Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 108.45293 * 2 1 4 4 C 1.47091 * 108.51255 * 117.68837 * 2 1 3 5 5 C 1.54864 * 110.32263 * 184.05372 * 4 2 1 6 6 N 1.44586 * 109.60241 * 288.73242 * 5 4 2 7 7 S 1.65600 * 118.64253 * 270.70646 * 6 5 4 8 8 O 1.42097 * 106.40505 * 23.55973 * 7 6 5 9 9 O 1.42106 * 106.39789 * 156.48034 * 7 6 5 10 10 C 1.76203 * 107.21623 * 270.01830 * 7 6 5 11 11 H 1.07997 * 120.00179 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99939 * 180.02562 * 10 7 6 13 13 N 1.31520 * 119.99983 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99945 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46993 * 59.99658 * 14 12 10 16 16 H 1.48500 * 109.46829 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46918 * 299.99461 * 14 12 10 18 18 C 1.47598 * 122.71020 * 90.72620 * 6 5 4 19 19 C 1.53947 * 112.14221 * 317.86953 * 18 6 5 20 20 C 1.50880 * 110.09719 * 319.43744 * 19 18 6 21 21 F 1.39907 * 109.48908 * 211.85360 * 20 19 18 22 22 F 1.39896 * 109.48796 * 331.92113 * 20 19 18 23 23 H 1.09002 * 109.47016 * 302.31523 * 1 2 3 24 24 H 1.09000 * 109.47248 * 62.30707 * 1 2 3 25 25 H 1.08994 * 109.47432 * 182.31128 * 1 2 3 26 26 H 1.09004 * 109.32831 * 63.79455 * 4 2 1 27 27 H 1.08998 * 109.33306 * 304.31437 * 4 2 1 28 28 H 1.09008 * 109.44937 * 168.69638 * 5 4 2 29 29 H 1.08998 * 109.45194 * 48.77325 * 5 4 2 30 30 H 0.96994 * 119.99702 * 180.02562 * 13 12 10 31 31 H 1.09001 * 108.95113 * 197.18501 * 18 6 5 32 32 H 1.09005 * 108.94744 * 78.55404 * 18 6 5 33 33 H 1.09005 * 109.36785 * 79.62886 * 19 18 6 34 34 H 1.08999 * 109.37367 * 199.24170 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8750 1.0339 0.0000 4 6 1.9970 -0.6481 1.2351 5 6 3.5414 -0.5805 1.3271 6 7 4.1251 -1.4726 0.3504 7 16 4.4181 -3.0434 0.7851 8 8 3.5368 -3.3330 1.8615 9 8 4.4456 -3.7949 -0.4206 10 6 6.0497 -3.1055 1.4475 11 1 6.6447 -2.2059 1.5028 12 6 6.5668 -4.3026 1.8953 13 7 5.8420 -5.3981 1.8284 14 14 8.2963 -4.3684 2.5982 15 1 8.3842 -3.4747 3.7810 16 1 8.6122 -5.7609 3.0059 17 1 9.2670 -3.9217 1.5670 18 6 4.4709 -1.0408 -1.0180 19 6 3.3837 -0.1425 -1.6352 20 6 2.0144 -0.6691 -1.2827 21 9 1.1230 -0.3848 -2.3229 22 9 2.0819 -2.0531 -1.0905 23 1 -0.3633 0.5494 0.8685 24 1 -0.3634 0.4776 -0.9099 25 1 -0.3634 -1.0267 0.0414 26 1 1.6808 -1.6913 1.2369 27 1 1.5618 -0.1404 2.0958 28 1 3.8589 -0.8787 2.3264 29 1 3.8724 0.4393 1.1307 30 1 6.2057 -6.2402 2.1438 31 1 4.5996 -1.9227 -1.6456 32 1 5.4108 -0.4894 -0.9883 33 1 3.4911 0.8716 -1.2501 34 1 3.4979 -0.1293 -2.7191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = -216.374955 kcal Electronic energy + Delta-G solvation = -22561.618787 eV Core-core repulsion = 18869.540439 eV Total energy + Delta-G solvation = -3692.078347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.98919 -47.92943 -39.19281 -37.42308 -36.04685 -35.54137 -35.12821 -33.17834 -29.42711 -28.24536 -26.54054 -24.80001 -22.31801 -21.40183 -20.75792 -18.97597 -18.53594 -18.19405 -17.89856 -17.48393 -16.98037 -16.38144 -15.92510 -15.49729 -15.28294 -14.76700 -14.56831 -14.38470 -14.26792 -13.98942 -13.93271 -13.67653 -13.40264 -13.21268 -12.99360 -12.88783 -12.85119 -12.54554 -12.41060 -12.32349 -12.10131 -11.93880 -11.85122 -11.54634 -11.29398 -11.23631 -10.90163 -9.73862 -8.73799 -7.49193 0.36582 1.33143 1.35713 1.48819 2.20727 2.57717 2.74030 2.94416 3.24973 3.40329 3.44317 3.81771 3.91084 3.96133 4.17357 4.28719 4.40224 4.52907 4.57883 4.63529 4.71719 4.79281 4.83035 4.85773 4.94508 5.01274 5.04835 5.21477 5.25915 5.34386 5.43611 5.89587 6.12966 6.77614 8.20884 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.006306 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.096070 B = 4439.363765 C = 4519.029855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 H 0.137 0.863 4 C -0.141 4.141 5 C 0.117 3.883 6 N -1.000 6.000 7 S 2.715 3.285 8 O -1.040 7.040 9 O -1.044 7.044 10 C -1.046 5.046 11 H 0.122 0.878 12 C 0.066 3.934 13 N -0.898 5.898 14 Si 0.991 3.009 15 H -0.247 1.247 16 H -0.265 1.265 17 H -0.248 1.248 18 C 0.114 3.886 19 C -0.163 4.163 20 C 0.278 3.722 21 F -0.206 7.206 22 F -0.224 7.224 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.298 0.702 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 16.615 -3.031 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 H 0.155 0.845 4 C -0.181 4.181 5 C -0.008 4.008 6 N -0.838 5.838 7 S 2.817 3.183 8 O -1.030 7.030 9 O -1.034 7.034 10 C -1.179 5.179 11 H 0.140 0.860 12 C -0.146 4.146 13 N -0.530 5.530 14 Si 0.808 3.192 15 H -0.170 1.170 16 H -0.189 1.189 17 H -0.172 1.172 18 C -0.011 4.011 19 C -0.202 4.202 20 C 0.242 3.758 21 F -0.187 7.187 22 F -0.205 7.205 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.158 0.842 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.100 15.725 -3.155 16.554 hybrid contribution 0.845 -0.876 0.265 1.245 sum -3.255 14.850 -2.890 15.474 Atomic orbital electron populations 1.21980 0.93189 1.01837 1.04171 1.21074 0.98617 1.02684 0.91660 0.84481 1.21376 0.97226 1.01107 0.98350 1.21453 0.91889 0.96351 0.91148 1.57099 1.77781 1.29649 1.19249 1.00154 0.75519 0.70752 0.71878 1.93278 1.68687 1.83512 1.57504 1.93268 1.89586 1.70236 1.50304 1.31072 1.25821 1.02963 1.58019 0.85997 1.26107 1.04880 0.92887 0.90757 1.70016 1.40657 1.01575 1.40723 0.85164 0.75174 0.79072 0.79783 1.17037 1.18940 1.17153 1.21630 0.98466 0.99659 0.81343 1.22881 0.89841 1.02726 1.04744 1.21093 0.90696 0.76654 0.87393 1.92948 1.71476 1.93202 1.61123 1.93002 1.97011 1.34900 1.95612 0.89151 0.90870 0.94751 0.94608 0.86671 0.91202 0.85778 0.89200 0.91607 0.87884 0.84232 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.66 71.98 0.62 -2.73 16 2 C -0.12 -2.84 2.04 -12.77 -0.03 -2.87 16 3 H 0.14 1.97 7.35 -2.39 -0.02 1.95 16 4 C -0.14 -4.07 4.63 29.39 0.14 -3.93 16 5 C 0.12 3.55 5.24 87.37 0.46 4.01 16 6 N -1.00 -38.98 1.96 -512.37 -1.01 -39.99 16 7 S 2.72 150.60 4.52 -56.49 -0.26 150.34 16 8 O -1.04 -63.56 16.26 -128.00 -2.08 -65.64 16 9 O -1.04 -65.16 16.39 -128.00 -2.10 -67.26 16 10 C -1.05 -58.36 9.75 67.73 0.66 -57.70 16 11 H 0.12 6.00 7.81 -2.91 -0.02 5.98 16 12 C 0.07 3.74 5.46 84.65 0.46 4.20 16 13 N -0.90 -55.27 13.19 21.45 0.28 -54.99 16 14 Si 0.99 41.46 29.54 68.60 2.03 43.48 16 15 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 16 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 18 C 0.11 3.60 5.75 86.49 0.50 4.09 16 19 C -0.16 -3.71 5.44 30.22 0.16 -3.54 16 20 C 0.28 8.15 1.76 29.76 0.05 8.20 16 21 F -0.21 -5.90 15.38 44.97 0.69 -5.21 16 22 F -0.22 -9.47 13.79 44.97 0.62 -8.85 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.45 7.15 -2.39 -0.02 1.43 16 25 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.04 1.39 6.91 -2.39 -0.02 1.37 16 27 H 0.12 2.51 8.11 -2.39 -0.02 2.49 16 28 H 0.07 2.34 7.67 -2.38 -0.02 2.33 16 29 H 0.12 2.39 8.06 -2.39 -0.02 2.37 16 30 H 0.30 16.50 8.31 -92.71 -0.77 15.72 16 31 H 0.07 2.54 6.66 -2.39 -0.02 2.53 16 32 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.14 1.88 7.31 -2.38 -0.02 1.86 16 34 H 0.11 2.21 8.07 -2.39 -0.02 2.19 16 Total: -1.00 -83.22 288.92 2.32 -80.90 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.11 Total: 17.48 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 3.03 Total: -50.27 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -0.72 Total: -94.98 kcal Atomic # 8 Polarization: -128.72 SS G_CDS: -4.18 Total: -132.90 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 1.31 Total: -14.06 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 150.60 SS G_CDS: -0.26 Total: 150.34 kcal Total: -83.22 2.32 -80.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.473 kcal (2) G-P(sol) polarization free energy of solvation -83.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds