Wall clock time and date at job start Tue Mar 31 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00282 * 2 1 4 4 H 1.48500 * 109.46784 * 264.53066 * 3 2 1 5 5 H 1.48500 * 109.47063 * 24.52961 * 3 2 1 6 6 H 1.48497 * 109.47433 * 144.53177 * 3 2 1 7 7 C 1.38817 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00049 * 337.62483 * 7 2 1 9 9 N 1.36940 * 119.99826 * 157.62291 * 7 2 1 10 10 C 1.47428 * 125.64622 * 341.47767 * 9 7 2 11 11 C 1.55131 * 104.93781 * 204.03979 * 10 9 7 12 12 C 1.55154 * 101.48554 * 323.22069 * 11 10 9 13 13 H 1.09003 * 110.71595 * 276.83209 * 12 11 10 14 14 O 1.42899 * 110.71985 * 153.73769 * 12 11 10 15 15 C 1.35462 * 116.99944 * 152.44115 * 14 12 11 16 16 N 1.32324 * 119.19531 * 359.72614 * 15 14 12 17 17 C 1.32295 * 120.75592 * 179.76329 * 16 15 14 18 18 C 1.38586 * 119.17605 * 0.50038 * 17 16 15 19 19 C 1.50707 * 120.73759 * 179.72875 * 18 17 16 20 20 Cl 1.80298 * 109.47180 * 270.02523 * 19 18 17 21 21 C 1.38590 * 118.52563 * 359.75641 * 18 17 16 22 22 N 1.32299 * 119.17083 * 359.97438 * 21 18 17 23 23 C 1.47016 * 125.64837 * 161.51506 * 9 7 2 24 24 H 0.97010 * 119.99915 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.36293 * 322.99520 * 10 9 7 26 26 H 1.08989 * 110.37173 * 85.21802 * 10 9 7 27 27 H 1.09003 * 111.15964 * 205.12636 * 11 10 9 28 28 H 1.09003 * 110.93576 * 81.21385 * 11 10 9 29 29 H 1.08002 * 120.41091 * 180.23575 * 17 16 15 30 30 H 1.09000 * 109.47244 * 30.02910 * 19 18 17 31 31 H 1.09001 * 109.47141 * 150.02885 * 19 18 17 32 32 H 1.07995 * 120.41922 * 179.97438 * 21 18 17 33 33 H 1.09002 * 109.88031 * 59.48915 * 23 9 7 34 34 H 1.08998 * 110.01260 * 298.39480 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6133 1.9796 -1.3937 5 1 1.3948 2.6833 0.5813 6 1 3.4853 1.4763 0.8124 7 6 2.0102 -1.2022 0.0005 8 1 1.5312 -2.1021 0.3570 9 7 3.3023 -1.2471 -0.4509 10 6 3.9504 -0.2333 -1.3028 11 6 5.0994 -0.9893 -2.0203 12 6 5.5797 -1.9533 -0.9034 13 1 6.2743 -1.4491 -0.2314 14 8 6.1816 -3.1203 -1.4672 15 6 7.1216 -3.7488 -0.7213 16 7 7.4358 -3.2594 0.4673 17 6 8.3460 -3.8510 1.2235 18 6 8.9794 -4.9899 0.7520 19 6 10.0260 -5.6885 1.5814 20 17 11.6496 -5.0019 1.2031 21 6 8.6295 -5.4718 -0.4994 22 7 7.7069 -4.8341 -1.2011 23 6 4.2725 -2.3145 -0.1670 24 1 -0.4850 0.8401 -0.0004 25 1 3.2410 0.1599 -2.0310 26 1 4.3529 0.5745 -0.6918 27 1 5.8956 -0.3061 -2.3159 28 1 4.7235 -1.5440 -2.8801 29 1 8.5954 -3.4490 2.1944 30 1 9.8076 -5.5434 2.6394 31 1 10.0198 -6.7541 1.3519 32 1 9.1040 -6.3568 -0.8969 33 1 3.8922 -3.2681 -0.5332 34 1 4.4561 -2.3761 0.9056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223210702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:47 Heat of formation + Delta-G solvation = 15.156148 kcal Electronic energy + Delta-G solvation = -19531.908145 eV Core-core repulsion = 16298.515220 eV Total energy + Delta-G solvation = -3233.392925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39964 -40.35682 -38.27918 -36.94390 -34.97309 -34.55893 -33.80420 -31.65286 -29.83448 -27.89877 -26.40922 -25.77318 -23.77641 -22.85002 -22.04623 -19.97163 -19.30358 -18.74193 -17.44244 -17.20042 -16.73890 -16.16442 -15.84682 -15.71145 -15.33267 -15.22233 -14.69715 -14.39075 -14.28224 -14.16648 -13.93651 -13.90522 -13.24160 -12.95772 -12.65510 -12.45281 -12.18435 -12.11543 -11.87017 -11.73489 -11.52274 -11.38985 -11.35070 -10.86321 -10.25306 -9.97068 -9.16293 -8.22307 -5.52319 -0.31562 0.02948 1.30159 1.35977 1.39873 1.49301 1.51934 2.38799 2.69698 2.86889 2.98722 3.25175 3.46821 3.49327 3.58138 3.59995 3.66501 3.75645 4.02025 4.23590 4.38395 4.49057 4.55871 4.69685 4.70284 4.78518 4.79689 4.84008 5.04492 5.18193 5.57873 5.62269 6.03814 6.10198 6.66005 6.95630 7.44979 7.98998 8.97257 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.003394 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.431810 B = 8247.112890 C = 8355.462389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.304 1.304 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.055 0.945 9 N -0.623 5.623 10 C 0.105 3.895 11 C -0.113 4.113 12 C 0.097 3.903 13 H 0.111 0.889 14 O -0.290 6.290 15 C 0.489 3.511 16 N -0.585 5.585 17 C 0.201 3.799 18 C -0.249 4.249 19 C 0.034 3.966 20 Cl -0.198 7.198 21 C 0.204 3.796 22 N -0.552 5.552 23 C 0.125 3.875 24 H 0.265 0.735 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.203 0.797 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.212 0.788 33 H 0.025 0.975 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.849 -10.771 2.532 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.228 4.228 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.351 5.351 10 C -0.020 4.020 11 C -0.151 4.151 12 C 0.040 3.960 13 H 0.129 0.871 14 O -0.190 6.190 15 C 0.188 3.812 16 N -0.314 5.314 17 C 0.036 3.964 18 C -0.254 4.254 19 C -0.029 4.029 20 Cl -0.171 7.171 21 C 0.039 3.961 22 N -0.278 5.278 23 C 0.000 4.000 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.219 0.781 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.229 0.771 33 H 0.043 0.957 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 24.877 -10.162 1.683 26.925 hybrid contribution 0.104 0.483 0.734 0.884 sum 24.981 -9.680 2.417 26.900 Atomic orbital electron populations 1.69973 1.07318 1.27621 1.55072 1.25680 0.95874 1.01018 1.00231 0.85916 0.77899 0.79522 0.79100 1.18591 1.23218 1.19134 1.18521 0.85896 0.94560 1.38340 0.92738 1.44691 1.09253 1.23696 1.57478 1.22165 0.94167 0.92517 0.93107 1.22930 0.98072 0.97057 0.96998 1.23414 0.93066 0.82958 0.96569 0.87095 1.86123 1.48917 1.41684 1.42318 1.20989 0.87308 0.87408 0.85533 1.68132 1.20775 1.35780 1.06671 1.23551 0.85537 0.88885 0.98416 1.21555 1.03564 1.01018 0.99219 1.23109 0.78663 0.99876 1.01281 1.98764 1.33951 1.88333 1.96081 1.23708 0.87160 0.96500 0.88743 1.67675 1.13095 1.08653 1.38373 1.21668 0.88886 0.91891 0.97584 0.92557 0.92614 0.94472 0.86662 0.89673 0.78072 0.85091 0.84692 0.77123 0.95687 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.91 13.97 21.65 0.30 -60.61 16 2 C -0.03 -1.98 5.43 84.86 0.46 -1.52 16 3 Si 0.95 46.46 24.27 68.60 1.66 48.13 16 4 H -0.26 -11.73 6.49 99.48 0.65 -11.09 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 6 H -0.27 -12.52 6.66 99.48 0.66 -11.86 16 7 C -0.25 -14.63 10.57 84.03 0.89 -13.74 16 8 H 0.05 3.55 8.06 -2.91 -0.02 3.53 16 9 N -0.62 -31.28 3.21 -691.56 -2.22 -33.50 16 10 C 0.10 4.42 4.70 86.93 0.41 4.83 16 11 C -0.11 -3.71 6.83 32.06 0.22 -3.49 16 12 C 0.10 3.37 3.17 31.78 0.10 3.47 16 13 H 0.11 3.61 7.00 -2.39 -0.02 3.60 16 14 O -0.29 -10.00 9.92 -87.60 -0.87 -10.87 16 15 C 0.49 14.84 8.49 180.57 1.53 16.37 16 16 N -0.58 -15.58 8.68 -313.47 -2.72 -18.30 16 17 C 0.20 3.46 11.00 84.71 0.93 4.40 16 18 C -0.25 -3.19 5.29 -19.69 -0.10 -3.29 16 19 C 0.03 0.18 6.83 71.24 0.49 0.67 16 20 Cl -0.20 -2.32 29.13 -2.72 -0.08 -2.40 16 21 C 0.20 3.30 11.00 84.71 0.93 4.24 16 22 N -0.55 -14.67 10.46 -313.48 -3.28 -17.95 16 23 C 0.13 5.37 7.02 86.73 0.61 5.98 16 24 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 25 H 0.06 2.48 6.64 -2.39 -0.02 2.47 16 26 H 0.04 1.55 5.57 -2.39 -0.01 1.53 16 27 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.13 0.19 8.10 -2.39 -0.02 0.17 16 31 H 0.13 0.08 8.10 -2.39 -0.02 0.06 16 32 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.03 1.14 8.06 -2.39 -0.02 1.12 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -76.52 300.62 0.28 -76.24 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.01 Total: 1.35 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.47 Total: 17.91 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -7.92 Total: -130.36 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.87 Total: -10.87 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.66 Total: 48.13 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.08 Total: -2.40 kcal Total: -76.52 0.28 -76.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223210702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.396 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds