Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00282 * 2 1 4 4 H 1.48500 * 109.46784 * 264.53066 * 3 2 1 5 5 H 1.48500 * 109.47063 * 24.52961 * 3 2 1 6 6 H 1.48497 * 109.47433 * 144.53177 * 3 2 1 7 7 C 1.38817 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00049 * 337.62483 * 7 2 1 9 9 N 1.36940 * 119.99826 * 157.62291 * 7 2 1 10 10 C 1.47428 * 125.64622 * 341.47767 * 9 7 2 11 11 C 1.55131 * 104.93781 * 204.03979 * 10 9 7 12 12 C 1.55154 * 101.48554 * 323.22069 * 11 10 9 13 13 H 1.09003 * 110.71595 * 276.83209 * 12 11 10 14 14 O 1.42899 * 110.71985 * 153.73769 * 12 11 10 15 15 C 1.35462 * 116.99944 * 152.44115 * 14 12 11 16 16 N 1.32324 * 119.19531 * 359.72614 * 15 14 12 17 17 C 1.32295 * 120.75592 * 179.76329 * 16 15 14 18 18 C 1.38586 * 119.17605 * 0.50038 * 17 16 15 19 19 C 1.50707 * 120.73759 * 179.72875 * 18 17 16 20 20 Cl 1.80298 * 109.47180 * 270.02523 * 19 18 17 21 21 C 1.38590 * 118.52563 * 359.75641 * 18 17 16 22 22 N 1.32299 * 119.17083 * 359.97438 * 21 18 17 23 23 C 1.47016 * 125.64837 * 161.51506 * 9 7 2 24 24 H 0.97010 * 119.99915 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.36293 * 322.99520 * 10 9 7 26 26 H 1.08989 * 110.37173 * 85.21802 * 10 9 7 27 27 H 1.09003 * 111.15964 * 205.12636 * 11 10 9 28 28 H 1.09003 * 110.93576 * 81.21385 * 11 10 9 29 29 H 1.08002 * 120.41091 * 180.23575 * 17 16 15 30 30 H 1.09000 * 109.47244 * 30.02910 * 19 18 17 31 31 H 1.09001 * 109.47141 * 150.02885 * 19 18 17 32 32 H 1.07995 * 120.41922 * 179.97438 * 21 18 17 33 33 H 1.09002 * 109.88031 * 59.48915 * 23 9 7 34 34 H 1.08998 * 110.01260 * 298.39480 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6133 1.9796 -1.3937 5 1 1.3948 2.6833 0.5813 6 1 3.4853 1.4763 0.8124 7 6 2.0102 -1.2022 0.0005 8 1 1.5312 -2.1021 0.3570 9 7 3.3023 -1.2471 -0.4509 10 6 3.9504 -0.2333 -1.3028 11 6 5.0994 -0.9893 -2.0203 12 6 5.5797 -1.9533 -0.9034 13 1 6.2743 -1.4491 -0.2314 14 8 6.1816 -3.1203 -1.4672 15 6 7.1216 -3.7488 -0.7213 16 7 7.4358 -3.2594 0.4673 17 6 8.3460 -3.8510 1.2235 18 6 8.9794 -4.9899 0.7520 19 6 10.0260 -5.6885 1.5814 20 17 11.6496 -5.0019 1.2031 21 6 8.6295 -5.4718 -0.4994 22 7 7.7069 -4.8341 -1.2011 23 6 4.2725 -2.3145 -0.1670 24 1 -0.4850 0.8401 -0.0004 25 1 3.2410 0.1599 -2.0310 26 1 4.3529 0.5745 -0.6918 27 1 5.8956 -0.3061 -2.3159 28 1 4.7235 -1.5440 -2.8801 29 1 8.5954 -3.4490 2.1944 30 1 9.8076 -5.5434 2.6394 31 1 10.0198 -6.7541 1.3519 32 1 9.1040 -6.3568 -0.8969 33 1 3.8922 -3.2681 -0.5332 34 1 4.4561 -2.3761 0.9056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223210702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = 41.004202 kcal Electronic energy + Delta-G solvation = -19530.787289 eV Core-core repulsion = 16298.515220 eV Total energy + Delta-G solvation = -3232.272069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46984 -39.05641 -36.80604 -36.34370 -34.06779 -33.19959 -32.31180 -29.84320 -28.25104 -27.09548 -25.18026 -24.31361 -22.85430 -21.17021 -20.52021 -18.84141 -18.11706 -16.92997 -16.24415 -15.86789 -15.28860 -15.23194 -14.85591 -14.52803 -14.26492 -13.86183 -13.69135 -13.44923 -13.00444 -12.50552 -12.48985 -12.00946 -11.84019 -11.52084 -11.20252 -11.10267 -10.88864 -10.84587 -10.70813 -10.50540 -10.16021 -10.07223 -9.48871 -9.34270 -9.05580 -8.71507 -7.10734 -5.97473 -3.29128 0.50625 0.82289 2.02015 2.47091 3.32001 3.46149 3.48201 3.55784 3.80382 4.10736 4.21591 4.23753 4.43947 4.51955 4.86162 4.90130 4.94728 5.00991 5.20132 5.38212 5.40036 5.48972 5.64919 5.87917 5.93786 6.12638 6.34314 6.46185 6.51054 6.63263 6.66207 7.15610 7.63982 7.90026 8.27653 8.78606 9.64375 10.10546 11.18382 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.003394 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.431810 B = 8247.112890 C = 8355.462389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.604 5.604 10 C 0.113 3.887 11 C -0.125 4.125 12 C 0.078 3.922 13 H 0.101 0.899 14 O -0.272 6.272 15 C 0.518 3.482 16 N -0.562 5.562 17 C 0.214 3.786 18 C -0.273 4.273 19 C 0.029 3.971 20 Cl -0.180 7.180 21 C 0.211 3.789 22 N -0.526 5.526 23 C 0.125 3.875 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.041 0.959 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.370 -10.646 2.216 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.111 0.889 9 N -0.333 5.333 10 C -0.012 4.012 11 C -0.164 4.164 12 C 0.021 3.979 13 H 0.119 0.881 14 O -0.171 6.171 15 C 0.217 3.783 16 N -0.290 5.290 17 C 0.047 3.953 18 C -0.279 4.279 19 C -0.035 4.035 20 Cl -0.153 7.153 21 C 0.044 3.956 22 N -0.251 5.251 23 C -0.001 4.001 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.189 0.811 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.193 0.807 33 H 0.059 0.941 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 21.321 -10.001 1.360 23.589 hybrid contribution 1.106 0.684 0.751 1.502 sum 22.427 -9.317 2.111 24.377 Atomic orbital electron populations 1.69843 1.05527 1.26680 1.52936 1.24993 0.95181 0.97406 0.99969 0.86992 0.79281 0.84684 0.77894 1.21028 1.22840 1.20143 1.18630 0.83935 0.95609 1.38815 0.88935 1.44638 1.09762 1.22099 1.56757 1.22032 0.93201 0.92504 0.93483 1.22994 0.98688 0.96949 0.97743 1.23779 0.94813 0.82511 0.96819 0.88117 1.86200 1.47701 1.41611 1.41635 1.20922 0.86417 0.86310 0.84649 1.68190 1.19324 1.34716 1.06783 1.22917 0.86329 0.88360 0.97701 1.21252 1.04392 1.02385 0.99849 1.22842 0.81068 0.99016 1.00587 1.98754 1.32721 1.87933 1.95930 1.22993 0.88273 0.95956 0.88378 1.67695 1.11827 1.08666 1.36942 1.21644 0.87644 0.93570 0.97250 0.92596 0.91336 0.95207 0.90593 0.89653 0.81054 0.87522 0.87536 0.80726 0.94091 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.04 13.97 55.49 0.78 -27.26 16 2 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 3 Si 0.88 22.44 24.27 -169.99 -4.13 18.31 16 4 H -0.28 -6.87 6.49 56.52 0.37 -6.50 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.28 -6.91 6.66 56.52 0.38 -6.53 16 7 C -0.24 -7.00 10.57 -15.06 -0.16 -7.16 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.60 -15.00 3.21 -169.94 -0.54 -15.54 16 10 C 0.11 2.46 4.70 -2.41 -0.01 2.45 16 11 C -0.13 -2.19 6.83 -24.46 -0.17 -2.36 16 12 C 0.08 1.38 3.17 -24.90 -0.08 1.30 16 13 H 0.10 1.72 7.00 -51.93 -0.36 1.36 16 14 O -0.27 -4.75 9.92 -18.08 -0.18 -4.93 16 15 C 0.52 8.06 8.49 -91.25 -0.77 7.28 16 16 N -0.56 -7.87 8.68 -14.73 -0.13 -8.00 16 17 C 0.21 2.12 11.00 -17.22 -0.19 1.93 16 18 C -0.27 -2.20 5.29 -104.36 -0.55 -2.75 16 19 C 0.03 0.14 6.83 36.01 0.25 0.39 16 20 Cl -0.18 -1.34 29.13 -51.86 -1.51 -2.85 16 21 C 0.21 1.99 11.00 -17.22 -0.19 1.80 16 22 N -0.53 -7.32 10.46 -14.73 -0.15 -7.47 16 23 C 0.12 2.63 7.02 -3.07 -0.02 2.61 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.07 1.57 6.64 -51.93 -0.34 1.22 16 26 H 0.03 0.67 5.57 -51.94 -0.29 0.38 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.11 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.11 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.04 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -33.67 300.62 -7.32 -40.99 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -3.99 Total: -3.86 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.99 Total: 6.08 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.05 Total: -58.27 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.18 Total: -4.93 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.13 Total: 18.31 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.51 Total: -2.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.67 -7.32 -40.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223210702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.990 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds