Wall clock time and date at job start Tue Mar 31 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99893 * 2 1 4 4 H 1.48507 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47153 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47195 * 60.00445 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99453 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00476 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64854 * 359.97438 * 9 7 2 11 11 C 1.54916 * 104.83212 * 155.90574 * 10 9 7 12 12 C 1.55161 * 101.57722 * 37.01408 * 11 10 9 13 13 H 1.08995 * 110.71753 * 83.04225 * 12 11 10 14 14 O 1.42903 * 110.71349 * 206.13476 * 12 11 10 15 15 C 1.35680 * 116.99699 * 210.00287 * 14 12 11 16 16 N 1.32536 * 120.07141 * 0.02562 * 15 14 12 17 17 C 1.32207 * 119.93651 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.07938 * 359.95293 * 17 16 15 19 19 N 1.32206 * 120.14180 * 0.02562 * 18 17 16 20 20 C 1.32004 * 120.06589 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.03922 * 179.72205 * 20 19 18 22 22 Cl 1.80296 * 109.46871 * 90.00308 * 21 20 19 23 23 C 1.47027 * 125.64783 * 180.02562 * 9 7 2 24 24 H 0.96998 * 120.00293 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.36560 * 37.07511 * 10 9 7 26 26 H 1.08991 * 110.37138 * 274.74982 * 10 9 7 27 27 H 1.08997 * 111.00676 * 278.93611 * 11 10 9 28 28 H 1.09005 * 111.03253 * 155.09830 * 11 10 9 29 29 H 1.07999 * 119.96187 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.92735 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47309 * 210.00300 * 21 20 19 32 32 H 1.08996 * 109.47216 * 330.00255 * 21 20 19 33 33 H 1.08994 * 109.88038 * 61.60662 * 23 9 7 34 34 H 1.09004 * 109.87899 * 300.43604 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4021 -3.9324 -0.6112 12 6 0.7784 -4.7525 -0.0269 13 1 0.5452 -5.1007 0.9793 14 8 1.0998 -5.8535 -0.8793 15 6 1.6095 -6.9627 -0.2869 16 7 1.7886 -6.9916 1.0260 17 6 2.2860 -8.0736 1.6003 18 6 2.6184 -9.1745 0.8333 19 7 2.4406 -9.1492 -0.4765 20 6 1.9454 -8.0715 -1.0560 21 6 1.7489 -8.0410 -2.5499 22 17 0.0988 -8.6466 -2.9514 23 6 1.9318 -3.7275 -0.0005 24 1 -0.4850 0.8400 0.0004 25 1 -0.5997 -1.7589 -0.6148 26 1 -0.5266 -2.4868 1.0191 27 1 -0.3532 -3.8982 -1.6996 28 1 -1.3592 -4.3332 -0.2776 29 1 2.4325 -8.0974 2.6701 30 1 3.0241 -10.0573 1.3051 31 1 1.8580 -7.0180 -2.9099 32 1 2.4951 -8.6758 -3.0275 33 1 2.5287 -3.8642 0.9011 34 1 2.5577 -3.8511 -0.8844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223020916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:40 Heat of formation + Delta-G solvation = 33.223537 kcal Electronic energy + Delta-G solvation = -19866.706024 eV Core-core repulsion = 16634.096560 eV Total energy + Delta-G solvation = -3232.609464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.45863 -38.84988 -36.42210 -36.18607 -34.45258 -32.59216 -31.66413 -29.31565 -27.90214 -27.44589 -24.99058 -23.87103 -23.13550 -20.47902 -20.32128 -18.43516 -17.99367 -16.92633 -16.41374 -16.06017 -15.19137 -14.75121 -14.54440 -14.25450 -13.94015 -13.78362 -13.40574 -13.13906 -12.84920 -12.53052 -12.03591 -11.76383 -11.47176 -11.25812 -11.04034 -10.84203 -10.82635 -10.57341 -10.47998 -10.31899 -10.09290 -9.87456 -9.63601 -9.33739 -8.71674 -8.68579 -6.91508 -5.71311 -3.13688 0.49339 0.98064 2.23937 2.91342 3.37424 3.42877 3.45480 3.57323 3.77531 3.93718 4.24101 4.45054 4.69527 4.87491 5.00280 5.22521 5.26775 5.31595 5.37044 5.44143 5.63877 5.74283 5.88202 6.21785 6.39067 6.46438 6.52251 6.58491 7.06004 7.25368 7.41171 7.56395 7.58965 7.77090 8.28020 9.15228 9.75476 10.38650 11.33136 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.004115 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.391619 B = 6803.163209 C = 7344.105353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.139 4.139 12 C 0.072 3.928 13 H 0.095 0.905 14 O -0.281 6.281 15 C 0.310 3.690 16 N -0.493 5.493 17 C 0.108 3.892 18 C -0.005 4.005 19 N -0.391 5.391 20 C 0.035 3.965 21 C 0.033 3.967 22 Cl -0.166 7.166 23 C 0.127 3.873 24 H 0.253 0.747 25 H 0.114 0.886 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.029 0.971 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -18.080 -0.583 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.177 4.177 12 C 0.016 3.984 13 H 0.113 0.887 14 O -0.184 6.184 15 C 0.127 3.873 16 N -0.222 5.222 17 C -0.052 4.052 18 C -0.165 4.165 19 N -0.106 5.106 20 C -0.109 4.109 21 C -0.031 4.031 22 Cl -0.140 7.140 23 C 0.000 4.000 24 H 0.064 0.936 25 H 0.132 0.868 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.191 0.809 30 H 0.190 0.810 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.047 0.953 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.624 -17.778 -0.915 17.994 hybrid contribution 0.461 0.787 0.501 1.041 sum 3.085 -16.991 -0.414 17.273 Atomic orbital electron populations 1.69764 1.04926 1.24861 1.57548 1.24794 0.95755 0.97763 1.02196 0.85965 0.78641 0.83381 0.77306 1.20503 1.21628 1.21664 1.19124 0.90585 0.82184 1.43254 0.90336 1.44372 1.01888 0.99403 1.87109 1.21989 0.84834 0.91683 0.98577 1.23280 0.94963 0.97914 1.01591 1.23789 0.97405 0.83034 0.94158 0.88687 1.86380 1.74299 1.21217 1.36531 1.20738 0.89511 0.88318 0.88747 1.68227 1.15934 1.28312 1.09756 1.23648 0.91670 0.87986 1.01930 1.23497 1.02760 1.00454 0.89766 1.68134 1.07153 1.23363 1.11988 1.21012 1.03525 0.89557 0.96819 1.22829 0.86015 1.04242 0.89991 1.98733 1.30759 1.90162 1.94329 1.21539 0.93589 0.86217 0.98640 0.93620 0.86800 0.96489 0.90770 0.91511 0.80859 0.80961 0.86343 0.87005 0.95342 0.95163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 9 N -0.60 -15.51 3.39 -170.08 -0.58 -16.09 16 10 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 11 C -0.14 -2.69 6.81 -24.58 -0.17 -2.86 16 12 C 0.07 1.35 3.25 -24.90 -0.08 1.27 16 13 H 0.10 1.76 6.97 -51.93 -0.36 1.40 16 14 O -0.28 -4.72 8.91 -18.74 -0.17 -4.89 16 15 C 0.31 4.67 7.46 -16.94 -0.13 4.55 16 16 N -0.49 -7.14 8.81 -13.13 -0.12 -7.25 16 17 C 0.11 1.12 11.22 -17.39 -0.20 0.93 16 18 C -0.01 -0.05 11.21 -17.39 -0.20 -0.25 16 19 N -0.39 -4.75 10.42 -9.16 -0.10 -4.84 16 20 C 0.03 0.46 6.18 -82.21 -0.51 -0.05 16 21 C 0.03 0.37 6.75 36.01 0.24 0.62 16 22 Cl -0.17 -2.08 29.13 -51.86 -1.51 -3.59 16 23 C 0.13 2.75 7.02 -3.06 -0.02 2.73 16 24 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.11 3.06 5.87 -51.93 -0.31 2.76 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.31 7.54 -51.93 -0.39 0.92 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -31.28 304.57 -7.64 -38.92 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.98 Total: -1.59 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.32 Total: 3.88 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.23 Total: -54.21 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.17 Total: -4.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.51 Total: -3.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.28 -7.64 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223020916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.143 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds