Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48493 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47248 * 300.00851 * 3 2 1 6 6 H 1.48507 * 109.46622 * 60.00396 * 3 2 1 7 7 C 1.40013 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 164.18130 * 7 2 1 9 9 C 1.40860 * 120.00234 * 344.17699 * 7 2 1 10 10 C 1.40728 * 120.31511 * 334.04110 * 9 7 2 11 11 C 1.37606 * 119.84511 * 179.97438 * 10 9 7 12 12 F 1.35102 * 119.74596 * 179.97438 * 11 10 9 13 13 C 1.39207 * 120.51224 * 359.97438 * 11 10 9 14 14 C 1.37971 * 120.65545 * 359.72053 * 13 11 10 15 15 C 1.39185 * 120.12861 * 0.55991 * 14 13 11 16 16 C 1.47825 * 120.25484 * 179.71270 * 15 14 13 17 17 C 1.41479 * 120.12171 * 129.72364 * 16 15 14 18 18 C 1.35803 * 119.50351 * 179.97438 * 17 16 15 19 19 C 1.40863 * 119.62903 * 0.02562 * 18 17 16 20 20 N 1.32826 * 132.57856 * 179.97438 * 19 18 17 21 21 C 1.32559 * 109.70451 * 180.02562 * 20 19 18 22 22 N 1.31207 * 109.64248 * 0.22722 * 21 20 19 23 23 N 1.36657 * 120.05557 * 0.02562 * 19 18 17 24 24 C 1.35707 * 120.78793 * 359.97438 * 23 19 18 25 25 H 0.96996 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.07814 * 359.95091 * 10 9 7 27 27 H 1.08007 * 119.67399 * 180.02562 * 13 11 10 28 28 H 1.07995 * 119.93758 * 180.29860 * 14 13 11 29 29 H 1.07999 * 120.24714 * 0.02562 * 17 16 15 30 30 H 1.08004 * 120.18584 * 179.97438 * 18 17 16 31 31 H 1.08003 * 125.17771 * 179.97438 * 21 20 19 32 32 H 1.08007 * 119.86400 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.7020 1.3465 -0.0006 5 1 1.8832 2.3966 -1.2123 6 1 1.8832 2.3964 1.2126 7 6 2.0081 -1.2125 -0.0005 8 1 3.0575 -1.2301 -0.2555 9 6 1.3440 -2.4095 0.3315 10 6 0.2065 -2.3845 1.1598 11 6 -0.4351 -3.5596 1.4777 12 9 -1.5266 -3.5333 2.2734 13 6 0.0317 -4.7752 0.9856 14 6 1.1411 -4.8234 0.1668 15 6 1.8143 -3.6518 -0.1671 16 6 3.0071 -3.7008 -1.0390 17 6 3.1002 -2.8472 -2.1634 18 6 4.2018 -2.9024 -2.9556 19 6 5.2360 -3.8080 -2.6482 20 7 6.4000 -4.0742 -3.2300 21 6 7.0308 -5.0240 -2.5539 22 7 6.2989 -5.3975 -1.5310 23 7 5.1283 -4.6257 -1.5585 24 6 4.0318 -4.5786 -0.7604 25 1 -0.4850 0.8400 0.0004 26 1 -0.1617 -1.4453 1.5454 27 1 -0.4826 -5.6893 1.2433 28 1 1.4904 -5.7723 -0.2123 29 1 2.3015 -2.1564 -2.3896 30 1 4.2842 -2.2561 -3.8170 31 1 7.9980 -5.4315 -2.8088 32 1 3.9624 -5.2313 0.0973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240358110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = 82.490689 kcal Electronic energy + Delta-G solvation = -20863.264861 eV Core-core repulsion = 17511.764325 eV Total energy + Delta-G solvation = -3351.500536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.85890 -42.20960 -38.45783 -36.64386 -34.08804 -33.15956 -31.52650 -30.11109 -29.70460 -27.82571 -25.75936 -23.73866 -22.93178 -21.70868 -21.42485 -20.45946 -17.88518 -17.34580 -16.67631 -16.13578 -15.72675 -15.69981 -15.11651 -14.78505 -14.54428 -14.51563 -13.92509 -13.45269 -13.09085 -12.79734 -12.48383 -12.32460 -11.88351 -11.67604 -11.46586 -11.33639 -11.02369 -10.92540 -10.78154 -10.61360 -10.35121 -9.92934 -9.80277 -9.54070 -9.02840 -8.01959 -7.88055 -7.37901 -7.09986 -4.81027 1.07104 1.31748 2.30225 2.48316 2.56681 2.89762 2.93191 2.95572 3.09261 3.65346 3.83139 4.20021 4.34623 4.55395 5.10244 5.12183 5.27009 5.42687 5.45268 5.68188 5.79972 6.00233 6.11097 6.32206 6.46625 6.58713 6.65242 6.66518 6.68841 6.79882 6.91583 7.12032 7.17655 7.36951 7.46159 7.57742 7.83254 8.16892 8.28734 8.41323 8.45418 9.75046 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.006489 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.725833 B = 4313.876455 C = 5924.794975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.442 4.442 8 H 0.089 0.911 9 C 0.151 3.849 10 C -0.193 4.193 11 C 0.114 3.886 12 F -0.164 7.164 13 C -0.275 4.275 14 C -0.039 4.039 15 C -0.197 4.197 16 C 0.001 3.999 17 C -0.023 4.023 18 C -0.129 4.129 19 C 0.272 3.728 20 N -0.563 5.563 21 C 0.222 3.778 22 N -0.361 5.361 23 N -0.272 5.272 24 C 0.068 3.932 25 H 0.289 0.711 26 H 0.133 0.867 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.217 0.783 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -2.048 -2.499 4.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.107 0.893 9 C 0.148 3.852 10 C -0.213 4.213 11 C 0.095 3.905 12 F -0.143 7.143 13 C -0.295 4.295 14 C -0.057 4.057 15 C -0.199 4.199 16 C -0.004 4.004 17 C -0.049 4.049 18 C -0.150 4.150 19 C 0.020 3.980 20 N -0.295 5.295 21 C -0.079 4.079 22 N -0.193 5.193 23 N -0.044 5.044 24 C -0.060 4.060 25 H 0.100 0.900 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.176 0.824 30 H 0.168 0.832 31 H 0.234 0.766 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.033 -2.348 -2.321 5.213 hybrid contribution -0.044 0.774 0.226 0.808 sum 3.989 -1.574 -2.095 4.773 Atomic orbital electron populations 1.69774 1.07775 1.30288 1.31629 1.26034 0.94797 1.01845 0.91872 0.86219 0.81208 0.80298 0.79137 1.17926 1.19408 1.19296 1.19677 0.97846 0.90538 1.38859 0.89267 1.17199 0.89608 0.91076 0.87317 1.21274 1.00302 0.96124 1.03564 1.17794 0.84721 0.95222 0.92773 1.91357 1.52968 1.97601 1.72404 1.20214 1.03484 0.95448 1.10353 1.20406 0.94051 0.95906 0.95349 1.18153 0.99563 0.94240 1.07950 1.18591 0.93218 0.93607 0.94966 1.21674 0.96825 0.95489 0.90888 1.20168 0.91645 0.99929 1.03298 1.21796 0.94947 0.94340 0.86873 1.70819 1.05658 1.21194 1.31822 1.25944 0.99945 0.92706 0.89273 1.78405 0.94589 1.20315 1.26021 1.47409 1.13439 1.24519 1.19081 1.21977 0.84109 1.03234 0.96642 0.90003 0.84897 0.87761 0.87935 0.82376 0.83178 0.76633 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.14 10.93 55.55 0.61 -16.53 16 2 C 0.08 1.62 5.17 -17.33 -0.09 1.53 16 3 Si 0.91 16.29 29.59 -169.99 -5.03 11.26 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 6 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -9.65 7.14 -37.93 -0.27 -9.92 16 8 H 0.09 1.90 6.58 -52.49 -0.35 1.56 16 9 C 0.15 3.38 5.56 -106.57 -0.59 2.78 16 10 C -0.19 -4.45 8.64 -38.87 -0.34 -4.78 16 11 C 0.11 2.51 7.28 -39.45 -0.29 2.22 16 12 F -0.16 -3.55 17.26 2.25 0.04 -3.51 16 13 C -0.28 -5.50 10.01 -39.32 -0.39 -5.90 16 14 C -0.04 -0.73 9.47 -39.33 -0.37 -1.11 16 15 C -0.20 -3.94 5.52 -104.23 -0.58 -4.51 16 16 C 0.00 0.01 4.91 -104.91 -0.51 -0.50 16 17 C -0.02 -0.39 7.99 -39.22 -0.31 -0.71 16 18 C -0.13 -2.06 10.08 -39.46 -0.40 -2.46 16 19 C 0.27 4.89 7.87 -156.23 -1.23 3.66 16 20 N -0.56 -9.97 11.25 -13.94 -0.16 -10.13 16 21 C 0.22 3.47 12.98 -91.99 -1.19 2.28 16 22 N -0.36 -6.38 12.78 29.25 0.37 -6.01 16 23 N -0.27 -4.96 3.88 -11.73 -0.05 -5.01 16 24 C 0.07 1.18 10.72 -16.01 -0.17 1.01 16 25 H 0.29 5.83 8.30 -40.82 -0.34 5.49 16 26 H 0.13 3.21 6.19 -52.49 -0.33 2.88 16 27 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.10 1.68 8.03 -52.49 -0.42 1.26 16 29 H 0.16 2.63 7.34 -52.49 -0.39 2.25 16 30 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 31 H 0.22 2.30 8.06 -52.48 -0.42 1.87 16 32 H 0.17 2.61 8.02 -52.48 -0.42 2.19 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -25.58 288.98 -8.90 -34.48 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -2.30 Total: 7.50 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -6.74 Total: -16.40 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.78 Total: -37.67 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -25.58 -8.90 -34.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240358110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.966 kcal (2) G-P(sol) polarization free energy of solvation -25.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds