Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86807 * 119.99676 * 2 1 4 4 H 1.48497 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46892 * 299.99271 * 3 2 1 6 6 H 1.48500 * 109.46843 * 59.99554 * 3 2 1 7 7 C 1.39890 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 162.91370 * 7 2 1 9 9 C 1.41385 * 119.99882 * 343.19243 * 7 2 1 10 10 C 1.40816 * 120.56808 * 155.64886 * 9 7 2 11 11 N 1.31508 * 120.72006 * 180.02562 * 10 9 7 12 12 C 1.32145 * 122.09397 * 0.02562 * 11 10 9 13 13 F 1.35091 * 119.46917 * 180.02562 * 12 11 10 14 14 C 1.40179 * 121.06228 * 359.97151 * 12 11 10 15 15 C 1.48141 * 120.42958 * 180.02562 * 14 12 11 16 16 C 1.38687 * 120.26028 * 245.00316 * 15 14 12 17 17 C 1.38639 * 120.39540 * 179.97438 * 16 15 14 18 18 C 1.37739 * 120.74955 * 0.02562 * 17 16 15 19 19 C 1.39254 * 120.12936 * 359.97438 * 18 17 16 20 20 N 1.37183 * 133.65951 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.96707 * 359.93063 * 20 19 18 22 22 N 1.40029 * 108.06184 * 179.34271 * 20 19 18 23 23 C 1.30202 * 109.72268 * 0.52118 * 22 20 19 24 24 C 1.40671 * 119.77207 * 359.73978 * 19 18 17 25 25 C 1.39129 * 119.13530 * 359.77122 * 14 12 11 26 26 H 0.97002 * 120.00349 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.63709 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.80005 * 0.02562 * 16 15 14 29 29 H 1.08001 * 119.62847 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.93894 * 180.02562 * 18 17 16 31 31 H 1.08000 * 125.66192 * 179.57727 * 23 22 20 32 32 H 1.08000 * 120.93469 * 180.25036 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8836 2.3965 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0524 -1.2321 -0.2743 9 6 1.3466 -2.4096 0.3551 10 6 1.8226 -3.6531 -0.1032 11 7 1.2093 -4.7693 0.2243 12 6 0.1312 -4.7799 0.9884 13 9 -0.4563 -5.9578 1.2924 14 6 -0.4119 -3.5887 1.4895 15 6 -1.6208 -3.6170 2.3454 16 6 -2.8026 -3.0404 1.9048 17 6 -3.9357 -3.0656 2.7032 18 6 -3.9092 -3.6613 3.9449 19 6 -2.7366 -4.2483 4.4136 20 7 -2.4022 -4.9014 5.5727 21 1 -2.9941 -5.0709 6.3222 22 7 -1.0608 -5.2923 5.4792 23 6 -0.5682 -4.9032 4.3385 24 6 -1.5805 -4.2359 3.6123 25 6 0.2022 -2.3801 1.1769 26 1 -0.4851 0.8400 -0.0004 27 1 2.7009 -3.6904 -0.7307 28 1 -2.8407 -2.5696 0.9336 29 1 -4.8494 -2.6124 2.3480 30 1 -4.7997 -3.6738 4.5559 31 1 0.4457 -5.0637 4.0030 32 1 -0.1892 -1.4455 1.5506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240314735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = 65.138584 kcal Electronic energy + Delta-G solvation = -21075.656703 eV Core-core repulsion = 17723.403724 eV Total energy + Delta-G solvation = -3352.252980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.55867 -41.10827 -38.41181 -36.72023 -34.22175 -33.01584 -30.92912 -30.27929 -29.37934 -28.07069 -25.56001 -23.36281 -22.44087 -21.66785 -21.37768 -20.61088 -17.93970 -16.92863 -16.58324 -16.39847 -15.96429 -15.07966 -14.99332 -14.74438 -14.52511 -14.22150 -13.89175 -13.35926 -13.19131 -12.44825 -12.32011 -12.03592 -11.84870 -11.61733 -11.50931 -11.40082 -11.24923 -11.02854 -10.74254 -10.67520 -10.20789 -9.93092 -9.53016 -8.64138 -8.35407 -8.28833 -7.81627 -7.47561 -7.04236 -4.66009 1.08832 1.79731 2.28386 2.62710 2.83236 2.94189 2.94470 2.97831 3.00569 3.72484 4.07703 4.33171 4.82800 4.96140 5.07590 5.19123 5.30460 5.37594 5.52366 5.55905 5.97849 6.03695 6.10264 6.24125 6.47367 6.62982 6.64815 6.69968 6.87369 6.92495 6.95934 7.13949 7.41802 7.50057 7.59109 7.72821 7.81182 8.17756 8.43540 8.45290 9.18543 9.86235 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.005778 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.674960 B = 4845.132939 C = 5520.309281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.439 4.439 8 H 0.089 0.911 9 C 0.055 3.945 10 C 0.012 3.988 11 N -0.488 5.488 12 C 0.167 3.833 13 F -0.144 7.144 14 C -0.108 4.108 15 C 0.069 3.931 16 C -0.148 4.148 17 C -0.062 4.062 18 C -0.161 4.161 19 C 0.126 3.874 20 N -0.516 5.516 21 H 0.436 0.564 22 N -0.266 5.266 23 C 0.095 3.905 24 C -0.163 4.163 25 C -0.092 4.092 26 H 0.287 0.713 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.188 0.812 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 -0.062 5.664 8.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.149 4.149 11 N -0.200 5.200 12 C 0.013 3.987 13 F -0.123 7.123 14 C -0.112 4.112 15 C 0.065 3.935 16 C -0.167 4.167 17 C -0.082 4.082 18 C -0.184 4.184 19 C 0.010 3.990 20 N -0.231 5.231 21 H 0.280 0.720 22 N -0.080 5.080 23 C -0.101 4.101 24 C -0.170 4.170 25 C -0.117 4.117 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.205 0.795 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.572 -1.364 6.505 8.673 hybrid contribution -0.654 1.659 -0.091 1.786 sum -6.225 0.295 6.413 8.943 Atomic orbital electron populations 1.69766 1.07730 1.30040 1.33173 1.26005 0.94866 1.01859 0.91931 0.86137 0.81020 0.80187 0.78840 1.18062 1.19693 1.19472 1.19600 0.98133 0.90451 1.38615 0.89316 1.18480 0.92323 0.93858 0.90337 1.22324 1.02014 0.86566 1.04044 1.66291 1.07556 1.33676 1.12496 1.17513 0.95360 0.79604 1.06203 1.91420 1.82571 1.46433 1.91926 1.19117 0.96620 0.93712 1.01776 1.18290 0.92966 0.92086 0.90172 1.21078 0.91692 1.02833 1.01104 1.20864 0.98130 0.96477 0.92768 1.19920 0.95238 1.05187 0.98029 1.18791 0.95729 0.96576 0.87895 1.45969 1.09567 1.51428 1.16154 0.71976 1.76655 0.90892 1.19996 1.20475 1.23862 1.00077 0.95662 0.90510 1.18852 0.93669 1.07742 0.96761 1.21717 0.97271 0.95240 0.97480 0.90221 0.84383 0.85059 0.85422 0.86198 0.79497 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.89 10.94 55.54 0.61 -17.28 16 2 C 0.07 1.63 5.18 -17.35 -0.09 1.54 16 3 Si 0.91 16.70 29.59 -169.99 -5.03 11.67 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.44 -10.25 9.07 -37.77 -0.34 -10.60 16 8 H 0.09 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.05 1.32 5.58 -106.71 -0.60 0.72 16 10 C 0.01 0.28 10.96 -16.72 -0.18 0.10 16 11 N -0.49 -11.83 10.33 -12.56 -0.13 -11.96 16 12 C 0.17 3.95 8.38 -16.69 -0.14 3.81 16 13 F -0.14 -3.33 16.69 2.25 0.04 -3.29 16 14 C -0.11 -2.43 5.20 -104.77 -0.54 -2.98 16 15 C 0.07 1.36 5.04 -104.60 -0.53 0.84 16 16 C -0.15 -2.60 9.71 -39.27 -0.38 -2.98 16 17 C -0.06 -0.88 10.00 -39.62 -0.40 -1.27 16 18 C -0.16 -2.24 10.06 -39.39 -0.40 -2.64 16 19 C 0.13 2.05 7.32 -84.18 -0.62 1.43 16 20 N -0.52 -7.55 7.44 32.35 0.24 -7.31 16 21 H 0.44 4.67 8.96 -182.65 -1.64 3.03 16 22 N -0.27 -4.52 12.57 30.83 0.39 -4.13 16 23 C 0.09 1.72 11.85 -17.07 -0.20 1.51 16 24 C -0.16 -3.05 5.82 -106.73 -0.62 -3.68 16 25 C -0.09 -2.16 8.50 -38.24 -0.33 -2.49 16 26 H 0.29 5.92 8.30 -40.82 -0.34 5.59 16 27 H 0.14 2.91 8.06 -52.49 -0.42 2.48 16 28 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.19 3.25 8.06 -52.49 -0.42 2.82 16 32 H 0.14 3.33 6.23 -52.49 -0.33 3.01 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -27.24 293.26 -8.46 -35.70 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.63 Total: 8.88 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -5.36 Total: -16.68 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 1.11 Total: -40.69 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.24 -8.46 -35.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240314735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.835 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds