Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46558 * 29.99722 * 3 2 1 6 6 H 1.48489 * 109.47282 * 149.99733 * 3 2 1 7 7 C 1.37883 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00163 * 169.99954 * 10 9 7 12 12 C 1.53934 * 86.18058 * 222.41402 * 11 10 9 13 13 O 1.42905 * 113.73169 * 138.07945 * 12 11 10 14 14 C 1.35455 * 116.99852 * 151.90168 * 13 12 11 15 15 N 1.32313 * 119.19617 * 359.72253 * 14 13 12 16 16 C 1.32303 * 120.75756 * 179.76317 * 15 14 13 17 17 C 1.38588 * 119.17517 * 0.50596 * 16 15 14 18 18 C 1.50704 * 120.74114 * 179.72794 * 17 16 15 19 19 Cl 1.80302 * 109.47068 * 270.02604 * 18 17 16 20 20 C 1.38593 * 118.52270 * 359.75012 * 17 16 15 21 21 N 1.32302 * 119.17143 * 359.97438 * 20 17 16 22 22 C 1.48186 * 111.07427 * 70.56351 * 10 9 7 23 23 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 59.99989 * 9 7 2 25 25 H 1.08996 * 109.46984 * 299.99722 * 9 7 2 26 26 H 1.09001 * 113.75866 * 108.09297 * 11 10 9 27 27 H 1.09001 * 113.75942 * 336.73414 * 11 10 9 28 28 H 1.08998 * 113.73400 * 269.25164 * 12 11 10 29 29 H 1.07999 * 120.41062 * 180.23801 * 16 15 14 30 30 H 1.09004 * 109.46762 * 30.02031 * 18 17 16 31 31 H 1.08994 * 109.47278 * 150.02066 * 18 17 16 32 32 H 1.07996 * 120.41597 * 179.97438 * 20 17 16 33 33 H 1.09000 * 113.75847 * 23.23813 * 22 10 9 34 34 H 1.08998 * 113.82742 * 251.81086 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5160 -4.9029 0.2373 12 6 2.6919 -5.2418 1.1711 13 8 2.2952 -5.8757 2.3888 14 6 3.1935 -6.7057 2.9710 15 7 4.3696 -6.8910 2.3939 16 6 5.2718 -7.6912 2.9382 17 6 4.9679 -8.3464 4.1210 18 6 5.9668 -9.2706 4.7682 19 17 5.7321 -10.9443 4.1400 20 6 3.7246 -8.1331 4.6951 21 7 2.8714 -7.3153 4.1004 22 6 2.9005 -3.7223 1.3030 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5564 -0.8919 25 1 0.6240 -2.5576 0.8880 26 1 1.4580 -5.5403 -0.6450 27 1 0.5611 -4.8005 0.7529 28 1 3.5138 -5.7558 0.6727 29 1 6.2315 -7.8353 2.4643 30 1 6.9771 -8.9337 4.5359 31 1 5.8211 -9.2642 5.8484 32 1 3.4556 -8.6283 5.6163 33 1 2.3515 -3.2739 2.1310 34 1 3.9467 -3.4183 1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223211677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = 45.921331 kcal Electronic energy + Delta-G solvation = -19044.916434 eV Core-core repulsion = 15812.857587 eV Total energy + Delta-G solvation = -3232.058847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48212 -39.61314 -37.31951 -36.39633 -34.08078 -33.19310 -32.79720 -29.33048 -27.24113 -25.83969 -25.37198 -24.79796 -23.02022 -21.63466 -19.58544 -18.94923 -17.98831 -16.53731 -16.10983 -15.90887 -15.33254 -15.24107 -14.83365 -14.44472 -14.31667 -13.98794 -13.76981 -13.75629 -12.70513 -12.43931 -12.12935 -11.97311 -11.86050 -11.56292 -11.21125 -10.96783 -10.88406 -10.83117 -10.68813 -10.34708 -10.29865 -9.77484 -9.37208 -9.20790 -9.02568 -8.53028 -7.93197 -6.08104 -4.10459 0.49252 0.80487 2.00607 2.49741 3.29780 3.35485 3.39216 3.53749 3.78317 4.09112 4.19814 4.22095 4.37714 4.46033 4.64808 4.81518 4.85425 4.98881 5.27995 5.31939 5.47055 5.56951 5.88104 5.99875 6.08821 6.26801 6.34358 6.54799 6.58250 7.12465 7.16711 7.56633 7.80878 7.89355 8.03178 8.34623 8.96313 9.54088 11.03187 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041466 B = 0.002825 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.083320 B = 9910.056386 C =10106.015740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.470 5.470 11 C 0.005 3.995 12 C 0.051 3.949 13 O -0.274 6.274 14 C 0.518 3.482 15 N -0.564 5.564 16 C 0.213 3.787 17 C -0.274 4.274 18 C 0.029 3.971 19 Cl -0.179 7.179 20 C 0.212 3.788 21 N -0.527 5.527 22 C 0.013 3.987 23 H 0.263 0.737 24 H 0.036 0.964 25 H 0.002 0.998 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.172 0.828 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.175 0.825 33 H 0.077 0.923 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -19.826 10.392 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.195 5.195 11 C -0.124 4.124 12 C -0.006 4.006 13 O -0.173 6.173 14 C 0.217 3.783 15 N -0.292 5.292 16 C 0.046 3.954 17 C -0.280 4.280 18 C -0.035 4.035 19 Cl -0.153 7.153 20 C 0.044 3.956 21 N -0.252 5.252 22 C -0.116 4.116 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.020 0.980 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.141 0.859 29 H 0.189 0.811 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.192 0.808 33 H 0.095 0.905 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.199 -18.910 9.286 23.858 hybrid contribution 0.506 0.376 0.946 1.137 sum 11.705 -18.533 10.232 24.191 Atomic orbital electron populations 1.69951 1.06087 1.26954 1.50580 1.24996 0.94896 0.99433 0.95198 0.86462 0.79680 0.82885 0.78196 1.20518 1.21224 1.19832 1.21071 0.93460 0.89850 1.50746 0.91915 1.20241 0.90816 0.88322 0.96946 1.68656 1.21435 1.01950 1.27479 1.24268 0.96153 0.94918 0.97061 1.25236 1.00348 0.93381 0.81609 1.86302 1.37583 1.53811 1.39628 1.20967 0.84862 0.86336 0.86136 1.68135 1.03382 1.21923 1.35776 1.22904 0.97092 0.86110 0.89251 1.21249 0.99395 1.05840 1.01479 1.22838 0.99347 0.81181 1.00155 1.98755 1.98012 1.28733 1.89790 1.23007 0.87011 0.88684 0.96871 1.67722 1.35983 1.11752 1.09717 1.24241 1.01693 0.91424 0.94213 0.92784 0.94570 0.97991 0.89126 0.90641 0.85927 0.81066 0.87553 0.87557 0.80755 0.90472 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.56 8.84 -34.43 -0.30 -14.86 16 8 H 0.06 1.76 7.80 -52.49 -0.41 1.35 16 9 C 0.16 4.28 4.58 -4.97 -0.02 4.26 16 10 N -0.47 -10.33 6.25 -239.76 -1.50 -11.83 16 11 C 0.01 0.09 7.81 -2.76 -0.02 0.07 16 12 C 0.05 0.87 4.32 -25.80 -0.11 0.76 16 13 O -0.27 -4.76 10.22 -18.06 -0.18 -4.95 16 14 C 0.52 7.91 8.49 -91.26 -0.77 7.13 16 15 N -0.56 -7.50 8.63 -14.74 -0.13 -7.63 16 16 C 0.21 1.98 11.00 -17.22 -0.19 1.79 16 17 C -0.27 -2.11 5.29 -104.36 -0.55 -2.66 16 18 C 0.03 0.13 6.83 36.01 0.25 0.38 16 19 Cl -0.18 -1.29 29.13 -51.86 -1.51 -2.80 16 20 C 0.21 1.97 11.00 -17.22 -0.19 1.78 16 21 N -0.53 -7.30 10.46 -14.74 -0.15 -7.45 16 22 C 0.01 0.26 7.32 -2.63 -0.02 0.24 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.00 0.06 7.70 -51.93 -0.40 -0.34 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.42 7.79 -51.93 -0.40 1.02 16 28 H 0.12 1.97 6.88 -51.93 -0.36 1.61 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.11 0.29 8.10 -51.93 -0.42 -0.13 16 31 H 0.11 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.08 1.64 7.79 -51.93 -0.40 1.23 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 312.79 15.07 4.71 4.71 Total: -1.00 -32.80 312.79 -9.15 -41.94 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.07 Total: -3.09 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.04 Total: 0.41 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -1.04 Total: -52.95 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.18 Total: -4.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.51 Total: -2.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.80 -9.15 -41.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223211677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.865 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds