Wall clock time and date at job start Tue Mar 31 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38631 * 120.99532 * 2 1 4 4 C 1.39246 * 117.93054 * 179.97438 * 3 2 1 5 5 O 1.35723 * 120.12379 * 179.97438 * 4 3 2 6 6 C 1.42901 * 117.00014 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.88521 * 32.41917 * 6 5 4 8 8 C 1.55150 * 111.03696 * 156.32786 * 6 5 4 9 9 C 1.54333 * 103.02377 * 153.39550 * 8 6 5 10 10 N 1.47027 * 107.26095 * 338.13797 * 9 8 6 11 11 C 1.36935 * 125.64587 * 178.85000 * 10 9 8 12 12 H 1.08000 * 119.99754 * 189.38645 * 11 10 9 13 13 C 1.38817 * 120.00145 * 9.38954 * 11 10 9 14 14 N 1.31620 * 119.99782 * 209.16550 * 13 11 10 15 15 Si 1.86799 * 119.99851 * 29.16455 * 13 11 10 16 16 H 1.48501 * 109.47117 * 275.35691 * 15 13 11 17 17 H 1.48498 * 109.47233 * 35.35494 * 15 13 11 18 18 H 1.48500 * 109.46874 * 155.35570 * 15 13 11 19 19 C 1.47420 * 108.70299 * 358.58553 * 10 9 8 20 20 N 1.32322 * 119.75635 * 0.25015 * 4 3 2 21 21 N 1.28352 * 122.11603 * 359.47858 * 20 4 3 22 22 C 1.31927 * 122.23916 * 0.52980 * 21 20 4 23 23 Cl 1.73602 * 120.02773 * 179.71099 * 22 21 20 24 24 H 1.09000 * 109.47291 * 89.99765 * 1 2 3 25 25 H 1.09001 * 109.47492 * 210.00181 * 1 2 3 26 26 H 1.09000 * 109.46949 * 329.99941 * 1 2 3 27 27 H 1.07999 * 121.03792 * 0.02562 * 3 2 1 28 28 H 1.09004 * 110.72137 * 271.95070 * 8 6 5 29 29 H 1.08998 * 110.72089 * 35.04533 * 8 6 5 30 30 H 1.08999 * 109.99033 * 218.67061 * 9 8 6 31 31 H 1.08992 * 109.78115 * 97.49398 * 9 8 6 32 32 H 0.96997 * 120.00085 * 4.89661 * 14 13 11 33 33 H 1.09008 * 110.36593 * 143.19471 * 19 10 9 34 34 H 1.08995 * 110.37107 * 265.40714 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2209 1.1884 0.0000 4 6 3.6114 1.1139 0.0006 5 8 4.3544 2.2497 0.0000 6 6 5.7750 2.0957 0.0001 7 1 6.0687 1.1989 -0.5455 8 6 6.4717 3.3539 -0.5819 9 6 7.8569 3.3304 0.0983 10 7 7.7297 2.5214 1.3193 11 6 8.7416 2.2364 2.1968 12 1 8.5871 1.5113 2.9821 13 6 9.9659 2.8796 2.0770 14 7 11.0677 2.2756 2.4690 15 14 10.0497 4.6022 1.3595 16 1 10.1005 4.5193 -0.1223 17 1 8.8465 5.3691 1.7713 18 1 11.2686 5.2877 1.8591 19 6 6.3310 2.0731 1.4458 20 7 4.2058 -0.0683 -0.0040 21 7 3.5411 -1.1663 0.0010 22 6 2.2220 -1.1904 0.0006 23 17 1.3809 -2.7091 -0.0001 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.7145 2.1422 0.0004 28 1 6.5698 3.2744 -1.6646 29 1 5.9253 4.2573 -0.3109 30 1 8.1628 4.3444 0.3557 31 1 8.5889 2.8787 -0.5711 32 1 11.0339 1.3558 2.7751 33 1 6.2919 1.0621 1.8516 34 1 5.7691 2.7579 2.0808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229063816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:35 Heat of formation + Delta-G solvation = 23.533917 kcal Electronic energy + Delta-G solvation = -19656.066395 eV Core-core repulsion = 16423.036758 eV Total energy + Delta-G solvation = -3233.029638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.52920 -40.45147 -38.46001 -37.86775 -35.66368 -34.69995 -32.73878 -31.36108 -29.99183 -29.19626 -26.09396 -25.77163 -24.03665 -22.63547 -22.11359 -19.82469 -19.59483 -18.82013 -18.23930 -17.38058 -17.02461 -16.62054 -15.73919 -15.48270 -15.35283 -15.05522 -14.54104 -14.34065 -14.15686 -14.10705 -13.78625 -13.53369 -13.23589 -13.06727 -12.97261 -12.72310 -12.39659 -12.28861 -12.04878 -11.91374 -11.64394 -11.17759 -10.92756 -10.78490 -10.65346 -10.18948 -9.22972 -8.75124 -5.48467 -0.49135 -0.35852 0.47237 1.40224 1.49678 1.58088 1.73820 2.16523 2.52714 2.78521 2.96783 3.20913 3.30526 3.45134 3.52559 3.58526 3.68089 3.95370 3.99649 4.21908 4.37215 4.47308 4.60636 4.62987 4.72126 4.75890 4.81614 4.88950 4.89657 5.09643 5.20204 5.49200 5.84919 6.03507 6.74533 7.31181 7.37402 8.02813 8.75882 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003712 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.883439 B = 7542.299246 C = 8076.208526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.118 4.118 4 C 0.259 3.741 5 O -0.277 6.277 6 C 0.087 3.913 7 H 0.091 0.909 8 C -0.106 4.106 9 C 0.108 3.892 10 N -0.625 5.625 11 C -0.334 4.334 12 H 0.041 0.959 13 C -0.065 4.065 14 N -0.943 5.943 15 Si 1.099 2.901 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.302 1.302 19 C 0.121 3.879 20 N -0.322 5.322 21 N -0.227 5.227 22 C 0.069 3.931 23 Cl 0.008 6.992 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.204 0.796 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.250 0.750 33 H 0.029 0.971 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.562 -1.168 -9.921 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.037 4.037 3 C -0.147 4.147 4 C 0.074 3.926 5 O -0.180 6.180 6 C 0.029 3.971 7 H 0.109 0.891 8 C -0.144 4.144 9 C -0.016 4.016 10 N -0.354 5.354 11 C -0.462 4.462 12 H 0.059 0.941 13 C -0.260 4.260 14 N -0.584 5.584 15 Si 0.925 3.075 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.231 1.231 19 C -0.005 4.005 20 N -0.178 5.178 21 N -0.071 5.071 22 C -0.107 4.107 23 Cl 0.036 6.964 24 H 0.129 0.871 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.221 0.779 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -25.179 -0.603 -10.185 27.168 hybrid contribution -1.379 -1.462 1.083 2.283 sum -26.558 -2.065 -9.102 28.150 Atomic orbital electron populations 1.21116 0.84296 1.06193 1.05761 1.21221 1.00898 0.89078 0.92539 1.21865 0.89243 1.02053 1.01552 1.21932 0.91716 0.87347 0.91644 1.86257 1.19739 1.25545 1.86477 1.23463 0.75953 1.00893 0.96750 0.89064 1.22687 0.93074 0.97041 1.01589 1.21872 0.97324 0.94675 0.87706 1.44699 1.05106 1.61325 1.24263 1.19886 0.92448 1.21835 1.12008 0.94132 1.27120 0.90035 1.08020 1.00854 1.70998 1.27813 1.13378 1.46253 0.83406 0.74556 0.72635 0.76904 1.18657 1.20071 1.23058 1.21909 0.85678 0.97386 0.95499 1.73136 1.30987 0.94938 1.18765 1.72585 1.06950 1.19053 1.08511 1.23617 0.91904 0.90546 1.04598 1.98402 1.73634 1.27923 1.96488 0.87115 0.89326 0.87252 0.77906 0.86751 0.87935 0.94597 0.94386 0.94087 0.95263 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.69 71.24 0.69 -0.05 16 2 C -0.03 -0.42 5.93 -19.62 -0.12 -0.54 16 3 C -0.12 -2.08 9.87 22.61 0.22 -1.86 16 4 C 0.26 7.11 7.57 84.86 0.64 7.75 16 5 O -0.28 -8.01 9.94 -90.45 -0.90 -8.91 16 6 C 0.09 2.98 3.24 31.98 0.10 3.09 16 7 H 0.09 3.35 7.18 -2.39 -0.02 3.33 16 8 C -0.11 -3.26 6.68 31.78 0.21 -3.05 16 9 C 0.11 4.56 4.94 86.73 0.43 4.99 16 10 N -0.63 -31.98 3.29 -691.97 -2.28 -34.25 16 11 C -0.33 -20.32 10.41 84.04 0.87 -19.45 16 12 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 13 C -0.07 -3.97 5.41 84.86 0.46 -3.51 16 14 N -0.94 -61.56 13.70 21.65 0.30 -61.26 16 15 Si 1.10 53.47 24.71 68.60 1.70 55.17 16 16 H -0.26 -11.33 6.70 99.48 0.67 -10.67 16 17 H -0.27 -12.41 6.84 99.48 0.68 -11.73 16 18 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 19 C 0.12 5.27 6.97 86.86 0.61 5.88 16 20 N -0.32 -10.74 9.91 -170.22 -1.69 -12.43 16 21 N -0.23 -7.10 11.48 -49.86 -0.57 -7.67 16 22 C 0.07 1.57 7.36 84.83 0.62 2.19 16 23 Cl 0.01 0.14 27.61 -2.72 -0.08 0.06 16 24 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.09 0.55 7.02 -2.39 -0.02 0.54 16 26 H 0.11 0.23 8.11 -2.39 -0.02 0.21 16 27 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.04 1.53 3.91 -2.39 -0.01 1.52 16 31 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 32 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 33 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.65 299.01 2.25 -74.40 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: 1.02 Total: -0.55 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.75 Total: -4.55 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.24 Total: -115.61 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.90 Total: -8.91 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.70 Total: 55.17 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -76.65 2.25 -74.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229063816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.937 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds