Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48497 * 109.46865 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47384 * 299.99646 * 3 2 1 6 6 H 1.48505 * 109.46775 * 59.99830 * 3 2 1 7 7 C 1.38633 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99596 * 180.02562 * 7 2 1 9 9 O 1.34918 * 120.00295 * 0.02562 * 7 2 1 10 10 C 1.42906 * 117.00293 * 179.97438 * 9 7 2 11 11 C 1.53117 * 109.52358 * 150.00214 * 10 9 7 12 12 C 1.53039 * 109.27552 * 177.56476 * 11 10 9 13 13 N 1.46849 * 109.52130 * 300.81608 * 12 11 10 14 14 C 1.38536 * 110.99891 * 185.84233 * 13 12 11 15 15 C 1.39668 * 120.52328 * 180.24997 * 14 13 12 16 16 C 1.38070 * 118.36627 * 180.24275 * 15 14 13 17 17 N 1.32573 * 119.21348 * 359.50820 * 16 15 14 18 18 C 1.31892 * 120.99981 * 0.25837 * 17 16 15 19 19 Cl 1.73596 * 119.10369 * 180.02562 * 18 17 16 20 20 N 1.31904 * 121.79518 * 359.97438 * 18 17 16 21 21 C 1.46846 * 111.19898 * 61.74624 * 13 12 11 22 22 C 1.53043 * 109.52241 * 298.25864 * 21 13 12 23 23 H 0.97003 * 120.00279 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.57126 * 29.84277 * 10 9 7 25 25 H 1.08997 * 109.50748 * 57.61776 * 11 10 9 26 26 H 1.09003 * 109.50074 * 297.49556 * 11 10 9 27 27 H 1.08999 * 109.46227 * 180.80664 * 12 11 10 28 28 H 1.08998 * 109.46844 * 60.83266 * 12 11 10 29 29 H 1.08008 * 120.81887 * 0.02562 * 15 14 13 30 30 H 1.08002 * 120.39677 * 179.79156 * 16 15 14 31 31 H 1.09000 * 109.46166 * 58.26976 * 21 13 12 32 32 H 1.08999 * 109.46408 * 178.24482 * 21 13 12 33 33 H 1.09002 * 109.49783 * 299.23865 * 22 21 13 34 34 H 1.08994 * 109.50409 * 179.12066 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8912 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0005 11 6 1.3431 -4.6774 0.7221 12 6 2.1546 -5.9737 0.6658 13 7 2.3876 -6.3463 -0.7354 14 6 3.0063 -7.5827 -0.8240 15 6 3.3261 -8.1283 -2.0693 16 6 3.9375 -9.3657 -2.1059 17 7 4.2085 -9.9874 -0.9668 18 6 3.8985 -9.4439 0.1943 19 17 4.2766 -10.3011 1.6557 20 7 3.3098 -8.2663 0.2752 21 6 3.1659 -5.3170 -1.4362 22 6 2.3846 -4.0010 -1.4426 23 1 -0.4851 0.8400 -0.0004 24 1 3.0587 -3.3887 0.5116 25 1 0.3803 -4.8293 0.2341 26 1 1.1837 -4.3928 1.7621 27 1 1.6029 -6.7695 1.1662 28 1 3.1115 -5.8252 1.1661 29 1 3.0975 -7.5969 -2.9814 30 1 4.1961 -9.8197 -3.0511 31 1 4.1181 -5.1715 -0.9260 32 1 3.3488 -5.6358 -2.4624 33 1 1.4383 -4.1423 -1.9647 34 1 2.9693 -3.2332 -1.9492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = 20.910741 kcal Electronic energy + Delta-G solvation = -19645.379195 eV Core-core repulsion = 16412.235808 eV Total energy + Delta-G solvation = -3233.143387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47889 -39.01093 -37.09002 -36.34257 -33.90659 -32.75894 -31.58146 -30.71419 -30.06979 -25.30947 -24.79236 -24.12429 -22.58315 -22.30325 -19.60462 -18.23902 -17.92171 -17.52012 -16.10813 -15.70650 -15.57446 -15.28467 -14.72918 -14.17627 -14.15988 -14.08215 -13.54500 -13.33484 -12.53661 -12.12091 -12.06994 -11.68880 -11.49653 -11.47093 -11.34511 -11.16655 -11.07149 -10.91769 -10.74655 -10.35414 -9.96464 -9.90348 -9.62799 -9.46757 -9.13622 -8.61922 -8.01957 -5.98656 -3.62644 0.54016 0.78788 1.21177 3.14566 3.27617 3.31097 3.35289 3.44824 3.90199 4.25736 4.38399 4.56225 4.82218 4.96329 5.06747 5.14364 5.17839 5.33599 5.38479 5.50032 5.63756 5.76699 5.84845 5.95873 6.06743 6.13732 6.37660 6.50874 6.60439 6.75245 6.82185 6.93901 6.96551 7.43175 7.66264 8.38990 9.44783 10.12244 11.22071 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.003367 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.162197 B = 8312.900083 C = 8628.835196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.023 3.977 3 Si 0.923 3.077 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.361 4.361 8 H 0.062 0.938 9 O -0.283 6.283 10 C 0.097 3.903 11 C -0.116 4.116 12 C 0.070 3.930 13 N -0.466 5.466 14 C 0.381 3.619 15 C -0.245 4.245 16 C 0.176 3.824 17 N -0.536 5.536 18 C 0.390 3.610 19 Cl 0.018 6.982 20 N -0.546 5.546 21 C 0.065 3.935 22 C -0.138 4.138 23 H 0.258 0.742 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.518 -17.981 -3.287 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.750 3.250 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.441 4.441 8 H 0.080 0.920 9 O -0.197 6.197 10 C 0.037 3.963 11 C -0.154 4.154 12 C -0.056 4.056 13 N -0.182 5.182 14 C 0.140 3.860 15 C -0.271 4.271 16 C 0.015 3.985 17 N -0.256 5.256 18 C 0.094 3.906 19 Cl 0.046 6.954 20 N -0.270 5.270 21 C -0.060 4.060 22 C -0.176 4.176 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.174 0.826 30 H 0.195 0.805 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.940 -18.344 -2.564 20.152 hybrid contribution 1.049 1.186 -0.309 1.613 sum 8.989 -17.158 -2.873 19.582 Atomic orbital electron populations 1.70028 1.05376 1.25821 1.51772 1.24943 0.95637 0.97701 0.99211 0.85932 0.78804 0.82496 0.77767 1.19971 1.20878 1.20874 1.20898 0.90079 0.82735 1.50351 0.91985 1.85708 1.31355 1.10109 1.92546 1.21756 0.93999 0.88027 0.92533 1.21706 0.99739 0.92083 1.01891 1.22114 1.00586 0.98319 0.84624 1.58876 1.41185 1.00075 1.18042 1.20177 0.85352 0.92153 0.88283 1.22487 1.06093 0.99421 0.99082 1.22994 0.89559 0.90039 0.95947 1.67901 1.23205 1.36790 0.97676 1.22716 0.91919 0.87379 0.88597 1.98433 1.91958 1.74341 1.30649 1.67838 1.17288 1.08917 1.32999 1.22387 0.94624 0.90855 0.98112 1.22230 1.00967 0.93496 1.00905 0.93241 0.94422 0.90534 0.90395 0.89349 0.92828 0.82567 0.80468 0.93279 0.89850 0.90392 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.67 55.48 0.76 -26.58 16 2 C 0.02 0.67 5.49 -17.51 -0.10 0.58 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.36 -10.23 9.78 30.88 0.30 -9.93 16 8 H 0.06 1.66 7.64 -52.49 -0.40 1.26 16 9 O -0.28 -7.73 9.43 -16.48 -0.16 -7.89 16 10 C 0.10 1.98 2.72 -26.61 -0.07 1.91 16 11 C -0.12 -2.05 5.75 -26.65 -0.15 -2.21 16 12 C 0.07 1.04 4.67 -3.83 -0.02 1.02 16 13 N -0.47 -6.51 4.68 -173.05 -0.81 -7.32 16 14 C 0.38 4.98 6.41 -154.80 -0.99 3.98 16 15 C -0.25 -2.47 9.27 -39.11 -0.36 -2.83 16 16 C 0.18 1.63 11.29 -17.29 -0.20 1.43 16 17 N -0.54 -6.43 10.40 -11.72 -0.12 -6.55 16 18 C 0.39 5.09 8.18 -91.98 -0.75 4.34 16 19 Cl 0.02 0.21 29.27 -51.86 -1.52 -1.31 16 20 N -0.55 -7.63 8.82 -10.87 -0.10 -7.73 16 21 C 0.07 0.87 5.25 -3.83 -0.02 0.85 16 22 C -0.14 -2.36 5.72 -26.65 -0.15 -2.51 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.04 0.77 7.80 -51.92 -0.41 0.37 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.09 1.28 7.73 -51.93 -0.40 0.88 16 28 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.16 1.20 7.21 -52.48 -0.38 0.82 16 30 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.89 6.73 -51.93 -0.35 0.54 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -32.77 303.98 -8.93 -41.70 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.03 Total: -2.13 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.51 Total: -3.37 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.27 Total: -48.18 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.16 Total: -7.89 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.77 -8.93 -41.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.609 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds