Wall clock time and date at job start Tue Mar 31 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39609 * 120.45134 * 238.10540 * 3 2 1 5 5 C 1.37673 * 120.19164 * 179.72277 * 4 3 2 6 6 C 1.39873 * 121.16428 * 0.52272 * 5 4 3 7 7 C 1.48207 * 119.53986 * 179.75477 * 6 5 4 8 8 C 1.39950 * 120.47019 * 309.70146 * 7 6 5 9 9 C 1.38078 * 118.42107 * 180.02562 * 8 7 6 10 10 C 1.39209 * 119.29252 * 0.02562 * 9 8 7 11 11 N 1.38845 * 119.55502 * 179.97438 * 10 9 8 12 12 N 1.32501 * 120.89780 * 359.72457 * 10 9 8 13 13 C 1.31966 * 121.71730 * 0.56850 * 12 10 9 14 14 F 1.35099 * 119.69464 * 179.71113 * 13 12 10 15 15 C 1.38671 * 120.91853 * 359.47452 * 6 5 4 16 16 C 1.40569 * 119.73009 * 0.25721 * 15 6 5 17 17 C 1.40857 * 120.55196 * 180.02562 * 16 15 6 18 18 H 1.07996 * 119.99844 * 155.85585 * 17 16 15 19 19 C 1.40228 * 119.99963 * 335.85819 * 17 16 15 20 20 N 1.30664 * 119.99615 * 341.82395 * 19 17 16 21 21 Si 1.86791 * 120.00028 * 161.82302 * 19 17 16 22 22 H 1.48502 * 109.47085 * 59.99748 * 21 19 17 23 23 H 1.48498 * 109.47150 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47263 * 299.99923 * 21 19 17 25 25 H 1.08005 * 119.90301 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.42028 * 180.28068 * 5 4 3 27 27 H 1.07998 * 120.78412 * 0.04631 * 8 7 6 28 28 H 1.08008 * 120.35198 * 179.97438 * 9 8 7 29 29 H 0.97008 * 119.99816 * 0.02562 * 11 10 9 30 30 H 0.97001 * 120.00519 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.13857 * 180.27571 * 15 6 5 32 32 H 0.97000 * 119.99431 * 185.04051 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 0.6368 1.0218 5 6 4.6520 0.6293 1.0196 6 6 5.3707 -0.0003 -0.0020 7 6 6.8523 0.0183 0.0285 8 6 7.5434 1.2213 0.2121 9 6 8.9237 1.1897 0.2331 10 6 9.5797 -0.0275 0.0717 11 7 10.9674 -0.0654 0.0913 12 7 8.8976 -1.1511 -0.0954 13 6 7.5784 -1.1637 -0.1271 14 9 6.9243 -2.3322 -0.3057 15 6 4.7162 -0.6464 -1.0398 16 6 3.3111 -0.6669 -1.0725 17 6 2.6285 -1.3186 -2.1182 18 1 1.6204 -1.6744 -1.9657 19 6 3.2582 -1.5053 -3.3571 20 7 4.3055 -0.7903 -3.6721 21 14 2.5998 -2.7763 -4.5572 22 1 1.1979 -2.4406 -4.9141 23 1 3.4357 -2.7781 -5.7845 24 1 2.6418 -4.1204 -3.9272 25 1 2.7408 1.1322 1.8190 26 1 5.1865 1.1214 1.8186 27 1 7.0097 2.1521 0.3348 28 1 9.4883 2.0999 0.3723 29 1 11.4733 0.7527 0.2173 30 1 11.4312 -0.9100 -0.0201 31 1 5.2837 -1.1322 -1.8198 32 1 4.6969 -0.8668 -4.5563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239823745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:36 Heat of formation + Delta-G solvation = 18.617756 kcal Electronic energy + Delta-G solvation = -20606.925131 eV Core-core repulsion = 17252.654857 eV Total energy + Delta-G solvation = -3354.270274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.90802 -41.03697 -39.35021 -37.05349 -36.08380 -35.33491 -33.63102 -32.04295 -31.64586 -28.97581 -27.52847 -24.86077 -24.40504 -22.85497 -22.51247 -19.47170 -19.15082 -18.82997 -18.65674 -17.36772 -16.98432 -16.67359 -16.55504 -16.27602 -15.62067 -15.02153 -14.72527 -14.57681 -14.49763 -14.38077 -14.32831 -13.97980 -13.51022 -13.41528 -13.26883 -13.09028 -12.80556 -12.59471 -12.17600 -11.72763 -11.68530 -11.38834 -11.13754 -10.72040 -10.68330 -9.48419 -9.42998 -8.84425 -8.48146 -6.51562 -0.06730 0.26391 0.66724 1.04398 1.33745 1.44058 1.52183 2.06329 2.11424 2.24866 2.37722 2.67447 2.81459 3.18918 3.61212 3.67547 3.82632 3.90541 4.23162 4.36437 4.48024 4.81574 4.83673 4.97305 5.02694 5.15623 5.23052 5.27646 5.50704 5.60789 5.82514 5.96602 6.08876 6.15773 6.31508 6.38429 6.47855 6.67166 6.80923 6.99913 7.23589 8.08319 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.005859 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.699881 B = 4778.104673 C = 6049.820454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.306 3.694 3 C -0.209 4.209 4 C -0.024 4.024 5 C -0.221 4.221 6 C -0.003 4.003 7 C -0.172 4.172 8 C 0.003 3.997 9 C -0.229 4.229 10 C 0.421 3.579 11 N -0.830 5.830 12 N -0.603 5.603 13 C 0.332 3.668 14 F -0.126 7.126 15 C -0.161 4.161 16 C 0.128 3.872 17 C -0.467 4.467 18 H 0.071 0.929 19 C 0.045 3.955 20 N -0.786 5.786 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.256 1.256 24 H -0.259 1.259 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.182 0.818 29 H 0.427 0.573 30 H 0.408 0.592 31 H 0.108 0.892 32 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.194 4.786 4.186 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.002 4.002 3 C -0.216 4.216 4 C -0.044 4.044 5 C -0.240 4.240 6 C -0.005 4.005 7 C -0.178 4.178 8 C -0.022 4.022 9 C -0.253 4.253 10 C 0.181 3.819 11 N -0.375 5.375 12 N -0.328 5.328 13 C 0.180 3.820 14 F -0.105 7.105 15 C -0.181 4.181 16 C 0.123 3.877 17 C -0.495 4.495 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.408 5.408 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.180 1.180 24 H -0.183 1.183 25 H 0.149 0.851 26 H 0.154 0.846 27 H 0.186 0.814 28 H 0.199 0.801 29 H 0.261 0.739 30 H 0.238 0.762 31 H 0.126 0.874 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.071 4.009 3.916 16.079 hybrid contribution -0.356 -0.460 -0.782 0.975 sum 14.714 3.550 3.134 15.458 Atomic orbital electron populations 1.80990 1.13204 1.14549 1.12480 1.26009 0.92943 0.90725 0.90535 1.17212 0.82952 1.16066 1.05326 1.20706 0.94097 0.94710 0.94934 1.20465 0.92719 1.09780 1.01031 1.18477 0.90112 0.97291 0.94575 1.19485 0.93893 0.93341 1.11118 1.21622 0.93691 0.96815 0.90109 1.21670 0.94485 0.98354 1.10787 1.18231 0.86863 0.87661 0.89149 1.42126 1.00513 1.14464 1.80418 1.66125 1.07526 1.32825 1.26348 1.17904 0.86256 0.81121 0.96679 1.91578 1.79461 1.47411 1.92075 1.21229 0.93221 1.04539 0.99102 1.18604 0.91970 0.87330 0.89796 1.19831 1.00942 1.31784 0.96911 0.91101 1.26753 0.93696 0.96515 1.00652 1.69700 1.17450 1.31638 1.22061 0.85347 0.79397 0.78712 0.77118 1.18774 1.17951 1.18302 0.85121 0.84567 0.81351 0.80057 0.73872 0.76200 0.87402 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.34 18.54 19.00 0.35 -25.99 16 2 C 0.31 14.81 14.28 88.33 1.26 16.07 16 3 C -0.21 -9.81 5.95 -19.53 -0.12 -9.93 16 4 C -0.02 -0.94 9.74 22.47 0.22 -0.72 16 5 C -0.22 -8.05 9.45 22.53 0.21 -7.84 16 6 C 0.00 -0.12 5.33 -20.13 -0.11 -0.22 16 7 C -0.17 -6.07 5.46 -19.89 -0.11 -6.18 16 8 C 0.00 0.07 9.62 22.65 0.22 0.29 16 9 C -0.23 -4.55 9.91 22.47 0.22 -4.33 16 10 C 0.42 9.98 7.74 133.11 1.03 11.01 16 11 N -0.83 -11.65 9.06 -55.43 -0.50 -12.15 16 12 N -0.60 -19.83 10.39 -193.46 -2.01 -21.84 16 13 C 0.33 12.60 8.27 85.00 0.70 13.31 16 14 F -0.13 -5.43 15.87 44.97 0.71 -4.71 16 15 C -0.16 -7.83 7.49 22.94 0.17 -7.66 16 16 C 0.13 6.56 5.74 -19.90 -0.11 6.44 16 17 C -0.47 -24.51 8.58 23.40 0.20 -24.31 16 18 H 0.07 3.80 7.37 -2.91 -0.02 3.78 16 19 C 0.04 2.15 5.14 85.35 0.44 2.59 16 20 N -0.79 -38.26 10.96 21.87 0.24 -38.02 16 21 Si 0.97 37.44 29.60 68.60 2.03 39.47 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.14 3.94 8.02 -2.91 -0.02 3.91 16 27 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.43 2.74 8.82 -92.70 -0.82 1.93 16 30 H 0.41 5.40 8.95 -92.71 -0.83 4.57 16 31 H 0.11 5.62 5.84 -2.91 -0.02 5.61 16 32 H 0.30 13.06 8.30 -92.71 -0.77 12.29 16 Total: -1.00 -64.69 299.89 4.63 -60.06 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.43 Total: 14.66 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.23 Total: -11.47 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -1.92 Total: -98.00 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.71 Total: -4.71 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -64.69 4.63 -60.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239823745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.681 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds