Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 117.00454 * 2 1 4 4 O 1.21514 * 119.99794 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00021 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46877 * 269.72057 * 6 5 3 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99848 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46938 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47198 * 120.00527 * 11 9 7 14 14 H 1.48498 * 109.47360 * 240.00281 * 11 9 7 15 15 C 1.46499 * 120.00036 * 359.72179 * 5 3 2 16 16 C 1.50703 * 109.47126 * 270.27831 * 15 5 3 17 17 C 1.38245 * 119.98472 * 269.72505 * 16 15 5 18 18 C 1.38212 * 120.01135 * 179.72337 * 17 16 15 19 19 C 1.38352 * 119.98586 * 0.55387 * 18 17 16 20 20 Cl 1.73602 * 120.01400 * 179.70095 * 19 18 17 21 21 C 1.38348 * 119.97511 * 359.72260 * 19 18 17 22 22 C 1.38223 * 119.98610 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47205 * 59.99362 * 1 2 3 24 24 H 1.08997 * 109.47628 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46751 * 299.99989 * 1 2 3 26 26 H 1.09000 * 109.46803 * 29.71536 * 6 5 3 27 27 H 1.09000 * 109.47214 * 149.72329 * 6 5 3 28 28 H 0.96998 * 119.99944 * 179.97438 * 10 9 7 29 29 H 1.08994 * 109.47173 * 30.28203 * 15 5 3 30 30 H 1.09005 * 109.47077 * 150.28374 * 15 5 3 31 31 H 1.08002 * 119.99771 * 0.02562 * 17 16 15 32 32 H 1.08004 * 120.01036 * 180.27398 * 18 17 16 33 33 H 1.08000 * 120.01221 * 179.97438 * 21 19 18 34 34 H 1.07996 * 119.99041 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.0744 2.5753 0.0000 7 6 4.3080 3.0206 -1.4206 8 1 3.9922 2.3941 -2.2417 9 6 4.9240 4.2282 -1.6721 10 7 5.3082 4.9912 -0.6721 11 14 5.2143 4.7799 -3.4330 12 1 4.6939 3.7490 -4.3668 13 1 4.5091 6.0647 -3.6718 14 1 6.6701 4.9646 -3.6603 15 6 4.2070 0.0413 0.0051 16 6 4.4750 -0.3772 1.4278 17 6 5.6051 0.0785 2.0808 18 6 5.8484 -0.3003 3.3875 19 6 4.9668 -1.1449 4.0382 20 17 5.2758 -1.6275 5.6770 21 6 3.8390 -1.6052 3.3823 22 6 3.5934 -1.2207 2.0776 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.4443 3.3039 0.5102 27 1 5.0303 2.4958 0.5177 28 1 5.7419 5.8406 -0.8490 29 1 3.6605 -0.7491 -0.5094 30 1 5.1534 0.2203 -0.5053 31 1 6.2954 0.7346 1.5715 32 1 6.7290 0.0593 3.8991 33 1 3.1505 -2.2649 3.8896 34 1 2.7133 -1.5803 1.5654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193895199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -63.157948 kcal Electronic energy + Delta-G solvation = -19888.148485 eV Core-core repulsion = 16619.066855 eV Total energy + Delta-G solvation = -3269.081630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95560 -39.08157 -36.66035 -36.15289 -34.93302 -32.78497 -30.99845 -30.97865 -28.09658 -26.86757 -25.45414 -23.15810 -22.58192 -21.49449 -19.74910 -17.54847 -17.01096 -16.55653 -16.33075 -15.73440 -15.30636 -15.15770 -14.72089 -13.88208 -13.61206 -13.52944 -13.42873 -13.21193 -12.87519 -12.25050 -11.91913 -11.73302 -11.60996 -11.39188 -11.30793 -11.16110 -10.91990 -10.77912 -10.62387 -10.28400 -10.22341 -9.74610 -9.61502 -8.94189 -8.55662 -8.48559 -7.87258 -6.10491 -4.15648 1.18110 1.39598 2.13583 2.92702 3.27100 3.35128 3.39351 3.57548 3.73633 4.38536 4.70998 4.85658 4.95563 5.05517 5.24321 5.34354 5.41052 5.48379 5.50109 5.68318 5.73879 5.76470 6.04839 6.09819 6.28796 6.32076 6.56516 6.69445 6.89602 7.03449 7.37516 7.40465 7.85622 8.13742 8.25557 8.84501 9.10414 9.50206 10.97568 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.004994 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.731495 B = 5605.372519 C = 6819.958928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.383 6.383 3 C 0.640 3.360 4 O -0.567 6.567 5 N -0.572 5.572 6 C 0.260 3.740 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.899 3.101 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.153 3.847 16 C -0.093 4.093 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.036 4.036 20 Cl -0.083 7.083 21 C -0.118 4.118 22 C -0.090 4.090 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 -14.922 6.917 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.298 6.298 3 C 0.393 3.607 4 O -0.456 6.456 5 N -0.310 5.310 6 C 0.142 3.858 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.727 3.273 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.030 3.970 16 C -0.094 4.094 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.063 4.063 20 Cl -0.054 7.054 21 C -0.136 4.136 22 C -0.109 4.109 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.748 -14.463 7.083 16.199 hybrid contribution 0.068 0.465 -0.687 0.833 sum -1.679 -13.998 6.396 15.481 Atomic orbital electron populations 1.23002 0.76033 1.02335 1.02367 1.86185 1.22996 1.32649 1.87930 1.18181 0.83835 0.81490 0.77170 1.90966 1.64090 1.34717 1.55787 1.47280 1.00918 1.08913 1.73860 1.19394 0.92183 0.76384 0.97790 1.21483 1.38847 1.04389 0.92211 0.92165 1.24917 0.95394 0.96087 0.97533 1.69941 1.40407 1.12150 1.30701 0.86424 0.77716 0.78744 0.84433 1.19748 1.20867 1.20896 1.20382 0.97956 0.87460 0.91246 1.20597 0.94474 0.96326 0.98029 1.21202 0.97347 0.98204 0.93688 1.21043 0.99433 0.97703 0.95057 1.20920 0.97930 1.01290 0.86172 1.98349 1.95694 1.90954 1.20442 1.20990 0.96376 1.01185 0.95084 1.21130 0.99023 0.97026 0.93704 0.92310 0.88861 0.92447 0.93604 0.94198 0.92652 0.89768 0.88634 0.84453 0.85078 0.85335 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -6.47 8.71 -40.31 -0.35 -6.82 16 3 C 0.64 13.80 8.39 54.05 0.45 14.25 16 4 O -0.57 -14.44 15.71 -19.28 -0.30 -14.74 16 5 N -0.57 -12.06 2.44 -182.24 -0.44 -12.50 16 6 C 0.26 6.57 5.17 -5.19 -0.03 6.55 16 7 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 11 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.15 2.50 5.54 -5.19 -0.03 2.47 16 16 C -0.09 -1.37 5.46 -104.62 -0.57 -1.94 16 17 C -0.09 -1.23 9.70 -39.59 -0.38 -1.61 16 18 C -0.11 -1.50 9.83 -39.55 -0.39 -1.89 16 19 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 20 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 21 C -0.12 -1.46 9.83 -39.55 -0.39 -1.85 16 22 C -0.09 -1.20 9.70 -39.59 -0.38 -1.58 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.32 7.41 -51.93 -0.38 0.94 16 27 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.08 1.22 7.32 -51.93 -0.38 0.84 16 30 H 0.10 1.52 8.01 -51.93 -0.42 1.11 16 31 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.65 7.37 -52.49 -0.39 1.26 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -31.75 318.20 -7.48 -39.23 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.07 Total: -1.02 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.32 Total: 2.26 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.29 Total: -37.55 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.65 Total: -21.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.75 -7.48 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193895199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.924 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds