Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39635 * 119.64969 * 295.52523 * 3 2 1 5 5 C 1.38178 * 119.14681 * 179.97438 * 4 3 2 6 6 C 1.39496 * 118.44298 * 359.97438 * 5 4 3 7 7 N 1.39255 * 120.38503 * 180.02562 * 6 5 4 8 8 C 1.39798 * 119.99661 * 149.69539 * 7 6 5 9 9 C 1.39430 * 119.92074 * 327.05071 * 8 7 6 10 10 C 1.38352 * 120.46480 * 180.27736 * 9 8 7 11 11 C 1.38007 * 120.29312 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.08711 * 179.97438 * 11 10 9 13 13 C 1.41018 * 119.82533 * 0.02562 * 11 10 9 14 14 C 1.41294 * 120.22649 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00006 * 27.12232 * 14 13 11 16 16 C 1.39919 * 119.99862 * 207.10699 * 14 13 11 17 17 N 1.30850 * 119.99965 * 15.40502 * 16 14 13 18 18 Si 1.86796 * 119.99908 * 195.39620 * 16 14 13 19 19 H 1.48504 * 109.46811 * 90.00444 * 18 16 14 20 20 H 1.48501 * 109.47412 * 210.00378 * 18 16 14 21 21 H 1.48506 * 109.47422 * 330.00511 * 18 16 14 22 22 C 1.38190 * 119.91279 * 147.32510 * 8 7 6 23 23 C 1.39339 * 119.22590 * 0.27446 * 6 5 4 24 24 N 1.31416 * 120.78809 * 359.43216 * 23 6 5 25 25 H 1.07999 * 120.43019 * 359.96034 * 4 3 2 26 26 H 1.08001 * 120.77818 * 179.97438 * 5 4 3 27 27 H 0.96999 * 120.00236 * 329.69787 * 7 6 5 28 28 H 1.08001 * 119.76381 * 0.24860 * 9 8 7 29 29 H 1.08003 * 119.84813 * 179.97438 * 10 9 8 30 30 H 0.97001 * 120.00014 * 179.97438 * 17 16 14 31 31 H 1.08001 * 120.14953 * 359.70177 * 22 8 7 32 32 H 1.07999 * 119.60507 * 179.72394 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2590 -0.5220 1.0951 5 6 4.6407 -0.5166 1.0839 6 6 5.2941 0.0137 -0.0286 7 7 6.6853 0.0390 -0.0827 8 6 7.3386 -0.0502 -1.3155 9 6 6.7813 -0.8080 -2.3447 10 6 7.4210 -0.9086 -3.5673 11 6 8.6194 -0.2585 -3.7815 12 9 9.2408 -0.3600 -4.9768 13 6 9.1941 0.5112 -2.7491 14 6 10.4204 1.1808 -2.9594 15 1 10.7061 1.4842 -3.9558 16 6 11.2645 1.4511 -1.8767 17 7 11.0823 0.8369 -0.7358 18 14 12.6516 2.6886 -2.0602 19 1 12.1598 4.0413 -1.6945 20 1 13.7738 2.3109 -1.1639 21 1 13.1241 2.6976 -3.4680 22 6 8.5380 0.6083 -1.5090 23 6 4.5384 0.5227 -1.0829 24 7 3.2251 0.4972 -1.0428 25 1 2.7205 -0.9250 1.9400 26 1 5.2017 -0.9137 1.9170 27 1 7.2012 0.1184 0.7349 28 1 5.8438 -1.3203 -2.1862 29 1 6.9806 -1.4986 -4.3575 30 1 11.6677 1.0240 0.0147 31 1 8.9693 1.1955 -0.7117 32 1 5.0379 0.9389 -1.9452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209678555.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = 40.860374 kcal Electronic energy + Delta-G solvation = -20177.463287 eV Core-core repulsion = 16824.157525 eV Total energy + Delta-G solvation = -3353.305762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.33911 -40.47093 -38.18043 -36.51981 -35.34255 -33.74640 -32.32899 -30.51480 -29.98658 -27.65858 -25.63473 -24.12342 -23.46854 -21.64597 -20.57804 -19.40748 -17.89611 -17.39836 -16.34747 -16.20938 -15.84816 -15.06670 -14.79868 -14.61021 -14.46027 -14.12724 -13.79131 -13.28095 -13.25531 -12.87348 -12.78046 -12.68912 -12.50816 -12.19314 -11.85417 -11.66380 -11.55499 -11.24927 -10.87363 -10.48685 -10.25094 -9.80643 -9.73287 -9.61089 -9.44294 -8.31889 -7.81791 -7.10933 -6.71247 -4.65737 0.69616 1.22538 2.40944 2.54980 2.59153 2.91404 2.95151 2.99207 3.02958 3.47889 3.74979 3.75912 3.96645 4.32173 4.67906 4.82568 4.98933 5.10378 5.21558 5.57849 5.73866 5.78820 5.90522 6.02054 6.20783 6.35802 6.65292 6.66754 6.84751 6.94859 7.28328 7.29230 7.42291 7.54483 7.72009 7.82005 7.93409 8.00082 8.31843 8.51444 8.58894 9.90606 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025347 B = 0.003939 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.387841 B = 7106.464310 C = 7786.475148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.283 3.717 3 C 0.109 3.891 4 C -0.075 4.075 5 C -0.153 4.153 6 C 0.193 3.807 7 N -0.664 5.664 8 C 0.154 3.846 9 C -0.245 4.245 10 C -0.098 4.098 11 C -0.035 4.035 12 F -0.162 7.162 13 C 0.105 3.895 14 C -0.448 4.448 15 H 0.086 0.914 16 C 0.077 3.923 17 N -0.789 5.789 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.169 4.169 23 C 0.067 3.933 24 N -0.418 5.418 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.410 0.590 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.284 0.716 31 H 0.130 0.870 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -0.889 6.010 7.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.033 4.033 3 C -0.029 4.029 4 C -0.098 4.098 5 C -0.182 4.182 6 C 0.085 3.915 7 N -0.284 5.284 8 C 0.061 3.939 9 C -0.267 4.267 10 C -0.118 4.118 11 C -0.056 4.056 12 F -0.141 7.141 13 C 0.101 3.899 14 C -0.477 4.477 15 H 0.104 0.896 16 C -0.142 4.142 17 N -0.414 5.414 18 Si 0.739 3.261 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.191 4.191 23 C -0.100 4.100 24 N -0.127 5.127 25 H 0.158 0.842 26 H 0.161 0.839 27 H 0.247 0.753 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.577 -0.606 5.381 8.519 hybrid contribution 1.979 0.071 0.843 2.152 sum -4.598 -0.535 6.224 7.757 Atomic orbital electron populations 1.81202 1.11762 1.09096 1.07744 1.25063 0.91737 0.93221 0.93260 1.16129 0.85824 1.07186 0.93716 1.21664 0.93990 0.96693 0.97440 1.21173 0.93890 1.02900 1.00257 1.19119 0.85456 0.91713 0.95224 1.42130 1.01645 1.76191 1.08471 1.17562 0.93816 0.98054 0.84516 1.19955 1.03216 1.09220 0.94262 1.20325 0.94331 1.00121 0.97043 1.17881 0.96203 1.07820 0.83688 1.91286 1.83023 1.95519 1.44247 1.17378 0.92689 0.89834 0.89985 1.19566 1.01262 1.31431 0.95448 0.89592 1.25922 0.98970 0.94981 0.94355 1.69782 1.35595 1.33161 1.02825 0.86183 0.79522 0.80616 0.79818 1.19021 1.20098 1.18326 1.20855 0.94717 1.03995 0.99578 1.22800 0.87627 0.99566 1.00000 1.67415 1.09801 1.11977 1.23543 0.84180 0.83895 0.75311 0.88057 0.87552 0.90500 0.85246 0.81040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.33 18.54 41.83 0.78 -5.56 16 2 C 0.28 3.86 15.53 -22.47 -0.35 3.51 16 3 C 0.11 1.41 6.59 -84.96 -0.56 0.85 16 4 C -0.07 -0.75 9.78 -39.08 -0.38 -1.14 16 5 C -0.15 -1.60 10.09 -39.13 -0.39 -1.99 16 6 C 0.19 2.56 5.90 -83.61 -0.49 2.07 16 7 N -0.66 -9.78 5.43 -8.32 -0.05 -9.82 16 8 C 0.15 2.89 5.82 -83.80 -0.49 2.40 16 9 C -0.24 -4.63 8.04 -39.10 -0.31 -4.94 16 10 C -0.10 -2.01 10.00 -39.62 -0.40 -2.40 16 11 C -0.04 -0.82 7.31 -38.61 -0.28 -1.10 16 12 F -0.16 -3.82 16.74 2.25 0.04 -3.78 16 13 C 0.11 2.53 5.55 -106.78 -0.59 1.94 16 14 C -0.45 -10.99 8.76 -37.79 -0.33 -11.32 16 15 H 0.09 2.11 7.76 -52.49 -0.41 1.70 16 16 C 0.08 1.74 5.17 -17.34 -0.09 1.65 16 17 N -0.79 -17.98 10.99 55.55 0.61 -17.37 16 18 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 19 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 20 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 C -0.17 -3.69 8.57 -38.70 -0.33 -4.02 16 23 C 0.07 0.97 9.23 -17.32 -0.16 0.81 16 24 N -0.42 -6.14 10.27 -10.91 -0.11 -6.25 16 25 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.41 5.30 8.92 -40.82 -0.36 4.94 16 28 H 0.10 1.76 6.84 -52.49 -0.36 1.40 16 29 H 0.11 1.94 8.06 -52.48 -0.42 1.51 16 30 H 0.28 5.86 8.30 -40.82 -0.34 5.52 16 31 H 0.13 2.88 6.27 -52.49 -0.33 2.55 16 32 H 0.17 2.64 6.77 -52.49 -0.36 2.29 16 LS Contribution 298.22 15.07 4.49 4.49 Total: -1.00 -25.68 298.22 -6.65 -32.33 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.22 Total: 7.50 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -5.16 Total: -13.68 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 1.23 Total: -39.00 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.68 -6.65 -32.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209678555.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.193 kcal (2) G-P(sol) polarization free energy of solvation -25.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds