Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86801 * 119.99531 * 2 1 4 4 H 1.48506 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47033 * 299.99334 * 3 2 1 6 6 H 1.48497 * 109.47232 * 59.99553 * 3 2 1 7 7 C 1.40123 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.40623 * 119.99853 * 0.02562 * 7 2 1 10 10 N 1.34116 * 120.58882 * 351.76202 * 9 7 2 11 11 C 1.31498 * 119.86313 * 179.97438 * 10 9 7 12 12 C 1.39088 * 121.16376 * 359.97438 * 11 10 9 13 13 N 1.31832 * 121.23956 * 0.25738 * 12 11 10 14 14 C 1.33162 * 120.02251 * 359.49139 * 13 12 11 15 15 C 1.47315 * 120.55741 * 180.24962 * 14 13 12 16 16 C 1.39475 * 120.33716 * 130.19223 * 15 14 13 17 17 C 1.38403 * 120.16385 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.58664 * 180.02562 * 17 16 15 19 19 C 1.38365 * 120.83086 * 359.97438 * 17 16 15 20 20 C 1.39024 * 120.27437 * 359.97438 * 19 17 16 21 21 N 1.37793 * 133.31734 * 179.97438 * 20 19 17 22 22 H 0.96999 * 125.07386 * 0.02562 * 21 20 19 23 23 C 1.36622 * 109.84720 * 179.33811 * 21 20 19 24 24 C 1.34620 * 109.85650 * 0.59944 * 23 21 20 25 25 C 1.40615 * 119.54839 * 359.75213 * 20 19 17 26 26 H 0.97003 * 120.00700 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.41607 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.37967 * 179.97438 * 12 11 10 29 29 H 1.08003 * 119.91578 * 359.97438 * 16 15 14 30 30 H 1.08002 * 119.86522 * 180.02562 * 19 17 16 31 31 H 1.07998 * 125.07287 * 180.02562 * 23 21 20 32 32 H 1.08003 * 126.49746 * 179.46522 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3465 0.0006 5 1 1.8823 2.3964 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0078 -1.2135 0.0005 8 1 3.0877 -1.2134 0.0010 9 6 1.3047 -2.4313 0.0005 10 7 -0.0261 -2.4510 0.1655 11 6 -0.6693 -3.5980 0.1626 12 6 0.0061 -4.8016 -0.0098 13 7 1.3141 -4.8345 -0.1711 14 6 2.0129 -3.7010 -0.1812 15 6 3.4743 -3.7238 -0.3661 16 6 4.0774 -2.8974 -1.3140 17 6 5.4507 -2.9212 -1.4844 18 9 6.0227 -2.1155 -2.4056 19 6 6.2453 -3.7592 -0.7222 20 6 5.6720 -4.5932 0.2310 21 7 6.1901 -5.5125 1.1170 22 1 7.1311 -5.7291 1.2089 23 6 5.1821 -6.0624 1.8574 24 6 3.9999 -5.5418 1.4782 25 6 4.2786 -4.5759 0.4195 26 1 -0.4851 0.8400 -0.0004 27 1 -1.7410 -3.6055 0.2964 28 1 -0.5509 -5.7268 -0.0069 29 1 3.4712 -2.2372 -1.9167 30 1 7.3154 -3.7649 -0.8678 31 1 5.3130 -6.8104 2.6253 32 1 3.0293 -5.7920 1.8803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240027306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = 33.332825 kcal Electronic energy + Delta-G solvation = -21154.483668 eV Core-core repulsion = 17800.851488 eV Total energy + Delta-G solvation = -3353.632181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.79087 -42.04872 -40.49612 -37.50908 -36.02852 -34.24282 -33.13622 -31.60492 -30.12753 -29.25743 -27.94306 -25.18093 -23.90015 -22.87858 -22.58918 -21.32240 -19.57927 -19.11843 -18.08828 -17.79215 -17.01746 -16.77111 -16.51736 -16.40185 -15.97949 -15.68540 -15.13536 -14.82911 -14.58183 -14.44497 -14.17151 -13.61377 -13.51232 -13.32013 -13.07090 -12.85388 -12.67198 -12.16119 -12.04411 -11.87437 -11.65375 -11.49987 -11.05817 -10.58154 -9.62742 -9.34979 -9.10973 -8.57114 -8.35152 -6.65784 -0.12766 0.47282 0.70830 1.18780 1.36052 1.50324 1.52507 1.84761 2.13820 2.20504 2.69771 2.83309 3.40616 3.66724 3.78247 4.07416 4.09323 4.19247 4.25703 4.31567 4.42799 4.55547 4.66473 4.80280 4.94059 5.04598 5.07488 5.14102 5.20193 5.35707 5.60202 5.74766 5.82946 5.86531 6.09124 6.18416 6.42563 6.69206 6.82535 7.33743 7.89341 8.19893 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.007715 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.959891 B = 3628.435345 C = 4985.904330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.023 3.977 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.100 0.900 9 C 0.193 3.807 10 N -0.494 5.494 11 C 0.081 3.919 12 C -0.130 4.130 13 N -0.413 5.413 14 C -0.046 4.046 15 C 0.074 3.926 16 C -0.183 4.183 17 C 0.108 3.892 18 F -0.143 7.143 19 C -0.167 4.167 20 C 0.111 3.889 21 N -0.575 5.575 22 H 0.436 0.564 23 C 0.075 3.925 24 C -0.222 4.222 25 C -0.126 4.126 26 H 0.289 0.711 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.119 0.881 30 H 0.163 0.837 31 H 0.220 0.780 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.355 -5.543 2.855 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.201 4.201 3 Si 0.801 3.199 4 H -0.176 1.176 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.442 4.442 8 H 0.118 0.882 9 C 0.068 3.932 10 N -0.211 5.211 11 C -0.088 4.088 12 C -0.290 4.290 13 N -0.125 5.125 14 C -0.195 4.195 15 C 0.072 3.928 16 C -0.204 4.204 17 C 0.087 3.913 18 F -0.121 7.121 19 C -0.189 4.189 20 C 0.002 3.998 21 N -0.180 5.180 22 H 0.277 0.723 23 C -0.051 4.051 24 C -0.246 4.246 25 C -0.132 4.132 26 H 0.101 0.899 27 H 0.175 0.825 28 H 0.176 0.824 29 H 0.137 0.863 30 H 0.181 0.819 31 H 0.237 0.763 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.226 -5.447 2.874 12.804 hybrid contribution -0.174 0.749 -0.304 0.827 sum 11.052 -4.698 2.570 12.281 Atomic orbital electron populations 1.70117 1.09032 1.30351 1.26085 1.27126 0.95781 1.04793 0.92449 0.85135 0.79656 0.75577 0.79537 1.17591 1.18298 1.18313 1.20055 0.95592 0.89651 1.38856 0.88234 1.20775 0.89236 0.92932 0.90274 1.69512 1.07978 1.26056 1.17511 1.23920 1.01297 0.90024 0.93597 1.22935 0.91086 0.98848 1.16170 1.67859 1.08303 1.29472 1.06825 1.21409 0.93152 0.89872 1.15033 1.17526 0.89747 0.93006 0.92534 1.20896 0.93422 1.03839 1.02247 1.16946 0.90155 0.93228 0.90929 1.91443 1.84950 1.71563 1.64178 1.19824 1.00811 0.99516 0.98774 1.17699 0.91728 0.95131 0.95222 1.41575 1.10292 1.34743 1.31410 0.72306 1.22393 0.85404 0.99665 0.97664 1.21685 0.98693 1.02567 1.01687 1.19547 0.92601 1.00807 1.00227 0.89949 0.82509 0.82391 0.86284 0.81921 0.76340 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.16 11.54 21.85 0.25 -37.91 16 2 C 0.02 1.15 5.49 85.32 0.47 1.62 16 3 Si 0.98 37.05 29.56 68.60 2.03 39.08 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.41 -21.97 7.89 23.31 0.18 -21.79 16 8 H 0.10 5.12 5.81 -2.91 -0.02 5.11 16 9 C 0.19 10.80 6.67 41.54 0.28 11.08 16 10 N -0.49 -27.47 8.12 -184.10 -1.50 -28.97 16 11 C 0.08 3.90 11.17 84.95 0.95 4.85 16 12 C -0.13 -6.03 11.17 84.90 0.95 -5.08 16 13 N -0.41 -20.81 10.32 -178.89 -1.85 -22.65 16 14 C -0.05 -2.43 6.39 43.49 0.28 -2.15 16 15 C 0.07 3.45 5.20 -19.90 -0.10 3.35 16 16 C -0.18 -7.99 7.71 22.61 0.17 -7.82 16 17 C 0.11 3.97 7.27 22.34 0.16 4.13 16 18 F -0.14 -5.01 17.25 44.97 0.78 -4.24 16 19 C -0.17 -5.10 10.03 22.49 0.23 -4.88 16 20 C 0.11 3.50 7.26 38.98 0.28 3.79 16 21 N -0.57 -12.55 6.07 -187.54 -1.14 -13.69 16 22 H 0.44 5.45 8.96 -92.71 -0.83 4.62 16 23 C 0.08 1.72 11.83 83.12 0.98 2.70 16 24 C -0.22 -7.72 10.87 23.45 0.25 -7.47 16 25 C -0.13 -5.08 6.15 -19.99 -0.12 -5.21 16 26 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 27 H 0.16 6.33 8.06 -2.91 -0.02 6.31 16 28 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 29 H 0.12 5.54 7.37 -2.91 -0.02 5.52 16 30 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.22 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -69.93 290.00 3.90 -66.03 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.37 Total: 25.22 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.96 Total: -22.87 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -4.23 Total: -103.22 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -69.93 3.90 -66.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240027306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.361 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds