 * 18 6 5 33 33 H 1.08996 * 109.36387 * 160.75795 * 19 18 6 34 34 H 1.08999 * 109.36778 * 280.50094 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8749 1.0339 0.0000 4 6 1.9969 -0.6481 -1.2352 5 6 3.5416 -0.5840 -1.3252 6 7 4.1221 -1.4782 -0.3487 7 16 4.4110 -3.0496 -0.7841 8 8 4.3253 -3.8185 0.4078 9 8 3.6109 -3.3018 -1.9310 10 6 6.0879 -3.1433 -1.3170 11 1 6.7020 -2.2549 -1.3260 12 6 6.6160 -4.3506 -1.7222 13 7 5.8681 -5.4324 -1.7116 14 14 8.3940 -4.4501 -2.2865 15 1 9.0154 -3.1038 -2.2044 16 1 9.1386 -5.3925 -1.4132 17 1 8.4416 -4.9331 -3.6900 18 6 4.4673 -1.0485 1.0205 19 6 3.3814 -0.1481 1.6372 20 6 2.0125 -0.6743 1.2826 21 9 2.0801 -2.0582 1.0888 22 9 1.1199 -0.3911 2.3220 23 1 -0.3634 -1.0268 -0.0414 24 1 -0.3634 0.4775 0.9101 25 1 -0.3634 0.5493 -0.8685 26 1 1.5638 -0.1387 -2.0959 27 1 1.6784 -1.6906 -1.2383 28 1 3.8747 0.4348 -1.1276 29 1 3.8596 -0.8820 -2.3244 30 1 6.2398 -6.2819 -1.9964 31 1 5.4084 -0.4992 0.9924 32 1 4.5921 -1.9320 1.6465 33 1 3.4944 -0.1363 2.7212 34 1 3.4902 0.8655 1.2514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -216.208467 kcal Electronic energy + Delta-G solvation = -22565.534681 eV Core-core repulsion = 18873.463554 eV Total energy + Delta-G solvation = -3692.071128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.97559 -47.91722 -39.19236 -37.41538 -36.04301 -35.54054 -35.13217 -33.17250 -29.43549 -28.24039 -26.53284 -24.79718 -22.31261 -21.39929 -20.75914 -18.97185 -18.53507 -18.18097 -17.89824 -17.48457 -16.98198 -16.36613 -15.92999 -15.49684 -15.28683 -14.76011 -14.56147 -14.37514 -14.26220 -13.98778 -13.94143 -13.67220 -13.39479 -13.19921 -13.03295 -12.87391 -12.85625 -12.54081 -12.40984 -12.27194 -12.09407 -11.94725 -11.85102 -11.55610 -11.28953 -11.27241 -10.88128 -9.73740 -8.74091 -7.49033 0.37020 1.32616 1.33150 1.51279 2.20585 2.57385 2.74471 2.94462 3.25552 3.40907 3.44724 3.80856 3.91131 3.96099 4.17669 4.30226 4.39959 4.51909 4.57872 4.63292 4.71868 4.79161 4.82961 4.86015 4.94676 5.00915 5.04720 5.21799 5.25661 5.34231 5.41958 5.90277 6.13029 6.77840 8.20948 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.006318 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.379438 B = 4430.646914 C = 4516.828580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 H 0.138 0.862 4 C -0.141 4.141 5 C 0.116 3.884 6 N -1.000 6.000 7 S 2.714 3.286 8 O -1.042 7.042 9 O -1.041 7.041 10 C -1.044 5.044 11 H 0.122 0.878 12 C 0.065 3.935 13 N -0.898 5.898 14 Si 0.991 3.009 15 H -0.243 1.243 16 H -0.260 1.260 17 H -0.259 1.259 18 C 0.115 3.885 19 C -0.163 4.163 20 C 0.277 3.723 21 F -0.222 7.222 22 F -0.207 7.207 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.033 0.967 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.298 0.702 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 16.609 3.138 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 H 0.156 0.844 4 C -0.180 4.180 5 C -0.009 4.009 6 N -0.838 5.838 7 S 2.816 3.184 8 O -1.032 7.032 9 O -1.031 7.031 10 C -1.177 5.177 11 H 0.140 0.860 12 C -0.147 4.147 13 N -0.530 5.530 14 Si 0.809 3.191 15 H -0.165 1.165 16 H -0.184 1.184 17 H -0.183 1.183 18 C -0.010 4.010 19 C -0.202 4.202 20 C 0.241 3.759 21 F -0.203 7.203 22 F -0.188 7.188 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.134 0.866 27 H 0.052 0.948 28 H 0.142 0.858 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.056 15.741 3.197 16.566 hybrid contribution 0.865 -0.920 -0.189 1.277 sum -3.191 14.820 3.008 15.455 Atomic orbital electron populations 1.21984 0.93209 1.01833 1.04178 1.21108 0.98609 1.02654 0.91641 0.84419 1.21372 0.97252 1.00948 0.98423 1.21454 0.91899 0.96306 0.91264 1.57106 1.77909 1.29559 1.19216 1.00175 0.75741 0.70744 0.71705 1.93273 1.89378 1.69488 1.51080 1.93278 1.72486 1.84134 1.53192 1.31109 1.23540 1.03004 1.60046 0.86034 1.26107 1.05848 0.92982 0.89729 1.70028 1.40466 1.01771 1.40723 0.85096 0.74738 0.80420 0.78859 1.16531 1.18422 1.18319 1.21628 0.98487 0.99622 0.81241 1.22888 0.89870 1.02706 1.04720 1.21123 0.90667 0.76767 0.87390 1.93016 1.96994 1.34755 1.95580 1.92946 1.71415 1.93236 1.61189 0.94761 0.90865 0.89147 0.86616 0.94830 0.85767 0.91152 0.89220 0.87860 0.91701 0.86815 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.65 71.98 0.62 -2.73 16 2 C -0.12 -2.83 2.05 -12.72 -0.03 -2.85 16 3 H 0.14 1.97 7.36 -2.39 -0.02 1.95 16 4 C -0.14 -4.04 4.65 29.39 0.14 -3.90 16 5 C 0.12 3.53 5.24 87.37 0.46 3.99 16 6 N -1.00 -38.96 1.96 -512.38 -1.00 -39.97 16 7 S 2.71 150.44 4.52 -56.49 -0.26 150.18 16 8 O -1.04 -65.09 16.24 -128.00 -2.08 -67.17 16 9 O -1.04 -63.48 16.31 -128.00 -2.09 -65.57 16 10 C -1.04 -58.26 9.74 67.73 0.66 -57.60 16 11 H 0.12 6.02 7.81 -2.91 -0.02 6.00 16 12 C 0.07 3.71 5.46 84.65 0.46 4.17 16 13 N -0.90 -55.24 13.19 21.45 0.28 -54.95 16 14 Si 0.99 41.53 29.54 68.60 2.03 43.56 16 15 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 18 C 0.11 3.63 5.74 86.49 0.50 4.12 16 19 C -0.16 -3.71 5.45 30.23 0.16 -3.54 16 20 C 0.28 8.12 1.76 29.82 0.05 8.18 16 21 F -0.22 -9.42 13.51 44.97 0.61 -8.81 16 22 F -0.21 -5.93 15.38 44.97 0.69 -5.24 16 23 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 1.45 7.15 -2.38 -0.02 1.43 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.12 2.51 8.12 -2.39 -0.02 2.49 16 27 H 0.03 1.30 7.11 -2.39 -0.02 1.28 16 28 H 0.12 2.40 8.07 -2.39 -0.02 2.38 16 29 H 0.07 2.37 7.54 -2.39 -0.02 2.35 16 30 H 0.30 16.39 8.31 -92.71 -0.77 15.62 16 31 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.06 2.50 6.75 -2.39 -0.02 2.48 16 33 H 0.11 2.21 8.07 -2.39 -0.02 2.19 16 34 H 0.14 1.88 7.31 -2.39 -0.02 1.86 16 Total: -1.00 -83.33 288.73 2.32 -81.01 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.11 Total: 17.13 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 3.03 Total: -50.17 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -0.72 Total: -94.92 kcal Atomic # 8 Polarization: -128.57 SS G_CDS: -4.17 Total: -132.74 kcal Atomic # 9 Polarization: -15.35 SS G_CDS: 1.30 Total: -14.05 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 150.44 SS G_CDS: -0.26 Total: 150.18 kcal Total: -83.33 2.32 -81.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.195 kcal (2) G-P(sol) polarization free energy of solvation -83.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds