Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46558 * 29.99722 * 3 2 1 6 6 H 1.48489 * 109.47282 * 149.99733 * 3 2 1 7 7 C 1.37883 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00163 * 169.99954 * 10 9 7 12 12 C 1.53934 * 86.18058 * 222.41402 * 11 10 9 13 13 O 1.42905 * 113.73169 * 138.07945 * 12 11 10 14 14 C 1.35455 * 116.99852 * 151.90168 * 13 12 11 15 15 N 1.32313 * 119.19617 * 359.72253 * 14 13 12 16 16 C 1.32303 * 120.75756 * 179.76317 * 15 14 13 17 17 C 1.38588 * 119.17517 * 0.50596 * 16 15 14 18 18 C 1.50704 * 120.74114 * 179.72794 * 17 16 15 19 19 Cl 1.80302 * 109.47068 * 270.02604 * 18 17 16 20 20 C 1.38593 * 118.52270 * 359.75012 * 17 16 15 21 21 N 1.32302 * 119.17143 * 359.97438 * 20 17 16 22 22 C 1.48186 * 111.07427 * 70.56351 * 10 9 7 23 23 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 59.99989 * 9 7 2 25 25 H 1.08996 * 109.46984 * 299.99722 * 9 7 2 26 26 H 1.09001 * 113.75866 * 108.09297 * 11 10 9 27 27 H 1.09001 * 113.75942 * 336.73414 * 11 10 9 28 28 H 1.08998 * 113.73400 * 269.25164 * 12 11 10 29 29 H 1.07999 * 120.41062 * 180.23801 * 16 15 14 30 30 H 1.09004 * 109.46762 * 30.02031 * 18 17 16 31 31 H 1.08994 * 109.47278 * 150.02066 * 18 17 16 32 32 H 1.07996 * 120.41597 * 179.97438 * 20 17 16 33 33 H 1.09000 * 113.75847 * 23.23813 * 22 10 9 34 34 H 1.08998 * 113.82742 * 251.81086 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5160 -4.9029 0.2373 12 6 2.6919 -5.2418 1.1711 13 8 2.2952 -5.8757 2.3888 14 6 3.1935 -6.7057 2.9710 15 7 4.3696 -6.8910 2.3939 16 6 5.2718 -7.6912 2.9382 17 6 4.9679 -8.3464 4.1210 18 6 5.9668 -9.2706 4.7682 19 17 5.7321 -10.9443 4.1400 20 6 3.7246 -8.1331 4.6951 21 7 2.8714 -7.3153 4.1004 22 6 2.9005 -3.7223 1.3030 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5564 -0.8919 25 1 0.6240 -2.5576 0.8880 26 1 1.4580 -5.5403 -0.6450 27 1 0.5611 -4.8005 0.7529 28 1 3.5138 -5.7558 0.6727 29 1 6.2315 -7.8353 2.4643 30 1 6.9771 -8.9337 4.5359 31 1 5.8211 -9.2642 5.8484 32 1 3.4556 -8.6283 5.6163 33 1 2.3515 -3.2739 2.1310 34 1 3.9467 -3.4183 1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223211677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = 19.643961 kcal Electronic energy + Delta-G solvation = -19046.055906 eV Core-core repulsion = 15812.857587 eV Total energy + Delta-G solvation = -3233.198319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41833 -41.02757 -38.61922 -36.93406 -35.07196 -34.93484 -33.83465 -31.20419 -28.08748 -27.43278 -26.85001 -25.89686 -24.12641 -23.18333 -21.10314 -20.07353 -18.98970 -18.58796 -17.26723 -17.07168 -16.73343 -16.29434 -15.99957 -15.68014 -15.52165 -15.04704 -14.68987 -14.37116 -14.27124 -13.97948 -13.83501 -13.69739 -13.30211 -12.84088 -12.62888 -12.58012 -12.25273 -12.11537 -11.67109 -11.64639 -11.39911 -11.34813 -11.24866 -10.68878 -10.25477 -9.96285 -9.77061 -8.27076 -6.38380 -0.31498 0.03439 1.38123 1.40585 1.40821 1.51802 1.52937 2.36678 2.68732 2.89426 3.05586 3.09427 3.32904 3.45807 3.53039 3.60635 3.74481 3.96554 4.20696 4.41650 4.49073 4.53624 4.59156 4.62816 4.72836 4.79659 4.84126 5.00714 5.17732 5.43889 5.62477 5.69018 6.00172 6.10391 6.26987 6.75524 6.96297 7.31501 8.84965 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041466 B = 0.002825 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.083320 B = 9910.056386 C =10106.015740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.178 3.822 10 N -0.480 5.480 11 C 0.004 3.996 12 C 0.082 3.918 13 O -0.298 6.298 14 C 0.489 3.511 15 N -0.581 5.581 16 C 0.203 3.797 17 C -0.249 4.249 18 C 0.034 3.966 19 Cl -0.198 7.198 20 C 0.203 3.797 21 N -0.557 5.557 22 C 0.010 3.990 23 H 0.266 0.734 24 H 0.010 0.990 25 H -0.025 1.025 26 H 0.116 0.884 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.207 0.793 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.210 0.790 33 H 0.055 0.945 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 -20.943 11.396 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.051 3.949 10 N -0.205 5.205 11 C -0.125 4.125 12 C 0.025 3.975 13 O -0.199 6.199 14 C 0.187 3.813 15 N -0.310 5.310 16 C 0.038 3.962 17 C -0.254 4.254 18 C -0.029 4.029 19 Cl -0.172 7.172 20 C 0.038 3.962 21 N -0.283 5.283 22 C -0.119 4.119 23 H 0.075 0.925 24 H 0.028 0.972 25 H -0.008 1.008 26 H 0.134 0.866 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.223 0.777 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.227 0.773 33 H 0.073 0.927 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.874 -20.079 10.314 26.496 hybrid contribution -0.236 0.556 0.754 0.966 sum 13.638 -19.523 11.068 26.262 Atomic orbital electron populations 1.70078 1.07796 1.28162 1.51235 1.25966 0.95817 1.03431 0.94448 0.85323 0.78480 0.77857 0.78627 1.19563 1.20572 1.18805 1.21387 0.93605 0.91031 1.50956 0.91934 1.19891 0.90878 0.89832 0.94325 1.68531 1.20961 1.01991 1.28991 1.24328 0.96137 0.93417 0.98630 1.24739 0.99524 0.91588 0.81677 1.86205 1.38982 1.55035 1.39655 1.21000 0.85519 0.87523 0.87223 1.68085 1.03293 1.23183 1.36481 1.23596 0.97534 0.85224 0.89854 1.21562 0.99123 1.04498 1.00214 1.23115 0.99563 0.78959 1.01274 1.98766 1.98092 1.30209 1.90143 1.23695 0.87127 0.87723 0.97694 1.67675 1.37909 1.12933 1.09750 1.24212 1.01360 0.93978 0.92364 0.92471 0.97159 1.00759 0.86562 0.91729 0.84445 0.77668 0.84861 0.84811 0.77348 0.92697 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.53 -30.93 8.84 25.60 0.23 -30.70 16 8 H 0.06 3.56 7.80 -2.91 -0.02 3.54 16 9 C 0.18 9.80 4.58 85.56 0.39 10.19 16 10 N -0.48 -21.70 6.25 -915.69 -5.72 -27.42 16 11 C 0.00 0.14 7.81 86.41 0.67 0.81 16 12 C 0.08 2.82 4.32 31.24 0.13 2.96 16 13 O -0.30 -10.61 10.22 -87.53 -0.89 -11.51 16 14 C 0.49 14.86 8.49 180.57 1.53 16.39 16 15 N -0.58 -14.76 8.63 -313.49 -2.70 -17.46 16 16 C 0.20 3.22 11.00 84.71 0.93 4.15 16 17 C -0.25 -3.04 5.29 -19.69 -0.10 -3.14 16 18 C 0.03 0.16 6.83 71.24 0.49 0.65 16 19 Cl -0.20 -2.26 29.13 -2.72 -0.08 -2.34 16 20 C 0.20 3.31 11.00 84.71 0.93 4.24 16 21 N -0.56 -15.09 10.46 -313.49 -3.28 -18.37 16 22 C 0.01 0.41 7.32 86.37 0.63 1.04 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 25 H -0.03 -1.50 7.70 -2.39 -0.02 -1.52 16 26 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.06 2.56 7.79 -2.39 -0.02 2.54 16 28 H 0.14 4.32 6.88 -2.39 -0.02 4.30 16 29 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.13 0.04 8.10 -2.38 -0.02 0.02 16 31 H 0.13 0.02 8.10 -2.39 -0.02 0.00 16 32 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.05 2.47 7.79 -2.39 -0.02 2.45 16 34 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 Total: -1.00 -74.00 312.79 -2.96 -76.96 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.11 Total: 2.95 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.30 Total: 7.15 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -11.42 Total: -120.02 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.89 Total: -11.51 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -74.00 -2.96 -76.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223211677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.599 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds