Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 119.99595 * 2 1 4 4 H 1.48500 * 109.46647 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46965 * 299.98947 * 3 2 1 6 6 H 1.48501 * 109.47403 * 59.99506 * 3 2 1 7 7 C 1.39879 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99750 * 163.02856 * 7 2 1 9 9 C 1.41374 * 120.00343 * 343.02956 * 7 2 1 10 10 C 1.40813 * 120.57102 * 155.71088 * 9 7 2 11 11 N 1.31512 * 120.70839 * 180.02562 * 10 9 7 12 12 C 1.32158 * 122.07322 * 0.02562 * 11 10 9 13 13 F 1.35101 * 119.46054 * 179.97438 * 12 11 10 14 14 C 1.40104 * 121.07644 * 359.97101 * 12 11 10 15 15 C 1.48324 * 120.41996 * 180.02562 * 14 12 11 16 16 C 1.40732 * 119.35147 * 130.02690 * 15 14 12 17 17 C 1.35348 * 121.70104 * 179.59953 * 16 15 14 18 18 C 1.41266 * 119.89622 * 0.62113 * 17 16 15 19 19 N 1.32056 * 134.42252 * 179.22754 * 18 17 16 20 20 N 1.39932 * 109.01093 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.01783 * 179.97438 * 20 19 18 22 22 C 1.33998 * 109.96535 * 0.02562 * 20 19 18 23 23 C 1.38362 * 107.87025 * 0.26039 * 22 20 19 24 24 C 1.37764 * 119.35333 * 309.99903 * 15 14 12 25 25 C 1.39039 * 119.15675 * 0.28052 * 14 12 11 26 26 H 0.96998 * 119.99963 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.64851 * 0.04902 * 10 9 7 28 28 H 1.07999 * 119.15221 * 359.97438 * 16 15 14 29 29 H 1.07998 * 120.04901 * 179.89399 * 17 16 15 30 30 H 1.07999 * 126.06480 * 180.02562 * 22 20 19 31 31 H 1.07999 * 120.32643 * 359.97438 * 24 15 14 32 32 H 1.07998 * 120.93860 * 179.74462 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8838 2.3966 1.2124 7 6 2.0081 -1.2114 0.0005 8 1 3.0529 -1.2319 -0.2725 9 6 1.3475 -2.4089 0.3584 10 6 1.8229 -3.6532 -0.0983 11 7 1.2102 -4.7688 0.2326 12 6 0.1332 -4.7774 0.9985 13 9 -0.4546 -5.9545 1.3052 14 6 -0.4088 -3.5858 1.4976 15 6 -1.6177 -3.6124 2.3565 16 6 -1.6129 -2.9107 3.5764 17 6 -2.6923 -2.8961 4.3928 18 6 -3.8574 -3.6089 4.0324 19 7 -5.0357 -3.8003 4.5971 20 7 -5.8132 -4.6137 3.7651 21 1 -6.7200 -4.9002 3.9564 22 6 -5.1197 -4.9392 2.6657 23 6 -3.8718 -4.3491 2.7606 24 6 -2.7235 -4.3231 1.9442 25 6 0.1980 -2.3775 1.1733 26 1 -0.4850 0.8400 -0.0004 27 1 2.7004 -3.6918 -0.7267 28 1 -0.7271 -2.3648 3.8658 29 1 -2.6587 -2.3500 5.3240 30 1 -5.4710 -5.5562 1.8519 31 1 -2.7104 -4.8554 1.0045 32 1 -0.1980 -1.4416 1.5388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240213070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = 53.345817 kcal Electronic energy + Delta-G solvation = -20680.615458 eV Core-core repulsion = 17327.851106 eV Total energy + Delta-G solvation = -3352.764352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.35450 -42.16288 -40.21337 -38.12363 -35.95990 -33.82794 -32.58866 -31.98638 -31.31653 -28.99355 -27.33070 -25.28859 -24.29294 -23.32141 -21.95961 -21.56599 -19.29187 -19.02943 -18.44018 -17.75561 -17.61936 -17.01462 -16.46641 -16.36440 -15.82150 -15.24342 -15.14683 -14.79359 -14.40346 -14.09624 -14.03884 -13.86063 -13.59065 -13.33040 -13.00558 -12.89992 -12.72537 -12.50476 -12.23187 -11.77604 -11.35421 -11.33071 -11.20370 -10.31101 -10.23088 -9.74810 -9.45599 -8.74603 -8.39599 -6.46144 -0.38587 0.35545 0.79805 1.03244 1.44415 1.47377 1.51953 1.60244 1.86591 2.19946 2.59401 2.85631 3.27641 3.32797 3.54266 3.72940 3.91099 4.18540 4.28366 4.33884 4.52973 4.61370 4.61802 4.70315 4.94484 5.08955 5.17119 5.21295 5.41276 5.44861 5.60253 5.77299 5.80307 5.86427 5.98686 6.29253 6.42019 6.58339 6.67098 6.69432 7.38010 8.19889 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.005151 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.613730 B = 5434.715768 C = 6510.234804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.096 0.904 9 C 0.036 3.964 10 C -0.006 4.006 11 N -0.503 5.503 12 C 0.136 3.864 13 F -0.143 7.143 14 C -0.080 4.080 15 C -0.092 4.092 16 C -0.057 4.057 17 C -0.119 4.119 18 C 0.089 3.911 19 N -0.342 5.342 20 N -0.409 5.409 21 H 0.462 0.538 22 C 0.120 3.880 23 C -0.234 4.234 24 C -0.023 4.023 25 C -0.118 4.118 26 H 0.295 0.705 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.145 0.855 30 H 0.239 0.761 31 H 0.123 0.877 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -2.076 4.347 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.114 0.886 9 C 0.032 3.968 10 C -0.168 4.168 11 N -0.216 5.216 12 C -0.017 4.017 13 F -0.123 7.123 14 C -0.084 4.084 15 C -0.095 4.095 16 C -0.080 4.080 17 C -0.139 4.139 18 C -0.064 4.064 19 N -0.172 5.172 20 N -0.111 5.111 21 H 0.311 0.689 22 C -0.040 4.040 23 C -0.244 4.244 24 C -0.043 4.043 25 C -0.144 4.144 26 H 0.106 0.894 27 H 0.172 0.828 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.256 0.744 31 H 0.141 0.859 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.481 -2.500 5.134 11.935 hybrid contribution 0.120 0.770 -0.493 0.922 sum -10.361 -1.730 4.641 11.484 Atomic orbital electron populations 1.69838 1.09207 1.31464 1.32854 1.26863 0.95462 1.04848 0.90845 0.85051 0.79655 0.75552 0.78959 1.17537 1.19134 1.18937 1.19922 0.98667 0.91124 1.39213 0.88556 1.18816 0.92756 0.94536 0.90714 1.22546 1.02852 0.86380 1.05004 1.66242 1.08169 1.34275 1.12871 1.17763 0.96381 0.80324 1.07271 1.91378 1.82486 1.46423 1.92007 1.19300 0.96740 0.92382 0.99958 1.18345 0.93230 1.02234 0.95653 1.20739 0.98298 0.96482 0.92457 1.19867 0.90033 1.02472 1.01574 1.21155 0.93621 0.97668 0.93921 1.77537 1.04336 1.18253 1.17062 1.46298 1.15838 1.35257 1.13664 0.68932 1.23414 0.90212 0.97839 0.92504 1.19803 0.96904 1.08957 0.98734 1.20544 0.90339 0.95665 0.97769 1.21707 0.97869 0.95741 0.99053 0.89373 0.82849 0.85408 0.83723 0.74443 0.85918 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.53 10.91 21.82 0.24 -38.29 16 2 C 0.04 1.69 5.18 85.23 0.44 2.14 16 3 Si 0.99 34.08 29.59 68.60 2.03 36.11 16 4 H -0.25 -8.43 7.11 99.48 0.71 -7.73 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 7 C -0.46 -22.24 9.08 23.44 0.21 -22.02 16 8 H 0.10 4.34 7.90 -2.91 -0.02 4.32 16 9 C 0.04 1.85 5.59 -21.22 -0.12 1.73 16 10 C -0.01 -0.31 10.96 85.37 0.94 0.62 16 11 N -0.50 -25.65 10.34 -193.68 -2.00 -27.65 16 12 C 0.14 6.74 8.27 85.10 0.70 7.44 16 13 F -0.14 -6.70 15.84 44.97 0.71 -5.99 16 14 C -0.08 -3.81 5.44 -19.95 -0.11 -3.92 16 15 C -0.09 -3.81 5.33 -20.10 -0.11 -3.92 16 16 C -0.06 -2.13 9.35 22.21 0.21 -1.92 16 17 C -0.12 -3.94 10.06 22.35 0.22 -3.71 16 18 C 0.09 2.93 7.49 42.20 0.32 3.24 16 19 N -0.34 -9.92 12.70 -48.62 -0.62 -10.54 16 20 N -0.41 -7.65 7.18 -56.26 -0.40 -8.05 16 21 H 0.46 4.19 8.96 -213.43 -1.91 2.27 16 22 C 0.12 2.31 12.08 84.39 1.02 3.33 16 23 C -0.23 -7.21 6.32 -20.25 -0.13 -7.34 16 24 C -0.02 -0.83 8.88 22.82 0.20 -0.63 16 25 C -0.12 -5.92 8.23 23.12 0.19 -5.73 16 26 H 0.30 12.63 8.30 -92.71 -0.77 11.86 16 27 H 0.15 6.77 8.06 -2.91 -0.02 6.74 16 28 H 0.13 4.55 8.00 -2.91 -0.02 4.53 16 29 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 30 H 0.24 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.12 4.36 7.71 -2.91 -0.02 4.34 16 32 H 0.13 6.68 6.20 -2.91 -0.02 6.67 16 Total: -1.00 -65.72 291.38 3.23 -62.49 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.72 Total: 22.60 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.99 Total: -30.68 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.79 Total: -84.54 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.71 Total: -5.99 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Total: -65.72 3.23 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240213070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.833 kcal (2) G-P(sol) polarization free energy of solvation -65.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds