Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48502 * 109.47066 * 89.99829 * 3 2 1 5 5 H 1.48501 * 109.46710 * 209.99510 * 3 2 1 6 6 H 1.48501 * 109.47262 * 329.99478 * 3 2 1 7 7 C 1.39959 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99829 * 17.82978 * 7 2 1 9 9 C 1.40930 * 119.99982 * 197.83883 * 7 2 1 10 10 C 1.40951 * 120.13532 * 28.84261 * 9 7 2 11 11 C 1.36175 * 119.90546 * 179.97438 * 10 9 7 12 12 C 1.40051 * 120.17982 * 359.97438 * 11 10 9 13 13 C 1.47959 * 119.86585 * 180.02562 * 12 11 10 14 14 C 1.41427 * 120.11779 * 359.97438 * 13 12 11 15 15 C 1.35826 * 119.51232 * 179.97438 * 14 13 12 16 16 C 1.40848 * 119.60872 * 0.02562 * 15 14 13 17 17 N 1.32828 * 132.58347 * 179.97438 * 16 15 14 18 18 C 1.32562 * 109.70351 * 179.97438 * 17 16 15 19 19 N 1.31209 * 109.64156 * 0.02562 * 18 17 16 20 20 N 1.36652 * 120.05281 * 0.02562 * 16 15 14 21 21 C 1.35716 * 120.77986 * 359.73910 * 20 16 15 22 22 C 1.39818 * 120.27137 * 359.97438 * 12 11 10 23 23 C 1.36545 * 120.09510 * 359.79163 * 22 12 11 24 24 F 1.35099 * 120.09323 * 180.24819 * 23 22 12 25 25 H 0.97000 * 119.99975 * 175.43716 * 1 2 3 26 26 H 1.08001 * 120.04772 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.91448 * 180.02562 * 11 10 9 28 28 H 1.08007 * 120.24550 * 359.96135 * 14 13 12 29 29 H 1.07996 * 120.19563 * 180.02562 * 15 14 13 30 30 H 1.07997 * 125.17972 * 180.02562 * 18 17 16 31 31 H 1.07998 * 119.86416 * 180.28235 * 21 20 16 32 32 H 1.07995 * 119.95162 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4899 2.0465 1.4001 5 1 3.5401 1.4401 -0.7000 6 1 1.4400 2.6527 -0.7001 7 6 2.0083 -1.2121 0.0005 8 1 1.5072 -2.1250 -0.2854 9 6 3.3668 -1.2413 0.3744 10 6 3.8706 -0.2907 1.2851 11 6 5.1840 -0.3235 1.6435 12 6 6.0351 -1.2995 1.1102 13 6 7.4608 -1.3291 1.5049 14 6 7.9642 -0.3740 2.4184 15 6 9.2749 -0.4129 2.7726 16 6 10.1145 -1.4026 2.2256 17 7 11.4046 -1.6756 2.3854 18 6 11.7351 -2.7231 1.6433 19 7 10.6806 -3.1513 0.9903 20 7 9.6105 -2.3166 1.3435 21 6 8.3013 -2.2889 0.9870 22 6 5.5430 -2.2467 0.2071 23 6 4.2269 -2.2270 -0.1563 24 9 3.7503 -3.1453 -1.0250 25 1 -0.4850 -0.8374 -0.0668 26 1 3.2159 0.4621 1.6986 27 1 5.5701 0.4045 2.3416 28 1 7.3113 0.3809 2.8311 29 1 9.6709 0.3108 3.4696 30 1 12.7219 -3.1580 1.5851 31 1 7.9176 -3.0213 0.2922 32 1 6.2038 -2.9972 -0.2006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240354785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = 70.613905 kcal Electronic energy + Delta-G solvation = -20475.225564 eV Core-core repulsion = 17123.210012 eV Total energy + Delta-G solvation = -3352.015552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.41121 -43.59392 -40.15212 -38.41031 -35.90733 -34.58655 -33.38082 -31.78240 -31.01283 -30.33713 -26.90468 -25.23114 -24.24249 -23.30827 -22.93328 -22.12297 -20.33735 -18.92748 -18.35618 -17.91624 -17.15130 -16.83057 -16.78805 -16.29492 -16.10327 -15.89533 -15.67030 -15.03252 -14.96603 -14.50309 -13.95063 -13.77781 -13.72253 -13.57376 -12.93599 -12.81035 -12.60132 -12.24864 -12.15197 -11.97817 -11.78768 -11.45831 -11.18398 -11.05934 -10.65635 -9.81439 -9.61586 -9.47041 -8.90020 -6.67599 -0.48326 -0.14359 0.64668 0.71050 1.12826 1.38407 1.56035 1.74539 1.81276 2.14949 2.33007 2.67109 3.02647 3.23625 3.29014 3.53194 3.73325 3.92235 3.98929 4.12499 4.16148 4.39575 4.51349 4.64943 4.81788 4.86633 5.08472 5.20098 5.25598 5.33013 5.36961 5.42030 5.43764 5.67097 5.72463 5.81109 5.84283 6.15665 6.40674 6.59170 6.92882 7.81218 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.004255 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.233290 B = 6579.110148 C = 7294.208156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.011 3.989 3 Si 1.101 2.899 4 H -0.232 1.232 5 H -0.256 1.256 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.044 0.956 9 C 0.060 3.940 10 C -0.234 4.234 11 C -0.040 4.040 12 C -0.153 4.153 13 C -0.019 4.019 14 C -0.047 4.047 15 C -0.099 4.099 16 C 0.248 3.752 17 N -0.575 5.575 18 C 0.229 3.771 19 N -0.385 5.385 20 N -0.281 5.281 21 C 0.058 3.942 22 C -0.088 4.088 23 C -0.049 4.049 24 F -0.172 7.172 25 H 0.281 0.719 26 H 0.128 0.872 27 H 0.163 0.837 28 H 0.190 0.810 29 H 0.188 0.812 30 H 0.259 0.741 31 H 0.169 0.831 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.668 3.561 5.864 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.205 4.205 3 Si 0.919 3.081 4 H -0.156 1.156 5 H -0.180 1.180 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.252 4.252 11 C -0.058 4.058 12 C -0.155 4.155 13 C -0.023 4.023 14 C -0.072 4.072 15 C -0.120 4.120 16 C -0.003 4.003 17 N -0.306 5.306 18 C -0.070 4.070 19 N -0.217 5.217 20 N -0.054 5.054 21 C -0.070 4.070 22 C -0.107 4.107 23 C -0.069 4.069 24 F -0.151 7.151 25 H 0.092 0.908 26 H 0.146 0.854 27 H 0.181 0.819 28 H 0.207 0.793 29 H 0.205 0.795 30 H 0.275 0.725 31 H 0.186 0.814 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.730 4.569 5.590 16.404 hybrid contribution -0.931 -2.926 -0.861 3.189 sum 13.799 1.642 4.728 14.679 Atomic orbital electron populations 1.70609 1.08745 1.32923 1.31929 1.28714 0.95670 1.07117 0.88983 0.83333 0.74878 0.69426 0.80464 1.15625 1.17966 1.20952 1.20660 0.96388 0.96682 1.41656 0.93768 1.18095 0.92651 0.92198 0.91429 1.20895 0.97459 1.03861 1.03029 1.20939 0.91659 0.96234 0.96974 1.17637 0.90990 1.01261 1.05652 1.18508 0.92018 0.94580 0.97243 1.21737 0.94903 0.97200 0.93339 1.20594 0.91623 0.97438 1.02312 1.22456 0.91260 0.93810 0.92806 1.70868 1.09840 1.20192 1.29742 1.26842 0.99820 0.90830 0.89552 1.78439 0.94627 1.18661 1.30016 1.47491 1.08294 1.20826 1.28787 1.21866 0.79396 1.02592 1.03187 1.20658 0.92763 0.99316 0.97958 1.17747 0.93476 0.96119 0.99524 1.91281 1.89577 1.65572 1.68694 0.90837 0.85427 0.81948 0.79326 0.79452 0.72515 0.81386 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.27 13.66 21.83 0.30 -41.97 16 2 C 0.01 0.54 5.41 85.26 0.46 1.00 16 3 Si 1.10 41.83 24.90 68.60 1.71 43.54 16 4 H -0.23 -7.36 6.43 99.48 0.64 -6.72 16 5 H -0.26 -9.47 7.04 99.48 0.70 -8.77 16 6 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.53 -27.61 9.11 23.35 0.21 -27.40 16 8 H 0.04 2.57 7.94 -2.91 -0.02 2.54 16 9 C 0.06 2.80 5.14 -21.23 -0.11 2.69 16 10 C -0.23 -8.95 7.20 22.45 0.16 -8.79 16 11 C -0.04 -1.21 9.36 22.23 0.21 -1.00 16 12 C -0.15 -4.76 5.90 -19.88 -0.12 -4.88 16 13 C -0.02 -0.49 5.88 -20.04 -0.12 -0.61 16 14 C -0.05 -0.88 9.42 22.50 0.21 -0.67 16 15 C -0.10 -1.94 10.08 22.35 0.23 -1.71 16 16 C 0.25 6.77 7.87 134.14 1.06 7.83 16 17 N -0.58 -16.05 11.25 -198.02 -2.23 -18.27 16 18 C 0.23 5.73 12.98 180.83 2.35 8.08 16 19 N -0.39 -11.57 12.78 -61.37 -0.78 -12.35 16 20 N -0.28 -8.37 3.88 -191.09 -0.74 -9.12 16 21 C 0.06 1.61 10.65 83.96 0.89 2.51 16 22 C -0.09 -3.21 9.32 22.26 0.21 -3.01 16 23 C -0.05 -2.20 7.26 22.60 0.16 -2.04 16 24 F -0.17 -8.30 16.74 44.97 0.75 -7.55 16 25 H 0.28 14.51 8.73 -92.71 -0.81 13.71 16 26 H 0.13 4.64 4.39 -2.91 -0.01 4.63 16 27 H 0.16 3.17 6.18 -2.91 -0.02 3.15 16 28 H 0.19 2.14 6.23 -2.91 -0.02 2.12 16 29 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.26 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.17 4.53 6.12 -2.91 -0.02 4.51 16 32 H 0.13 4.12 6.16 -2.91 -0.02 4.10 16 Total: -1.00 -64.11 281.24 5.89 -58.22 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.08 Total: 15.51 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 5.81 Total: -28.00 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.46 Total: -81.72 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.75 Total: -7.55 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.71 Total: 43.54 kcal Total: -64.11 5.89 -58.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240354785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.831 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds