Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 119.99873 * 2 1 4 4 H 1.48493 * 109.47282 * 270.00348 * 3 2 1 5 5 H 1.48498 * 109.46842 * 30.00797 * 3 2 1 6 6 H 1.48505 * 109.46794 * 150.00349 * 3 2 1 7 7 C 1.39929 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 163.62987 * 7 2 1 9 9 C 1.41441 * 119.99846 * 343.63350 * 7 2 1 10 10 C 1.40832 * 120.59660 * 155.74057 * 9 7 2 11 11 N 1.31508 * 120.68554 * 179.97438 * 10 9 7 12 12 C 1.31915 * 122.13659 * 359.71572 * 11 10 9 13 13 C 1.39793 * 121.13420 * 0.55279 * 12 11 10 14 14 C 1.48165 * 120.42038 * 179.74113 * 13 12 11 15 15 C 1.38642 * 120.23867 * 129.72294 * 14 13 12 16 16 C 1.38641 * 120.42273 * 180.27775 * 15 14 13 17 17 C 1.37932 * 120.71459 * 359.48069 * 16 15 14 18 18 F 1.35097 * 119.96044 * 180.26170 * 17 16 15 19 19 C 1.39462 * 120.08355 * 0.51605 * 17 16 15 20 20 N 1.37244 * 133.66067 * 179.74467 * 19 17 16 21 21 H 0.96997 * 125.97376 * 359.96176 * 20 19 17 22 22 N 1.40027 * 108.04102 * 180.02562 * 20 19 17 23 23 C 1.30202 * 109.71016 * 359.97438 * 22 20 19 24 24 C 1.40592 * 119.75876 * 359.74701 * 19 17 16 25 25 C 1.39291 * 119.15579 * 359.47084 * 13 12 11 26 26 H 0.97005 * 120.00236 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.65496 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.43088 * 180.27295 * 12 11 10 29 29 H 1.08007 * 119.78863 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.63901 * 179.74505 * 16 15 14 31 31 H 1.08004 * 125.65232 * 180.02562 * 23 22 20 32 32 H 1.07997 * 120.95697 * 180.27611 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0551 -1.2307 -0.2642 9 6 1.3437 -2.4121 0.3441 10 6 1.8233 -3.6540 -0.1151 11 7 1.2073 -4.7711 0.2046 12 6 0.1291 -4.7852 0.9645 13 6 -0.4209 -3.5997 1.4608 14 6 -1.6358 -3.6334 2.3083 15 6 -1.6621 -2.9569 3.5182 16 6 -2.7948 -2.9907 4.3169 17 6 -3.9170 -3.6870 3.9189 18 9 -5.0143 -3.7053 4.7066 19 6 -3.9184 -4.3765 2.7066 20 7 -4.8508 -5.1435 2.0540 21 1 -5.7455 -5.3445 2.3701 22 7 -4.2839 -5.5863 0.8526 23 6 -3.0689 -5.1305 0.7461 24 6 -2.7742 -4.3547 1.8900 25 6 0.1911 -2.3868 1.1532 26 1 -0.4851 0.8401 0.0004 27 1 2.7060 -3.6894 -0.7363 28 1 -0.3394 -5.7284 1.2036 29 1 -0.7932 -2.4034 3.8425 30 1 -2.8001 -2.4625 5.2588 31 1 -2.3976 -5.3147 -0.0797 32 1 -0.2065 -1.4539 1.5248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205341645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = 59.979173 kcal Electronic energy + Delta-G solvation = -20766.564256 eV Core-core repulsion = 17414.087548 eV Total energy + Delta-G solvation = -3352.476708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.75019 -41.24344 -38.50462 -36.74231 -34.19658 -32.74719 -30.94067 -30.41593 -29.63896 -27.83871 -25.71761 -23.32776 -22.79507 -21.56916 -21.51218 -20.56685 -18.21207 -17.46674 -16.81932 -15.98133 -15.74376 -15.66766 -15.19907 -15.02676 -14.66427 -14.34457 -14.15011 -13.76828 -13.20535 -12.96018 -12.39092 -12.09015 -11.67046 -11.61114 -11.53250 -11.42655 -11.30344 -11.08578 -10.84545 -10.66276 -10.15857 -9.96412 -9.48166 -8.70090 -8.35224 -8.25547 -7.86900 -7.32669 -6.95230 -4.60410 0.82522 1.50912 2.46822 2.61771 2.71633 2.79796 2.97361 3.00491 3.10572 3.77928 3.86439 4.29602 4.46323 4.71688 4.83009 5.01607 5.18589 5.30966 5.51269 5.76771 5.82424 5.91521 6.13500 6.29738 6.41562 6.49635 6.56111 6.64308 6.89893 6.92163 6.99706 7.08720 7.29071 7.52407 7.63866 7.73152 7.78577 8.28832 8.55597 8.57709 9.49710 9.95672 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.005179 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.195589 B = 5404.682944 C = 6195.940329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.062 3.938 10 C -0.013 4.013 11 N -0.468 5.468 12 C -0.020 4.020 13 C -0.102 4.102 14 C 0.074 3.926 15 C -0.137 4.137 16 C -0.088 4.088 17 C 0.045 3.955 18 F -0.148 7.148 19 C 0.101 3.899 20 N -0.507 5.507 21 H 0.440 0.560 22 N -0.257 5.257 23 C 0.095 3.905 24 C -0.145 4.145 25 C -0.108 4.108 26 H 0.285 0.715 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.198 0.802 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -1.923 6.044 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.057 3.943 10 C -0.175 4.175 11 N -0.175 5.175 12 C -0.177 4.177 13 C -0.104 4.104 14 C 0.070 3.930 15 C -0.157 4.157 16 C -0.110 4.110 17 C 0.021 3.979 18 F -0.127 7.127 19 C -0.017 4.017 20 N -0.222 5.222 21 H 0.285 0.715 22 N -0.071 5.071 23 C -0.101 4.101 24 C -0.153 4.153 25 C -0.133 4.133 26 H 0.096 0.904 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.215 0.785 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.664 -3.286 5.167 9.050 hybrid contribution -0.214 2.074 0.966 2.298 sum -6.878 -1.212 6.132 9.294 Atomic orbital electron populations 1.69772 1.07655 1.29835 1.33952 1.25975 0.94806 1.01658 0.92039 0.86241 0.80614 0.80128 0.79471 1.19284 1.19955 1.18243 1.19564 0.97819 0.90616 1.39704 0.89735 1.18461 0.92074 0.93774 0.89972 1.22581 1.02301 0.88057 1.04516 1.66957 1.07775 1.31586 1.11132 1.21761 0.97056 0.95140 1.03781 1.19381 0.94779 0.95828 1.00455 1.18543 0.91176 0.90792 0.92464 1.20887 0.98410 1.02233 0.94151 1.20880 0.91318 0.98125 1.00661 1.16479 0.85775 1.06439 0.89165 1.91436 1.52062 1.95748 1.73418 1.18704 0.91812 0.96936 0.94242 1.45993 1.14789 1.44987 1.16446 0.71534 1.76727 1.10316 1.19915 1.00179 1.24035 0.93061 0.94853 0.98130 1.18720 0.94248 1.05982 0.96377 1.21819 0.97242 0.95718 0.98564 0.90406 0.85490 0.86095 0.84362 0.84243 0.78504 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.68 10.90 55.55 0.61 -18.08 16 2 C 0.07 1.70 5.20 -17.34 -0.09 1.61 16 3 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.45 -10.76 9.09 -37.73 -0.34 -11.10 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.06 1.50 5.59 -106.71 -0.60 0.91 16 10 C -0.01 -0.31 10.96 -16.71 -0.18 -0.50 16 11 N -0.47 -10.75 10.32 -12.25 -0.13 -10.87 16 12 C -0.02 -0.41 9.91 -16.93 -0.17 -0.58 16 13 C -0.10 -2.15 5.41 -104.85 -0.57 -2.72 16 14 C 0.07 1.36 5.51 -104.58 -0.58 0.78 16 15 C -0.14 -2.21 9.50 -39.28 -0.37 -2.58 16 16 C -0.09 -1.25 9.98 -39.54 -0.39 -1.64 16 17 C 0.04 0.67 7.31 -39.24 -0.29 0.38 16 18 F -0.15 -2.10 17.27 2.25 0.04 -2.06 16 19 C 0.10 1.62 7.30 -84.10 -0.61 1.00 16 20 N -0.51 -7.38 7.45 32.39 0.24 -7.14 16 21 H 0.44 4.99 8.96 -182.65 -1.64 3.35 16 22 N -0.26 -4.11 12.57 30.83 0.39 -3.72 16 23 C 0.09 1.57 11.20 -17.07 -0.19 1.38 16 24 C -0.15 -2.54 5.89 -106.74 -0.63 -3.16 16 25 C -0.11 -2.52 8.28 -38.20 -0.32 -2.83 16 26 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 27 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 28 H 0.12 2.32 7.83 -52.49 -0.41 1.91 16 29 H 0.14 2.10 8.04 -52.48 -0.42 1.68 16 30 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.20 3.04 7.68 -52.48 -0.40 2.64 16 32 H 0.13 3.16 6.20 -52.49 -0.33 2.84 16 LS Contribution 291.56 15.07 4.39 4.39 Total: -1.00 -26.50 291.56 -8.41 -34.91 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -3.59 Total: 9.53 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -5.33 Total: -19.05 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 1.11 Total: -39.81 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.50 -8.41 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205341645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.891 kcal (2) G-P(sol) polarization free energy of solvation -26.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds