Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 119.99873 * 2 1 4 4 H 1.48493 * 109.47282 * 270.00348 * 3 2 1 5 5 H 1.48498 * 109.46842 * 30.00797 * 3 2 1 6 6 H 1.48505 * 109.46794 * 150.00349 * 3 2 1 7 7 C 1.39929 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 163.62987 * 7 2 1 9 9 C 1.41441 * 119.99846 * 343.63350 * 7 2 1 10 10 C 1.40832 * 120.59660 * 155.74057 * 9 7 2 11 11 N 1.31508 * 120.68554 * 179.97438 * 10 9 7 12 12 C 1.31915 * 122.13659 * 359.71572 * 11 10 9 13 13 C 1.39793 * 121.13420 * 0.55279 * 12 11 10 14 14 C 1.48165 * 120.42038 * 179.74113 * 13 12 11 15 15 C 1.38642 * 120.23867 * 129.72294 * 14 13 12 16 16 C 1.38641 * 120.42273 * 180.27775 * 15 14 13 17 17 C 1.37932 * 120.71459 * 359.48069 * 16 15 14 18 18 F 1.35097 * 119.96044 * 180.26170 * 17 16 15 19 19 C 1.39462 * 120.08355 * 0.51605 * 17 16 15 20 20 N 1.37244 * 133.66067 * 179.74467 * 19 17 16 21 21 H 0.96997 * 125.97376 * 359.96176 * 20 19 17 22 22 N 1.40027 * 108.04102 * 180.02562 * 20 19 17 23 23 C 1.30202 * 109.71016 * 359.97438 * 22 20 19 24 24 C 1.40592 * 119.75876 * 359.74701 * 19 17 16 25 25 C 1.39291 * 119.15579 * 359.47084 * 13 12 11 26 26 H 0.97005 * 120.00236 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.65496 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.43088 * 180.27295 * 12 11 10 29 29 H 1.08007 * 119.78863 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.63901 * 179.74505 * 16 15 14 31 31 H 1.08004 * 125.65232 * 180.02562 * 23 22 20 32 32 H 1.07997 * 120.95697 * 180.27611 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0551 -1.2307 -0.2642 9 6 1.3437 -2.4121 0.3441 10 6 1.8233 -3.6540 -0.1151 11 7 1.2073 -4.7711 0.2046 12 6 0.1291 -4.7852 0.9645 13 6 -0.4209 -3.5997 1.4608 14 6 -1.6358 -3.6334 2.3083 15 6 -1.6621 -2.9569 3.5182 16 6 -2.7948 -2.9907 4.3169 17 6 -3.9170 -3.6870 3.9189 18 9 -5.0143 -3.7053 4.7066 19 6 -3.9184 -4.3765 2.7066 20 7 -4.8508 -5.1435 2.0540 21 1 -5.7455 -5.3445 2.3701 22 7 -4.2839 -5.5863 0.8526 23 6 -3.0689 -5.1305 0.7461 24 6 -2.7742 -4.3547 1.8900 25 6 0.1911 -2.3868 1.1532 26 1 -0.4851 0.8401 0.0004 27 1 2.7060 -3.6894 -0.7363 28 1 -0.3394 -5.7284 1.2036 29 1 -0.7932 -2.4034 3.8425 30 1 -2.8001 -2.4625 5.2588 31 1 -2.3976 -5.3147 -0.0797 32 1 -0.2065 -1.4539 1.5248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205341645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = 46.114927 kcal Electronic energy + Delta-G solvation = -20767.165455 eV Core-core repulsion = 17414.087548 eV Total energy + Delta-G solvation = -3353.077907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.92198 -42.50549 -40.19212 -38.05749 -35.93745 -34.14540 -32.44319 -32.05248 -30.92754 -29.26430 -27.48555 -24.72173 -24.19834 -23.15280 -22.89730 -22.02865 -19.61644 -18.92276 -18.21305 -17.52962 -17.17823 -16.92634 -16.75905 -16.35469 -16.23385 -15.70268 -15.48083 -15.01842 -14.70828 -14.32604 -14.03259 -13.68416 -13.28361 -13.23177 -13.03318 -12.76471 -12.72391 -12.61208 -12.18446 -12.10439 -11.67924 -11.38220 -11.17716 -10.15979 -10.03934 -9.77383 -9.57379 -8.72700 -8.66207 -6.42252 -0.47443 0.23270 0.81802 1.06341 1.35414 1.43725 1.52574 1.57753 1.58911 2.21467 2.53915 2.75634 3.07140 3.45149 3.57260 3.69443 3.81114 3.95227 4.00529 4.21899 4.51388 4.60199 4.66787 4.84165 4.87973 5.02130 5.05854 5.18101 5.22362 5.35092 5.47516 5.68384 5.81151 5.94781 6.03241 6.16314 6.42769 6.50717 6.78208 6.79645 7.71777 8.26363 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.005179 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.195589 B = 5404.682944 C = 6195.940329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.478 4.478 8 H 0.086 0.914 9 C 0.039 3.961 10 C -0.033 4.033 11 N -0.478 5.478 12 C -0.021 4.021 13 C -0.088 4.088 14 C 0.044 3.956 15 C -0.132 4.132 16 C -0.078 4.078 17 C 0.054 3.946 18 F -0.139 7.139 19 C 0.093 3.907 20 N -0.495 5.495 21 H 0.454 0.546 22 N -0.259 5.259 23 C 0.082 3.918 24 C -0.158 4.158 25 C -0.125 4.125 26 H 0.292 0.708 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.201 0.799 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 -1.315 7.434 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.507 4.507 8 H 0.104 0.896 9 C 0.034 3.966 10 C -0.194 4.194 11 N -0.185 5.185 12 C -0.179 4.179 13 C -0.090 4.090 14 C 0.041 3.959 15 C -0.152 4.152 16 C -0.099 4.099 17 C 0.031 3.969 18 F -0.118 7.118 19 C -0.025 4.025 20 N -0.212 5.212 21 H 0.302 0.698 22 N -0.074 5.074 23 C -0.113 4.113 24 C -0.166 4.166 25 C -0.151 4.151 26 H 0.102 0.898 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.194 0.806 31 H 0.218 0.782 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.689 -2.702 6.556 10.459 hybrid contribution -0.053 1.788 0.612 1.890 sum -7.742 -0.914 7.168 10.590 Atomic orbital electron populations 1.69822 1.08969 1.31028 1.34338 1.26750 0.95454 1.04503 0.91011 0.85182 0.79230 0.75794 0.79489 1.18927 1.19146 1.17980 1.19824 0.98181 0.91521 1.41168 0.89563 1.18767 0.92856 0.94378 0.90559 1.22725 1.03058 0.88147 1.05429 1.66970 1.08443 1.31473 1.11657 1.22146 0.96483 0.96223 1.03040 1.19524 0.95167 0.94793 0.99565 1.18461 0.90657 0.93338 0.93486 1.21030 0.99375 1.01218 0.93542 1.21168 0.89913 0.97367 1.01454 1.16568 0.86121 1.05557 0.88631 1.91466 1.51677 1.95604 1.73051 1.18822 0.91675 0.97373 0.94630 1.46016 1.15227 1.44185 1.15764 0.69818 1.76685 1.10101 1.19814 1.00762 1.24116 0.93448 0.95333 0.98366 1.18781 0.94548 1.06234 0.97016 1.21793 0.97760 0.96210 0.99367 0.89758 0.84774 0.84032 0.83847 0.80601 0.78229 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.17 10.90 21.82 0.24 -38.93 16 2 C 0.04 1.81 5.20 85.25 0.44 2.25 16 3 Si 0.98 34.86 29.59 68.60 2.03 36.89 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.48 -23.52 9.09 23.47 0.21 -23.30 16 8 H 0.09 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.04 1.94 5.59 -21.22 -0.12 1.82 16 10 C -0.03 -1.60 10.96 85.38 0.94 -0.66 16 11 N -0.48 -22.28 10.32 -192.67 -1.99 -24.27 16 12 C -0.02 -0.89 9.91 85.06 0.84 -0.05 16 13 C -0.09 -3.75 5.41 -20.01 -0.11 -3.85 16 14 C 0.04 1.60 5.51 -19.84 -0.11 1.49 16 15 C -0.13 -4.04 9.50 22.46 0.21 -3.82 16 16 C -0.08 -1.95 9.98 22.29 0.22 -1.73 16 17 C 0.05 1.47 7.31 22.49 0.16 1.64 16 18 F -0.14 -3.47 17.27 44.97 0.78 -2.69 16 19 C 0.09 2.80 7.30 39.17 0.29 3.09 16 20 N -0.49 -13.40 7.45 -51.45 -0.38 -13.79 16 21 H 0.45 9.21 8.96 -213.37 -1.91 7.30 16 22 N -0.26 -7.94 12.57 -56.37 -0.71 -8.65 16 23 C 0.08 2.68 11.20 85.70 0.96 3.64 16 24 C -0.16 -5.34 5.89 -21.24 -0.13 -5.47 16 25 C -0.13 -5.99 8.28 23.16 0.19 -5.80 16 26 H 0.29 12.68 8.30 -92.70 -0.77 11.91 16 27 H 0.13 6.04 8.06 -2.91 -0.02 6.02 16 28 H 0.14 5.35 7.83 -2.91 -0.02 5.33 16 29 H 0.14 4.19 8.04 -2.91 -0.02 4.16 16 30 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.20 6.18 7.68 -2.91 -0.02 6.16 16 32 H 0.12 6.02 6.20 -2.91 -0.02 6.00 16 Total: -1.00 -56.51 291.56 3.26 -53.25 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.72 Total: 28.96 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 4.01 Total: -30.76 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.84 Total: -85.64 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -56.51 3.26 -53.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205341645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.364 kcal (2) G-P(sol) polarization free energy of solvation -56.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds