Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 117.00454 * 2 1 4 4 O 1.21514 * 119.99794 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00021 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46877 * 269.72057 * 6 5 3 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99848 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46938 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47198 * 120.00527 * 11 9 7 14 14 H 1.48498 * 109.47360 * 240.00281 * 11 9 7 15 15 C 1.46499 * 120.00036 * 359.72179 * 5 3 2 16 16 C 1.50703 * 109.47126 * 270.27831 * 15 5 3 17 17 C 1.38245 * 119.98472 * 269.72505 * 16 15 5 18 18 C 1.38212 * 120.01135 * 179.72337 * 17 16 15 19 19 C 1.38352 * 119.98586 * 0.55387 * 18 17 16 20 20 Cl 1.73602 * 120.01400 * 179.70095 * 19 18 17 21 21 C 1.38348 * 119.97511 * 359.72260 * 19 18 17 22 22 C 1.38223 * 119.98610 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47205 * 59.99362 * 1 2 3 24 24 H 1.08997 * 109.47628 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46751 * 299.99989 * 1 2 3 26 26 H 1.09000 * 109.46803 * 29.71536 * 6 5 3 27 27 H 1.09000 * 109.47214 * 149.72329 * 6 5 3 28 28 H 0.96998 * 119.99944 * 179.97438 * 10 9 7 29 29 H 1.08994 * 109.47173 * 30.28203 * 15 5 3 30 30 H 1.09005 * 109.47077 * 150.28374 * 15 5 3 31 31 H 1.08002 * 119.99771 * 0.02562 * 17 16 15 32 32 H 1.08004 * 120.01036 * 180.27398 * 18 17 16 33 33 H 1.08000 * 120.01221 * 179.97438 * 21 19 18 34 34 H 1.07996 * 119.99041 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.0744 2.5753 0.0000 7 6 4.3080 3.0206 -1.4206 8 1 3.9922 2.3941 -2.2417 9 6 4.9240 4.2282 -1.6721 10 7 5.3082 4.9912 -0.6721 11 14 5.2143 4.7799 -3.4330 12 1 4.6939 3.7490 -4.3668 13 1 4.5091 6.0647 -3.6718 14 1 6.6701 4.9646 -3.6603 15 6 4.2070 0.0413 0.0051 16 6 4.4750 -0.3772 1.4278 17 6 5.6051 0.0785 2.0808 18 6 5.8484 -0.3003 3.3875 19 6 4.9668 -1.1449 4.0382 20 17 5.2758 -1.6275 5.6770 21 6 3.8390 -1.6052 3.3823 22 6 3.5934 -1.2207 2.0776 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.4443 3.3039 0.5102 27 1 5.0303 2.4958 0.5177 28 1 5.7419 5.8406 -0.8490 29 1 3.6605 -0.7491 -0.5094 30 1 5.1534 0.2203 -0.5053 31 1 6.2954 0.7346 1.5715 32 1 6.7290 0.0593 3.8991 33 1 3.1505 -2.2649 3.8896 34 1 2.7133 -1.5803 1.5654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193895199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -81.064202 kcal Electronic energy + Delta-G solvation = -19888.924959 eV Core-core repulsion = 16619.066855 eV Total energy + Delta-G solvation = -3269.858104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.47807 -40.23537 -37.93579 -37.42140 -36.56725 -34.80123 -32.31915 -32.01517 -29.83212 -28.20285 -26.88484 -24.99364 -23.71727 -22.67804 -21.32099 -19.00831 -18.78037 -18.01748 -17.86874 -17.29946 -16.60913 -16.39817 -16.25274 -15.43039 -14.99761 -14.83877 -14.44068 -14.37415 -14.31509 -14.03147 -13.39587 -13.22079 -12.94051 -12.84694 -12.71397 -12.55786 -12.37863 -12.30104 -12.15287 -11.76996 -11.70685 -11.64668 -11.39723 -10.63197 -9.97487 -9.71706 -9.54187 -8.21997 -6.36039 0.09318 0.35998 1.14011 1.39005 1.40551 1.44446 1.54818 1.91223 2.40236 2.62931 3.08930 3.30142 3.81462 3.86177 3.98674 4.19245 4.40368 4.42299 4.46989 4.57964 4.70250 4.70591 4.81018 4.93482 5.02697 5.14262 5.25087 5.27062 5.39409 5.46978 5.63834 5.78692 5.84676 6.03732 6.57027 6.72367 7.29400 7.47797 8.85634 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.004994 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.731495 B = 5605.372519 C = 6819.958928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.367 6.367 3 C 0.639 3.361 4 O -0.616 6.616 5 N -0.575 5.575 6 C 0.278 3.722 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.013 3.987 10 N -0.926 5.926 11 Si 0.966 3.034 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.154 3.846 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.118 4.118 19 C -0.041 4.041 20 Cl -0.070 7.070 21 C -0.115 4.115 22 C -0.089 4.089 23 H 0.050 0.950 24 H 0.145 0.855 25 H 0.054 0.946 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.268 0.732 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -16.804 6.726 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.281 6.281 3 C 0.393 3.607 4 O -0.508 6.508 5 N -0.312 5.312 6 C 0.158 3.842 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.186 4.186 10 N -0.565 5.565 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.032 3.968 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.137 4.137 19 C -0.068 4.068 20 Cl -0.041 7.041 21 C -0.133 4.133 22 C -0.108 4.108 23 H 0.069 0.931 24 H 0.163 0.837 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.957 -16.411 6.901 17.910 hybrid contribution 0.082 0.961 -0.529 1.100 sum -1.875 -15.450 6.372 16.817 Atomic orbital electron populations 1.23444 0.73616 1.05543 1.01922 1.86198 1.25136 1.29520 1.87212 1.18308 0.83834 0.82121 0.76418 1.90927 1.65240 1.36742 1.57921 1.47154 1.01441 1.09109 1.73540 1.18851 0.91255 0.77674 0.96371 1.21730 1.38923 1.04807 0.92907 0.92622 1.25776 0.94998 0.96081 1.01757 1.70048 1.40988 1.12598 1.32874 0.85387 0.78197 0.78021 0.79317 1.19130 1.20934 1.19426 1.20567 0.97524 0.85856 0.92876 1.20484 0.95406 0.97671 0.97340 1.21240 0.97522 0.98574 0.94411 1.21196 1.00104 0.97709 0.94658 1.21079 0.97944 1.00930 0.86827 1.98355 1.95648 1.90756 1.19384 1.21263 0.96420 1.00914 0.94718 1.21277 0.98948 0.96455 0.94100 0.93080 0.83674 0.92746 0.98118 0.94356 0.92329 0.87595 0.88754 0.85126 0.83773 0.82887 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.18 10.56 113.37 1.20 2.38 16 2 O -0.37 -11.83 8.71 -55.44 -0.48 -12.31 16 3 C 0.64 27.72 8.39 129.79 1.09 28.81 16 4 O -0.62 -32.28 15.71 19.80 0.31 -31.97 16 5 N -0.58 -24.61 2.44 -960.90 -2.34 -26.95 16 6 C 0.28 14.59 5.17 85.63 0.44 15.03 16 7 C -0.55 -30.54 9.39 25.60 0.24 -30.30 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.01 0.75 5.46 84.65 0.46 1.21 16 10 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 11 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 15 C 0.15 4.94 5.54 85.63 0.47 5.41 16 16 C -0.11 -3.10 5.46 -19.86 -0.11 -3.21 16 17 C -0.10 -2.82 9.70 22.27 0.22 -2.60 16 18 C -0.12 -3.00 9.83 22.29 0.22 -2.79 16 19 C -0.04 -0.98 6.32 22.32 0.14 -0.84 16 20 Cl -0.07 -1.50 28.96 -2.72 -0.08 -1.58 16 21 C -0.11 -2.57 9.83 22.29 0.22 -2.36 16 22 C -0.09 -2.20 9.70 22.27 0.22 -1.98 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.00 0.04 7.41 -2.39 -0.02 0.02 16 27 H 0.04 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.11 2.90 7.32 -2.39 -0.02 2.88 16 30 H 0.09 3.01 8.01 -2.38 -0.02 2.99 16 31 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.15 3.19 7.37 -2.91 -0.02 3.17 16 Total: -1.00 -69.66 318.20 5.63 -64.03 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.10 Total: 8.26 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.81 Total: 8.76 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.06 Total: -81.10 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.17 Total: -44.28 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -69.66 5.63 -64.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193895199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.031 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds