Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38631 * 120.99532 * 2 1 4 4 C 1.39246 * 117.93054 * 179.97438 * 3 2 1 5 5 O 1.35723 * 120.12379 * 179.97438 * 4 3 2 6 6 C 1.42901 * 117.00014 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.88521 * 32.41917 * 6 5 4 8 8 C 1.55150 * 111.03696 * 156.32786 * 6 5 4 9 9 C 1.54333 * 103.02377 * 153.39550 * 8 6 5 10 10 N 1.47027 * 107.26095 * 338.13797 * 9 8 6 11 11 C 1.36935 * 125.64587 * 178.85000 * 10 9 8 12 12 H 1.08000 * 119.99754 * 189.38645 * 11 10 9 13 13 C 1.38817 * 120.00145 * 9.38954 * 11 10 9 14 14 N 1.31620 * 119.99782 * 209.16550 * 13 11 10 15 15 Si 1.86799 * 119.99851 * 29.16455 * 13 11 10 16 16 H 1.48501 * 109.47117 * 275.35691 * 15 13 11 17 17 H 1.48498 * 109.47233 * 35.35494 * 15 13 11 18 18 H 1.48500 * 109.46874 * 155.35570 * 15 13 11 19 19 C 1.47420 * 108.70299 * 358.58553 * 10 9 8 20 20 N 1.32322 * 119.75635 * 0.25015 * 4 3 2 21 21 N 1.28352 * 122.11603 * 359.47858 * 20 4 3 22 22 C 1.31927 * 122.23916 * 0.52980 * 21 20 4 23 23 Cl 1.73602 * 120.02773 * 179.71099 * 22 21 20 24 24 H 1.09000 * 109.47291 * 89.99765 * 1 2 3 25 25 H 1.09001 * 109.47492 * 210.00181 * 1 2 3 26 26 H 1.09000 * 109.46949 * 329.99941 * 1 2 3 27 27 H 1.07999 * 121.03792 * 0.02562 * 3 2 1 28 28 H 1.09004 * 110.72137 * 271.95070 * 8 6 5 29 29 H 1.08998 * 110.72089 * 35.04533 * 8 6 5 30 30 H 1.08999 * 109.99033 * 218.67061 * 9 8 6 31 31 H 1.08992 * 109.78115 * 97.49398 * 9 8 6 32 32 H 0.96997 * 120.00085 * 4.89661 * 14 13 11 33 33 H 1.09008 * 110.36593 * 143.19471 * 19 10 9 34 34 H 1.08995 * 110.37107 * 265.40714 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2209 1.1884 0.0000 4 6 3.6114 1.1139 0.0006 5 8 4.3544 2.2497 0.0000 6 6 5.7750 2.0957 0.0001 7 1 6.0687 1.1989 -0.5455 8 6 6.4717 3.3539 -0.5819 9 6 7.8569 3.3304 0.0983 10 7 7.7297 2.5214 1.3193 11 6 8.7416 2.2364 2.1968 12 1 8.5871 1.5113 2.9821 13 6 9.9659 2.8796 2.0770 14 7 11.0677 2.2756 2.4690 15 14 10.0497 4.6022 1.3595 16 1 10.1005 4.5193 -0.1223 17 1 8.8465 5.3691 1.7713 18 1 11.2686 5.2877 1.8591 19 6 6.3310 2.0731 1.4458 20 7 4.2058 -0.0683 -0.0040 21 7 3.5411 -1.1663 0.0010 22 6 2.2220 -1.1904 0.0006 23 17 1.3809 -2.7091 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.7145 2.1422 0.0004 28 1 6.5698 3.2744 -1.6646 29 1 5.9253 4.2573 -0.3109 30 1 8.1628 4.3444 0.3557 31 1 8.5889 2.8787 -0.5711 32 1 11.0339 1.3558 2.7751 33 1 6.2919 1.0621 1.8516 34 1 5.7691 2.7579 2.0808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229063816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = 48.574097 kcal Electronic energy + Delta-G solvation = -19654.980572 eV Core-core repulsion = 16423.036758 eV Total energy + Delta-G solvation = -3231.943814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52706 -39.15913 -37.18775 -36.69159 -34.85887 -32.65321 -31.53623 -29.63294 -28.87487 -27.96028 -24.82874 -24.27537 -22.91821 -21.02325 -20.46797 -18.55011 -17.97103 -17.44450 -17.29930 -16.20550 -15.36017 -15.11658 -14.37149 -14.25602 -13.92328 -13.76044 -13.56516 -13.42873 -12.95862 -12.68904 -12.40687 -12.36751 -11.98902 -11.78332 -11.63308 -11.35852 -11.09537 -10.63732 -10.57091 -10.34678 -10.13108 -9.81021 -9.59321 -9.21921 -9.08282 -8.46352 -7.12726 -6.37924 -3.19587 0.36544 0.59512 1.36892 2.70518 3.14151 3.42689 3.52871 3.70290 3.78319 4.08726 4.26174 4.33826 4.62523 4.72334 4.89008 4.98521 5.04193 5.14975 5.19900 5.31691 5.36913 5.45968 5.49916 5.58464 5.77830 5.92897 6.06534 6.31967 6.43720 6.48815 6.69676 7.09049 7.66045 8.31328 8.32804 9.00586 9.54932 10.20604 11.11539 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003712 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.883439 B = 7542.299246 C = 8076.208526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 C -0.132 4.132 4 C 0.282 3.718 5 O -0.283 6.283 6 C 0.068 3.932 7 H 0.102 0.898 8 C -0.122 4.122 9 C 0.120 3.880 10 N -0.603 5.603 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.011 4.011 14 N -0.910 5.910 15 Si 1.052 2.948 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.297 1.297 19 C 0.123 3.877 20 N -0.278 5.278 21 N -0.183 5.183 22 C 0.071 3.929 23 Cl -0.010 7.010 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.054 0.946 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.060 -3.111 -7.967 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.162 4.162 4 C 0.097 3.903 5 O -0.186 6.186 6 C 0.011 3.989 7 H 0.120 0.880 8 C -0.160 4.160 9 C -0.005 4.005 10 N -0.332 5.332 11 C -0.460 4.460 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.549 5.549 15 Si 0.884 3.116 16 H -0.220 1.220 17 H -0.220 1.220 18 H -0.225 1.225 19 C -0.004 4.004 20 N -0.136 5.136 21 N -0.028 5.028 22 C -0.103 4.103 23 Cl 0.018 6.982 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.183 0.817 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -21.630 -2.512 -8.210 23.272 hybrid contribution -2.263 -0.642 0.401 2.387 sum -23.893 -3.154 -7.809 25.334 Atomic orbital electron populations 1.20925 0.87826 1.04713 1.04074 1.20735 0.98798 0.90570 0.94891 1.21438 0.91106 1.00108 1.03526 1.21584 0.90295 0.88085 0.90323 1.86277 1.21449 1.25110 1.85741 1.23952 0.74246 1.00589 1.00073 0.87963 1.22717 0.96380 0.96821 1.00093 1.21654 0.94086 0.95612 0.89103 1.44678 1.04397 1.60419 1.23697 1.20034 0.90834 1.23022 1.12160 0.90270 1.25759 0.90501 1.04799 1.00225 1.70885 1.26597 1.13893 1.43535 0.84015 0.74195 0.77714 0.75658 1.21966 1.22048 1.22488 1.21859 0.87123 0.98976 0.92425 1.73303 1.29339 0.93966 1.17016 1.72722 1.04993 1.18960 1.06170 1.23220 0.92372 0.88729 1.06017 1.98396 1.74417 1.28733 1.96673 0.89236 0.89716 0.89785 0.81744 0.90326 0.90237 0.94866 0.93470 0.92464 0.92795 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.69 36.01 0.35 -0.29 16 2 C -0.04 -0.37 5.93 -104.24 -0.62 -0.99 16 3 C -0.13 -1.38 9.87 -39.06 -0.39 -1.76 16 4 C 0.28 4.06 7.57 -16.97 -0.13 3.93 16 5 O -0.28 -4.39 9.94 -18.88 -0.19 -4.57 16 6 C 0.07 1.21 3.24 -24.59 -0.08 1.13 16 7 H 0.10 1.87 7.18 -51.93 -0.37 1.50 16 8 C -0.12 -2.07 6.68 -24.89 -0.17 -2.24 16 9 C 0.12 2.64 4.94 -3.06 -0.02 2.63 16 10 N -0.60 -15.26 3.29 -170.07 -0.56 -15.82 16 11 C -0.33 -9.77 10.41 -15.06 -0.16 -9.93 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 13 C -0.01 -0.34 5.41 -17.43 -0.09 -0.43 16 14 N -0.91 -28.63 13.70 55.49 0.76 -27.87 16 15 Si 1.05 26.63 24.71 -169.99 -4.20 22.43 16 16 H -0.29 -6.88 6.70 56.52 0.38 -6.50 16 17 H -0.29 -7.12 6.84 56.52 0.39 -6.73 16 18 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 19 C 0.12 2.63 6.97 -2.53 -0.02 2.61 16 20 N -0.28 -4.59 9.91 30.50 0.30 -4.28 16 21 N -0.18 -2.84 11.48 32.89 0.38 -2.46 16 22 C 0.07 0.85 7.36 -17.28 -0.13 0.72 16 23 Cl -0.01 -0.10 27.61 -51.86 -1.43 -1.53 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.43 7.02 -51.93 -0.36 0.07 16 26 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 27 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.03 0.76 3.91 -51.93 -0.20 0.56 16 31 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 32 H 0.27 8.27 8.73 -40.82 -0.36 7.92 16 33 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 299.01 15.07 4.51 4.51 Total: -1.00 -33.03 299.01 -5.79 -38.83 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -3.92 Total: -4.60 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.44 Total: -4.62 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.88 Total: -50.43 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.19 Total: -4.57 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.20 Total: 22.43 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.43 Total: -1.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.03 -5.79 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229063816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.400 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds