Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46838 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47221 * 300.00315 * 3 2 1 6 6 H 1.48501 * 109.47040 * 60.00264 * 3 2 1 7 7 C 1.39979 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99709 * 163.03725 * 7 2 1 9 9 C 1.40939 * 119.99925 * 343.04419 * 7 2 1 10 10 C 1.41372 * 120.53959 * 335.61886 * 9 7 2 11 11 C 1.36471 * 118.43265 * 180.02562 * 10 9 7 12 12 C 1.40125 * 119.46155 * 0.02562 * 11 10 9 13 13 C 1.47493 * 119.47050 * 179.97438 * 12 11 10 14 14 C 1.39144 * 120.27023 * 359.70771 * 13 12 11 15 15 C 1.38384 * 120.38141 * 179.67424 * 14 13 12 16 16 C 1.38163 * 120.75761 * 0.62502 * 15 14 13 17 17 F 1.35107 * 119.92250 * 179.65290 * 16 15 14 18 18 C 1.39510 * 120.15577 * 359.67583 * 16 15 14 19 19 N 1.37231 * 133.63265 * 179.97438 * 18 16 15 20 20 H 0.96995 * 125.99054 * 359.97438 * 19 18 16 21 21 N 1.40032 * 108.02013 * 180.02562 * 19 18 16 22 22 C 1.30314 * 109.66440 * 359.97438 * 21 19 18 23 23 C 1.40545 * 119.77847 * 0.02562 * 18 16 15 24 24 N 1.33193 * 121.06317 * 359.97438 * 12 11 10 25 25 C 1.31197 * 121.70202 * 0.02562 * 24 12 11 26 26 H 0.96997 * 119.99820 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.78445 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.27005 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.81094 * 359.97438 * 14 13 12 30 30 H 1.08001 * 119.61918 * 180.29961 * 15 14 13 31 31 H 1.07998 * 125.64707 * 180.02562 * 22 21 19 32 32 H 1.07997 * 119.78830 * 179.72210 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0081 -1.2123 -0.0005 8 1 3.0529 -1.2325 -0.2734 9 6 1.3494 -2.4064 0.3549 10 6 0.2010 -2.3755 1.1788 11 6 -0.4027 -3.5574 1.4967 12 6 0.1275 -4.7568 1.0029 13 6 -0.5244 -6.0344 1.3468 14 6 -1.6534 -6.0491 2.1601 15 6 -2.2709 -7.2458 2.4787 16 6 -1.7726 -8.4453 2.0078 17 9 -2.3847 -9.6044 2.3351 18 6 -0.6385 -8.4626 1.1954 19 7 0.0768 -9.4644 0.5889 20 1 -0.1174 -10.4135 0.6379 21 7 1.1368 -8.8766 -0.1122 22 6 1.0981 -7.5827 0.0383 23 6 -0.0034 -7.2551 0.8577 24 7 1.2108 -4.7618 0.2280 25 6 1.8256 -3.6516 -0.1047 26 1 -0.4850 0.8400 0.0004 27 1 -0.1894 -1.4386 1.5480 28 1 -1.2815 -3.5683 2.1244 29 1 -2.0529 -5.1208 2.5409 30 1 -3.1493 -7.2425 3.1069 31 1 1.7940 -6.8779 -0.3922 32 1 2.7044 -3.6919 -0.7312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205313463.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = 61.561658 kcal Electronic energy + Delta-G solvation = -20487.546224 eV Core-core repulsion = 17135.138138 eV Total energy + Delta-G solvation = -3352.408087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.53027 -40.96615 -38.57992 -36.52272 -34.44903 -32.15197 -30.96870 -30.59831 -29.48496 -28.41767 -25.56173 -23.12441 -22.65105 -21.60532 -21.04340 -20.65891 -17.89312 -17.70424 -16.98394 -15.91653 -15.78168 -15.51114 -15.15537 -14.59825 -14.52827 -14.09300 -13.93774 -13.49966 -13.20545 -12.75162 -12.66558 -12.30802 -11.85530 -11.66272 -11.50476 -11.29077 -11.14361 -11.07763 -10.75124 -10.57636 -10.05438 -9.92770 -9.60824 -8.53729 -8.47931 -8.27008 -8.08353 -7.27253 -7.06525 -4.71341 0.92539 1.66039 2.48724 2.82481 2.86492 2.87962 2.91337 2.96958 3.00418 3.61281 3.99497 4.46488 4.53868 4.93771 5.04697 5.15978 5.42909 5.47623 5.47926 5.81008 6.00308 6.12122 6.25416 6.39832 6.50101 6.55504 6.65304 6.70635 6.85919 6.95669 7.05333 7.13995 7.51372 7.52222 7.60834 7.71913 7.91783 8.14872 8.32250 8.43601 9.36896 9.68757 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.003941 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.707502 B = 7103.918382 C = 7828.343133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.420 4.420 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.148 4.148 11 C -0.109 4.109 12 C -0.025 4.025 13 C 0.106 3.894 14 C -0.172 4.172 15 C -0.080 4.080 16 C 0.017 3.983 17 F -0.153 7.153 18 C 0.107 3.893 19 N -0.513 5.513 20 H 0.437 0.563 21 N -0.278 5.278 22 C 0.112 3.888 23 C -0.153 4.153 24 N -0.441 5.441 25 C -0.012 4.012 26 H 0.290 0.710 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.208 0.792 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -5.125 2.984 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.152 4.152 3 Si 0.741 3.259 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.066 3.934 10 C -0.172 4.172 11 C -0.129 4.129 12 C -0.156 4.156 13 C 0.102 3.898 14 C -0.193 4.193 15 C -0.101 4.101 16 C -0.007 4.007 17 F -0.132 7.132 18 C -0.012 4.012 19 N -0.227 5.227 20 H 0.281 0.719 21 N -0.093 5.093 22 C -0.082 4.082 23 C -0.162 4.162 24 N -0.148 5.148 25 C -0.179 4.179 26 H 0.101 0.899 27 H 0.145 0.855 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.225 0.775 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.511 -6.820 2.133 7.304 hybrid contribution -0.820 1.580 0.742 1.929 sum -2.331 -5.239 2.875 6.415 Atomic orbital electron populations 1.69795 1.07967 1.30427 1.30697 1.26157 0.94914 1.02253 0.91917 0.86079 0.81058 0.79745 0.79040 1.17860 1.19491 1.19260 1.19818 0.98240 0.90872 1.35835 0.89097 1.18671 0.91965 0.93751 0.89015 1.21308 0.98752 0.97074 1.00093 1.21317 0.98982 0.93138 0.99491 1.18599 0.98494 0.90318 1.08236 1.18313 0.91009 0.90243 0.90205 1.20729 0.97751 0.97432 1.03374 1.20727 0.99810 0.90280 0.99274 1.16452 0.95341 0.82234 1.06662 1.91405 1.82548 1.47309 1.91926 1.18755 0.94452 0.90470 0.97478 1.45987 1.24085 1.07775 1.44870 0.71936 1.76799 1.06526 1.09997 1.15934 1.24358 0.96906 0.91650 0.95329 1.18652 0.99599 0.91695 1.06211 1.66879 1.06473 1.31788 1.09676 1.22510 1.02587 0.87758 1.05065 0.89925 0.85469 0.87706 0.84709 0.84743 0.77530 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.17 10.92 55.55 0.61 -16.57 16 2 C 0.07 1.50 5.18 -17.33 -0.09 1.41 16 3 Si 0.92 16.02 29.59 -169.99 -5.03 10.99 16 4 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 6 H -0.27 -4.64 7.11 56.52 0.40 -4.23 16 7 C -0.42 -9.55 9.06 -37.91 -0.34 -9.89 16 8 H 0.09 1.94 7.90 -52.49 -0.41 1.53 16 9 C 0.07 1.67 5.59 -106.63 -0.60 1.08 16 10 C -0.15 -3.40 8.73 -39.03 -0.34 -3.74 16 11 C -0.11 -2.31 9.38 -39.51 -0.37 -2.68 16 12 C -0.02 -0.53 6.74 -82.80 -0.56 -1.09 16 13 C 0.11 2.05 5.91 -104.57 -0.62 1.43 16 14 C -0.17 -2.82 9.40 -39.19 -0.37 -3.19 16 15 C -0.08 -1.18 9.97 -39.56 -0.39 -1.57 16 16 C 0.02 0.27 7.32 -39.14 -0.29 -0.02 16 17 F -0.15 -2.34 17.27 2.25 0.04 -2.30 16 18 C 0.11 1.86 7.30 -84.11 -0.61 1.25 16 19 N -0.51 -8.24 7.45 32.38 0.24 -8.00 16 20 H 0.44 5.57 8.96 -182.65 -1.64 3.93 16 21 N -0.28 -4.90 12.58 30.81 0.39 -4.52 16 22 C 0.11 2.08 11.16 -17.09 -0.19 1.89 16 23 C -0.15 -2.92 5.99 -106.70 -0.64 -3.56 16 24 N -0.44 -9.69 7.74 -9.15 -0.07 -9.76 16 25 C -0.01 -0.26 10.97 -16.77 -0.18 -0.44 16 26 H 0.29 5.81 8.30 -40.82 -0.34 5.47 16 27 H 0.13 2.96 6.21 -52.49 -0.33 2.64 16 28 H 0.10 1.91 6.15 -52.49 -0.32 1.59 16 29 H 0.14 1.97 6.13 -52.48 -0.32 1.65 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.21 3.74 6.64 -52.49 -0.35 3.40 16 32 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -25.46 285.97 -8.46 -33.92 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.35 Total: 11.04 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -5.59 Total: -19.13 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.16 Total: -38.84 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.46 -8.46 -33.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205313463.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.486 kcal (2) G-P(sol) polarization free energy of solvation -25.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds