Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86807 * 119.99676 * 2 1 4 4 H 1.48497 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46892 * 299.99271 * 3 2 1 6 6 H 1.48500 * 109.46843 * 59.99554 * 3 2 1 7 7 C 1.39890 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 162.91370 * 7 2 1 9 9 C 1.41385 * 119.99882 * 343.19243 * 7 2 1 10 10 C 1.40816 * 120.56808 * 155.64886 * 9 7 2 11 11 N 1.31508 * 120.72006 * 180.02562 * 10 9 7 12 12 C 1.32145 * 122.09397 * 0.02562 * 11 10 9 13 13 F 1.35091 * 119.46917 * 180.02562 * 12 11 10 14 14 C 1.40179 * 121.06228 * 359.97151 * 12 11 10 15 15 C 1.48141 * 120.42958 * 180.02562 * 14 12 11 16 16 C 1.38687 * 120.26028 * 245.00316 * 15 14 12 17 17 C 1.38639 * 120.39540 * 179.97438 * 16 15 14 18 18 C 1.37739 * 120.74955 * 0.02562 * 17 16 15 19 19 C 1.39254 * 120.12936 * 359.97438 * 18 17 16 20 20 N 1.37183 * 133.65951 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.96707 * 359.93063 * 20 19 18 22 22 N 1.40029 * 108.06184 * 179.34271 * 20 19 18 23 23 C 1.30202 * 109.72268 * 0.52118 * 22 20 19 24 24 C 1.40671 * 119.77207 * 359.73978 * 19 18 17 25 25 C 1.39129 * 119.13530 * 359.77122 * 14 12 11 26 26 H 0.97002 * 120.00349 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.63709 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.80005 * 0.02562 * 16 15 14 29 29 H 1.08001 * 119.62847 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.93894 * 180.02562 * 18 17 16 31 31 H 1.08000 * 125.66192 * 179.57727 * 23 22 20 32 32 H 1.08000 * 120.93469 * 180.25036 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8836 2.3965 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0524 -1.2321 -0.2743 9 6 1.3466 -2.4096 0.3551 10 6 1.8226 -3.6531 -0.1032 11 7 1.2093 -4.7693 0.2243 12 6 0.1312 -4.7799 0.9884 13 9 -0.4563 -5.9578 1.2924 14 6 -0.4119 -3.5887 1.4895 15 6 -1.6208 -3.6170 2.3454 16 6 -2.8026 -3.0404 1.9048 17 6 -3.9357 -3.0656 2.7032 18 6 -3.9092 -3.6613 3.9449 19 6 -2.7366 -4.2483 4.4136 20 7 -2.4022 -4.9014 5.5727 21 1 -2.9941 -5.0709 6.3222 22 7 -1.0608 -5.2923 5.4792 23 6 -0.5682 -4.9032 4.3385 24 6 -1.5805 -4.2359 3.6123 25 6 0.2022 -2.3801 1.1769 26 1 -0.4851 0.8400 -0.0004 27 1 2.7009 -3.6904 -0.7307 28 1 -2.8407 -2.5696 0.9336 29 1 -4.8494 -2.6124 2.3480 30 1 -4.7997 -3.6738 4.5559 31 1 0.4457 -5.0637 4.0030 32 1 -0.1892 -1.4455 1.5506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240314735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = 50.157964 kcal Electronic energy + Delta-G solvation = -21076.306312 eV Core-core repulsion = 17723.403724 eV Total energy + Delta-G solvation = -3352.902588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.37923 -42.39915 -40.16077 -38.03988 -35.98030 -34.44282 -32.49094 -31.93504 -30.68111 -29.51218 -27.35338 -24.86955 -23.90882 -23.28678 -22.76394 -22.07147 -19.53305 -18.54690 -18.23528 -17.76559 -17.66032 -16.72608 -16.58405 -16.13610 -15.83314 -15.61749 -15.35692 -14.95113 -14.53772 -14.21356 -13.99914 -13.76676 -13.62210 -13.06411 -12.92240 -12.87668 -12.72221 -12.45648 -12.18057 -12.01441 -11.74867 -11.31100 -11.21483 -10.35672 -10.16195 -9.64593 -9.49876 -8.88987 -8.71176 -6.47399 -0.23653 0.42699 0.62893 0.85346 1.44010 1.48982 1.51604 1.59280 1.78079 2.19081 2.57575 2.79557 3.29482 3.44631 3.55477 3.69283 3.97610 4.08164 4.18501 4.27575 4.41641 4.66041 4.69670 4.83863 4.93278 4.96766 5.12729 5.17469 5.32377 5.47064 5.56335 5.65989 5.75792 5.86747 5.95544 6.36036 6.38783 6.58669 6.63765 6.67292 7.35357 8.18391 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.005778 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.674960 B = 4845.132939 C = 5520.309281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.097 0.903 9 C 0.037 3.963 10 C -0.003 4.003 11 N -0.502 5.502 12 C 0.142 3.858 13 F -0.146 7.146 14 C -0.092 4.092 15 C 0.027 3.973 16 C -0.152 4.152 17 C -0.057 4.057 18 C -0.139 4.139 19 C 0.121 3.879 20 N -0.496 5.496 21 H 0.455 0.545 22 N -0.269 5.269 23 C 0.073 3.927 24 C -0.186 4.186 25 C -0.110 4.110 26 H 0.297 0.703 27 H 0.156 0.844 28 H 0.122 0.878 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 1.349 6.719 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.487 4.487 8 H 0.115 0.885 9 C 0.032 3.968 10 C -0.164 4.164 11 N -0.214 5.214 12 C -0.011 4.011 13 F -0.125 7.125 14 C -0.096 4.096 15 C 0.024 3.976 16 C -0.171 4.171 17 C -0.077 4.077 18 C -0.160 4.160 19 C 0.003 3.997 20 N -0.214 5.214 21 H 0.303 0.697 22 N -0.084 5.084 23 C -0.122 4.122 24 C -0.193 4.193 25 C -0.136 4.136 26 H 0.108 0.892 27 H 0.173 0.827 28 H 0.140 0.860 29 H 0.187 0.813 30 H 0.185 0.815 31 H 0.197 0.803 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.417 0.017 7.579 10.605 hybrid contribution -0.205 1.232 -0.379 1.305 sum -7.622 1.249 7.199 10.559 Atomic orbital electron populations 1.69802 1.09065 1.31571 1.32386 1.26840 0.95556 1.04759 0.90915 0.85058 0.79637 0.75627 0.78965 1.17711 1.18941 1.19071 1.19926 0.98675 0.91053 1.39048 0.88546 1.18793 0.92808 0.94561 0.90648 1.22581 1.02759 0.86327 1.04759 1.66251 1.08042 1.34217 1.12917 1.17710 0.95999 0.80103 1.07318 1.91392 1.82618 1.46491 1.92044 1.19261 0.97001 0.92645 1.00647 1.18293 0.92900 0.95387 0.91042 1.21210 0.92301 1.02256 1.01372 1.21269 0.98223 0.95897 0.92361 1.20459 0.95624 1.02140 0.97820 1.19069 0.95821 0.96933 0.87838 1.45946 1.08902 1.50226 1.16375 0.69667 1.76577 0.92150 1.19788 1.19882 1.23822 1.00234 0.96929 0.91224 1.18987 0.95057 1.08321 0.96963 1.21659 0.97942 0.95367 0.98587 0.89207 0.82727 0.85972 0.81257 0.81513 0.80253 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.85 10.94 21.82 0.24 -36.61 16 2 C 0.04 1.66 5.18 85.24 0.44 2.10 16 3 Si 0.99 33.43 29.59 68.60 2.03 35.46 16 4 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 6 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.46 -21.74 9.07 23.45 0.21 -21.53 16 8 H 0.10 4.28 7.90 -2.91 -0.02 4.26 16 9 C 0.04 1.83 5.58 -21.22 -0.12 1.71 16 10 C 0.00 -0.13 10.96 85.37 0.94 0.81 16 11 N -0.50 -25.35 10.33 -193.64 -2.00 -27.35 16 12 C 0.14 7.01 8.38 85.12 0.71 7.72 16 13 F -0.15 -7.02 16.69 44.97 0.75 -6.27 16 14 C -0.09 -4.30 5.20 -19.96 -0.10 -4.40 16 15 C 0.03 1.11 5.04 -19.85 -0.10 1.01 16 16 C -0.15 -5.25 9.71 22.47 0.22 -5.03 16 17 C -0.06 -1.43 10.00 22.25 0.22 -1.21 16 18 C -0.14 -3.26 10.06 22.40 0.23 -3.03 16 19 C 0.12 3.62 7.32 39.14 0.29 3.91 16 20 N -0.50 -13.38 7.44 -51.56 -0.38 -13.77 16 21 H 0.46 8.25 8.96 -213.37 -1.91 6.34 16 22 N -0.27 -8.96 12.57 -56.37 -0.71 -9.67 16 23 C 0.07 2.71 11.85 85.70 1.02 3.72 16 24 C -0.19 -6.98 5.82 -21.23 -0.12 -7.10 16 25 C -0.11 -5.42 8.50 23.14 0.20 -5.22 16 26 H 0.30 12.12 8.30 -92.71 -0.77 11.35 16 27 H 0.16 6.71 8.06 -2.91 -0.02 6.69 16 28 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.18 6.68 8.06 -2.91 -0.02 6.66 16 32 H 0.13 6.51 6.23 -2.91 -0.02 6.49 16 Total: -1.00 -60.44 293.26 3.23 -57.21 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.72 Total: 27.54 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.02 Total: -26.54 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.85 Total: -87.40 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.75 Total: -6.27 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.46 kcal Total: -60.44 3.23 -57.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240314735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.365 kcal (2) G-P(sol) polarization free energy of solvation -60.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds