Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34707 * 117.00216 * 2 1 4 4 O 1.21472 * 119.99815 * 0.02562 * 3 2 1 5 5 C 1.47727 * 120.00061 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.14763 * 359.97438 * 5 3 2 7 7 C 1.37931 * 119.87776 * 180.02562 * 6 5 3 8 8 C 1.38364 * 120.16277 * 359.72992 * 7 6 5 9 9 C 1.50695 * 119.85307 * 180.27618 * 8 7 6 10 10 N 1.46505 * 109.47093 * 260.27025 * 9 8 7 11 11 C 1.46496 * 120.00360 * 270.00366 * 10 9 8 12 12 C 1.36943 * 119.99546 * 89.99899 * 10 9 8 13 13 H 1.08000 * 119.99911 * 22.36401 * 12 10 9 14 14 C 1.38809 * 119.99837 * 202.35803 * 12 10 9 15 15 N 1.31626 * 120.00138 * 11.86930 * 14 12 10 16 16 Si 1.86798 * 120.00147 * 191.86208 * 14 12 10 17 17 H 1.48497 * 109.47123 * 90.00290 * 16 14 12 18 18 H 1.48499 * 109.47269 * 210.00786 * 16 14 12 19 19 H 1.48499 * 109.47292 * 330.00413 * 16 14 12 20 20 C 1.38451 * 120.29140 * 0.54961 * 8 7 6 21 21 Cl 1.73598 * 119.94015 * 179.72491 * 20 8 7 22 22 C 1.38095 * 120.12357 * 359.44445 * 20 8 7 23 23 H 1.08997 * 109.47211 * 59.99771 * 1 2 3 24 24 H 1.09008 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46693 * 299.99485 * 1 2 3 26 26 H 1.08006 * 120.06023 * 0.04914 * 6 5 3 27 27 H 1.07994 * 119.91489 * 180.02562 * 7 6 5 28 28 H 1.08996 * 109.47452 * 20.26998 * 9 8 7 29 29 H 1.09006 * 109.47572 * 140.27467 * 9 8 7 30 30 H 1.08997 * 109.47185 * 92.65828 * 11 10 9 31 31 H 1.09004 * 109.47266 * 212.65666 * 11 10 9 32 32 H 1.09004 * 109.46827 * 332.65675 * 11 10 9 33 33 H 0.96998 * 120.00349 * 179.97438 * 15 14 12 34 34 H 1.07996 * 120.08240 * 180.25152 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3024 0.1083 -0.0006 7 6 5.6795 0.1869 -0.0006 8 6 6.3054 1.4209 -0.0062 9 6 7.8103 1.4986 -0.0125 10 7 8.2914 1.7604 1.3463 11 6 8.4665 3.1395 1.8085 12 6 8.5774 0.7158 2.1845 13 1 8.8020 -0.2584 1.7760 14 6 8.5786 0.9092 3.5590 15 7 8.0832 2.0173 4.0682 16 14 9.2831 -0.4032 4.6863 17 1 10.7304 -0.1480 4.8991 18 1 8.5765 -0.3657 5.9918 19 1 9.1023 -1.7393 4.0639 20 6 5.5551 2.5845 -0.0004 21 17 6.3499 4.1278 -0.0003 22 6 4.1757 2.5197 -0.0005 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 3.8155 -0.8558 -0.0010 27 1 6.2705 -0.7169 -0.0010 28 1 8.2215 0.5538 -0.3678 29 1 8.1298 2.3051 -0.6726 30 1 7.5566 3.4740 2.3066 31 1 9.3014 3.1851 2.5079 32 1 8.6720 3.7854 0.9548 33 1 8.0837 2.1523 5.0287 34 1 3.5911 3.4278 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232577521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -39.773163 kcal Electronic energy + Delta-G solvation = -19859.088248 eV Core-core repulsion = 16591.020659 eV Total energy + Delta-G solvation = -3268.067590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41105 -38.77253 -36.39368 -35.91476 -35.55477 -32.29067 -30.53199 -30.44628 -27.97570 -26.28374 -25.84963 -23.11963 -22.33224 -21.21577 -20.22741 -17.93629 -17.10416 -16.73144 -16.29775 -15.39706 -15.08024 -14.78698 -14.71319 -13.92644 -13.49932 -13.45016 -13.37555 -13.19772 -12.53037 -12.26076 -12.16347 -11.65367 -11.35842 -11.14453 -10.95584 -10.86744 -10.82090 -10.78083 -10.56631 -10.34515 -10.19233 -10.02432 -9.78757 -8.65340 -8.59487 -8.28343 -6.90791 -5.86768 -3.27199 0.92569 1.59306 2.48534 2.70501 2.90194 3.31794 3.37687 3.39305 4.00125 4.40608 4.82686 5.02102 5.09835 5.12528 5.24276 5.33572 5.40729 5.46011 5.58487 5.67563 5.92736 6.09380 6.18452 6.30163 6.44170 6.48420 6.60241 6.79808 6.91639 7.07343 7.35005 7.66059 7.76388 7.82746 8.24824 9.08369 9.69627 10.18763 11.16459 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.005538 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.177004 B = 5054.308470 C = 5984.670812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.516 3.484 4 O -0.515 6.515 5 C -0.149 4.149 6 C -0.058 4.058 7 C -0.115 4.115 8 C -0.036 4.036 9 C 0.170 3.830 10 N -0.578 5.578 11 C 0.161 3.839 12 C -0.255 4.255 13 H 0.074 0.926 14 C 0.005 3.995 15 N -0.894 5.894 16 Si 0.909 3.091 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.277 1.277 20 C -0.041 4.041 21 Cl -0.063 7.063 22 C -0.047 4.047 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.004 0.996 33 H 0.256 0.744 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 -2.690 -9.485 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.405 6.405 5 C -0.152 4.152 6 C -0.076 4.076 7 C -0.134 4.134 8 C -0.042 4.042 9 C 0.042 3.958 10 N -0.297 5.297 11 C 0.017 3.983 12 C -0.385 4.385 13 H 0.091 0.909 14 C -0.195 4.195 15 N -0.536 5.536 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.203 1.203 20 C -0.068 4.068 21 Cl -0.034 7.034 22 C -0.066 4.066 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.745 -2.172 -9.243 12.908 hybrid contribution -0.117 -0.455 1.011 1.115 sum -8.862 -2.627 -8.232 12.378 Atomic orbital electron populations 1.23237 0.76403 1.03510 1.02497 1.86550 1.23208 1.32907 1.84577 1.21200 0.89115 0.81175 0.72280 1.90802 1.66894 1.36043 1.46742 1.18635 0.88391 0.94465 1.13691 1.21401 0.94036 0.97412 0.94779 1.20926 0.93619 0.97442 1.01444 1.21460 1.00553 0.90934 0.91256 1.20228 0.85802 1.00414 0.89306 1.44307 1.71107 1.03731 1.10531 1.21018 1.00551 0.82332 0.94402 1.19336 1.40134 0.91756 0.87242 0.90858 1.25139 0.99543 0.97550 0.97230 1.70091 1.46140 1.25834 1.11583 0.86193 0.78695 0.81084 0.80220 1.21252 1.21617 1.20271 1.20459 0.91662 0.87316 1.07410 1.98344 1.80051 1.28141 1.96879 1.20913 0.92562 0.97201 0.95948 0.91995 0.88145 0.91923 0.84822 0.84772 0.92048 0.92281 0.94812 0.93560 0.97764 0.93378 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.84 9.82 -40.51 -0.40 -5.24 16 3 C 0.52 8.33 7.90 34.61 0.27 8.60 16 4 O -0.52 -9.26 16.14 -19.24 -0.31 -9.57 16 5 C -0.15 -2.50 5.87 -104.99 -0.62 -3.11 16 6 C -0.06 -0.90 9.62 -39.17 -0.38 -1.27 16 7 C -0.11 -1.93 9.65 -39.65 -0.38 -2.31 16 8 C -0.04 -0.67 5.47 -104.50 -0.57 -1.24 16 9 C 0.17 3.32 5.39 -5.19 -0.03 3.29 16 10 N -0.58 -13.86 2.91 -182.50 -0.53 -14.39 16 11 C 0.16 3.88 7.33 59.84 0.44 4.31 16 12 C -0.26 -6.63 9.67 -15.06 -0.15 -6.78 16 13 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 14 C 0.01 0.15 5.11 -17.43 -0.09 0.06 16 15 N -0.89 -25.38 10.62 55.49 0.59 -24.79 16 16 Si 0.91 21.10 29.57 -169.99 -5.03 16.07 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.04 -0.76 6.31 -39.56 -0.25 -1.01 16 21 Cl -0.06 -1.13 24.04 -51.86 -1.25 -2.37 16 22 C -0.05 -0.83 9.38 -39.13 -0.37 -1.19 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.13 1.74 7.61 -52.48 -0.40 1.34 16 27 H 0.13 2.03 8.03 -52.49 -0.42 1.61 16 28 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 29 H 0.06 1.08 7.07 -51.93 -0.37 0.71 16 30 H 0.03 0.88 6.97 -51.93 -0.36 0.52 16 31 H 0.05 1.21 7.10 -51.93 -0.37 0.84 16 32 H 0.00 0.08 6.74 -51.93 -0.35 -0.27 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.14 2.31 7.65 -52.49 -0.40 1.91 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -30.09 306.30 -7.25 -37.34 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -3.89 Total: -2.44 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.05 Total: 0.78 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.06 Total: -39.18 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.71 Total: -14.81 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.25 Total: -2.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.09 -7.25 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232577521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.437 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds