Wall clock time and date at job start Tue Mar 31 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 119.99769 * 2 1 4 4 H 1.48497 * 109.47323 * 240.00150 * 3 2 1 5 5 H 1.48505 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46630 * 120.00275 * 3 2 1 7 7 C 1.39998 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00321 * 164.05107 * 7 2 1 9 9 C 1.40810 * 120.00043 * 344.05138 * 7 2 1 10 10 C 1.40794 * 120.30132 * 333.08997 * 9 7 2 11 11 C 1.36330 * 120.02174 * 179.97438 * 10 9 7 12 12 C 1.39244 * 120.65413 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.69114 * 180.02562 * 12 11 10 14 14 C 1.38339 * 120.61765 * 359.71930 * 12 11 10 15 15 C 1.39099 * 119.95439 * 0.56473 * 14 12 11 16 16 C 1.47851 * 120.32182 * 179.72215 * 15 14 12 17 17 C 1.41475 * 120.12454 * 129.71839 * 16 15 14 18 18 C 1.35809 * 119.50343 * 179.97438 * 17 16 15 19 19 C 1.40858 * 119.62222 * 0.02562 * 18 17 16 20 20 N 1.32829 * 132.58064 * 179.97438 * 19 18 17 21 21 C 1.32554 * 109.70695 * 180.02562 * 20 19 18 22 22 N 1.31208 * 109.64013 * 0.24613 * 21 20 19 23 23 N 1.36651 * 120.05983 * 359.97438 * 19 18 17 24 24 C 1.35714 * 120.78305 * 359.97438 * 23 19 18 25 25 H 0.97000 * 120.00230 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99022 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.67251 * 180.02562 * 11 10 9 28 28 H 1.07994 * 120.02474 * 180.27635 * 14 12 11 29 29 H 1.07997 * 120.24714 * 359.95625 * 17 16 15 30 30 H 1.07998 * 120.18600 * 179.97438 * 18 17 16 31 31 H 1.08001 * 125.17672 * 179.97438 * 21 20 19 32 32 H 1.07999 * 119.86030 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0083 -1.2124 -0.0005 8 1 3.0572 -1.2303 -0.2576 9 6 1.3450 -2.4086 0.3340 10 6 0.2206 -2.3844 1.1810 11 6 -0.4177 -3.5458 1.5007 12 6 0.0305 -4.7641 0.9969 13 9 -0.6170 -5.9033 1.3260 14 6 1.1288 -4.8182 0.1575 15 6 1.8028 -3.6494 -0.1807 16 6 2.9812 -3.6985 -1.0722 17 6 3.0602 -2.8384 -2.1927 18 6 4.1487 -2.8938 -3.0030 19 6 5.1832 -3.8062 -2.7178 20 7 6.3364 -4.0743 -3.3200 21 6 6.9733 -5.0313 -2.6600 22 7 6.2560 -5.4079 -1.6280 23 7 5.0896 -4.6293 -1.6311 24 6 4.0067 -4.5812 -0.8145 25 1 -0.4850 0.8400 0.0004 26 1 -0.1370 -1.4452 1.5768 27 1 -1.2799 -3.5207 2.1506 28 1 1.4655 -5.7678 -0.2313 29 1 2.2608 -2.1431 -2.4022 30 1 4.2202 -2.2425 -3.8615 31 1 7.9343 -5.4418 -2.9330 32 1 3.9484 -5.2383 0.0406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240356376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:54 Heat of formation + Delta-G solvation = 83.363649 kcal Electronic energy + Delta-G solvation = -20870.383076 eV Core-core repulsion = 17518.920395 eV Total energy + Delta-G solvation = -3351.462681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.67403 -42.21636 -38.48291 -36.70840 -33.99715 -33.16443 -31.75074 -29.98278 -29.60254 -28.22022 -25.42219 -23.82283 -23.01574 -21.68586 -21.31389 -20.56677 -17.72959 -17.40807 -16.79113 -16.19590 -15.82355 -15.59635 -14.94730 -14.73886 -14.48960 -14.42017 -14.13804 -13.63802 -13.00252 -12.53572 -12.40323 -12.21751 -12.13190 -11.70730 -11.54193 -11.35724 -11.09614 -10.92936 -10.79805 -10.64188 -10.25501 -9.89920 -9.77886 -9.49343 -9.08590 -8.13917 -7.73024 -7.48154 -7.15020 -4.74365 1.06249 1.31182 2.31435 2.45020 2.56979 2.88255 2.89533 2.94936 3.09545 3.64669 3.82994 4.19368 4.34236 4.55057 5.07136 5.12782 5.25898 5.39079 5.63187 5.68326 5.79784 5.84034 6.10758 6.32777 6.45942 6.58917 6.63168 6.68257 6.73546 6.81139 6.86585 7.05690 7.13858 7.34416 7.53400 7.60539 7.80560 8.14934 8.28367 8.40673 8.47456 9.74789 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.007161 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.231636 B = 3909.047554 C = 5853.178795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.442 4.442 8 H 0.087 0.913 9 C 0.128 3.872 10 C -0.130 4.130 11 C -0.120 4.120 12 C -0.042 4.042 13 F -0.171 7.171 14 C -0.091 4.091 15 C -0.172 4.172 16 C -0.001 4.001 17 C -0.022 4.022 18 C -0.129 4.129 19 C 0.273 3.727 20 N -0.563 5.563 21 C 0.222 3.778 22 N -0.360 5.360 23 N -0.272 5.272 24 C 0.070 3.930 25 H 0.289 0.711 26 H 0.130 0.870 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.218 0.782 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -0.761 -2.058 4.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.125 3.875 10 C -0.149 4.149 11 C -0.139 4.139 12 C -0.061 4.061 13 F -0.150 7.150 14 C -0.110 4.110 15 C -0.175 4.175 16 C -0.006 4.006 17 C -0.047 4.047 18 C -0.150 4.150 19 C 0.021 3.979 20 N -0.295 5.295 21 C -0.078 4.078 22 N -0.193 5.193 23 N -0.045 5.045 24 C -0.057 4.057 25 H 0.101 0.899 26 H 0.147 0.853 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.177 0.823 30 H 0.169 0.831 31 H 0.234 0.766 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.626 -1.102 -1.910 4.244 hybrid contribution 0.065 0.578 0.132 0.597 sum 3.691 -0.523 -1.778 4.130 Atomic orbital electron populations 1.69759 1.07702 1.30443 1.31975 1.25999 0.94804 1.01715 0.91910 0.86314 0.80279 0.79583 0.80636 1.18383 1.19947 1.18483 1.19598 0.97822 0.90648 1.38942 0.89524 1.17507 0.90712 0.90919 0.88352 1.20953 0.97976 0.96659 0.99341 1.20555 1.00243 0.91929 1.01172 1.17147 0.98680 0.81513 1.08789 1.91310 1.81526 1.49819 1.92383 1.20534 0.95283 0.97144 0.97998 1.17861 0.99492 0.93651 1.06499 1.18540 0.93169 0.93759 0.95096 1.21651 0.96866 0.95483 0.90708 1.20164 0.91778 0.99833 1.03271 1.21801 0.95088 0.94245 0.86767 1.70820 1.05791 1.21070 1.31784 1.25949 0.99898 0.92632 0.89357 1.78409 0.95057 1.19991 1.25811 1.47406 1.13909 1.24238 1.18929 1.21974 0.84462 1.03046 0.96264 0.89942 0.85280 0.87815 0.87701 0.82339 0.83144 0.76606 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.67 11.00 55.55 0.61 -16.06 16 2 C 0.08 1.60 5.16 -17.32 -0.09 1.51 16 3 Si 0.91 16.02 29.59 -169.99 -5.03 10.99 16 4 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.44 -9.51 7.11 -37.95 -0.27 -9.78 16 8 H 0.09 1.83 6.64 -52.48 -0.35 1.48 16 9 C 0.13 2.81 5.55 -106.55 -0.59 2.22 16 10 C -0.13 -2.86 8.61 -39.30 -0.34 -3.20 16 11 C -0.12 -2.50 9.94 -39.90 -0.40 -2.90 16 12 C -0.04 -0.87 7.30 -39.17 -0.29 -1.16 16 13 F -0.17 -3.54 17.26 2.25 0.04 -3.50 16 14 C -0.09 -1.81 9.46 -39.22 -0.37 -2.18 16 15 C -0.17 -3.49 5.52 -104.24 -0.58 -4.07 16 16 C 0.00 -0.02 4.91 -104.91 -0.52 -0.54 16 17 C -0.02 -0.37 8.02 -39.22 -0.31 -0.68 16 18 C -0.13 -2.08 10.08 -39.46 -0.40 -2.48 16 19 C 0.27 4.94 7.87 -156.24 -1.23 3.71 16 20 N -0.56 -10.03 11.25 -13.94 -0.16 -10.19 16 21 C 0.22 3.51 12.98 -92.00 -1.19 2.31 16 22 N -0.36 -6.44 12.78 29.25 0.37 -6.07 16 23 N -0.27 -5.03 3.88 -11.74 -0.05 -5.07 16 24 C 0.07 1.25 10.72 -16.02 -0.17 1.07 16 25 H 0.29 5.69 8.30 -40.82 -0.34 5.35 16 26 H 0.13 2.88 6.26 -52.48 -0.33 2.55 16 27 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.10 1.90 8.04 -52.49 -0.42 1.48 16 29 H 0.16 2.65 7.34 -52.49 -0.39 2.27 16 30 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.22 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.17 2.69 8.02 -52.49 -0.42 2.27 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -25.16 289.10 -8.90 -34.06 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -2.31 Total: 7.64 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -6.74 Total: -16.15 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.78 Total: -37.39 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.16 -8.90 -34.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240356376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.423 kcal (2) G-P(sol) polarization free energy of solvation -25.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds