Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48493 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47248 * 300.00851 * 3 2 1 6 6 H 1.48507 * 109.46622 * 60.00396 * 3 2 1 7 7 C 1.40013 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 164.18130 * 7 2 1 9 9 C 1.40860 * 120.00234 * 344.17699 * 7 2 1 10 10 C 1.40728 * 120.31511 * 334.04110 * 9 7 2 11 11 C 1.37606 * 119.84511 * 179.97438 * 10 9 7 12 12 F 1.35102 * 119.74596 * 179.97438 * 11 10 9 13 13 C 1.39207 * 120.51224 * 359.97438 * 11 10 9 14 14 C 1.37971 * 120.65545 * 359.72053 * 13 11 10 15 15 C 1.39185 * 120.12861 * 0.55991 * 14 13 11 16 16 C 1.47825 * 120.25484 * 179.71270 * 15 14 13 17 17 C 1.41479 * 120.12171 * 129.72364 * 16 15 14 18 18 C 1.35803 * 119.50351 * 179.97438 * 17 16 15 19 19 C 1.40863 * 119.62903 * 0.02562 * 18 17 16 20 20 N 1.32826 * 132.57856 * 179.97438 * 19 18 17 21 21 C 1.32559 * 109.70451 * 180.02562 * 20 19 18 22 22 N 1.31207 * 109.64248 * 0.22722 * 21 20 19 23 23 N 1.36657 * 120.05557 * 0.02562 * 19 18 17 24 24 C 1.35707 * 120.78793 * 359.97438 * 23 19 18 25 25 H 0.96996 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.07814 * 359.95091 * 10 9 7 27 27 H 1.08007 * 119.67399 * 180.02562 * 13 11 10 28 28 H 1.07995 * 119.93758 * 180.29860 * 14 13 11 29 29 H 1.07999 * 120.24714 * 0.02562 * 17 16 15 30 30 H 1.08004 * 120.18584 * 179.97438 * 18 17 16 31 31 H 1.08003 * 125.17771 * 179.97438 * 21 20 19 32 32 H 1.08007 * 119.86400 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.7020 1.3465 -0.0006 5 1 1.8832 2.3966 -1.2123 6 1 1.8832 2.3964 1.2126 7 6 2.0081 -1.2125 -0.0005 8 1 3.0575 -1.2301 -0.2555 9 6 1.3440 -2.4095 0.3315 10 6 0.2065 -2.3845 1.1598 11 6 -0.4351 -3.5596 1.4777 12 9 -1.5266 -3.5333 2.2734 13 6 0.0317 -4.7752 0.9856 14 6 1.1411 -4.8234 0.1668 15 6 1.8143 -3.6518 -0.1671 16 6 3.0071 -3.7008 -1.0390 17 6 3.1002 -2.8472 -2.1634 18 6 4.2018 -2.9024 -2.9556 19 6 5.2360 -3.8080 -2.6482 20 7 6.4000 -4.0742 -3.2300 21 6 7.0308 -5.0240 -2.5539 22 7 6.2989 -5.3975 -1.5310 23 7 5.1283 -4.6257 -1.5585 24 6 4.0318 -4.5786 -0.7604 25 1 -0.4850 0.8400 0.0004 26 1 -0.1617 -1.4453 1.5454 27 1 -0.4826 -5.6893 1.2433 28 1 1.4904 -5.7723 -0.2123 29 1 2.3015 -2.1564 -2.3896 30 1 4.2842 -2.2561 -3.8170 31 1 7.9980 -5.4315 -2.8088 32 1 3.9624 -5.2313 0.0973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240358110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = 72.991211 kcal Electronic energy + Delta-G solvation = -20863.676789 eV Core-core repulsion = 17511.764325 eV Total energy + Delta-G solvation = -3351.912464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.56952 -43.52917 -39.95678 -38.08721 -35.68608 -34.49268 -32.98430 -31.71391 -31.06112 -29.33097 -27.36118 -25.10012 -24.32847 -23.15097 -22.88066 -22.00913 -19.51650 -18.70965 -18.03307 -17.77545 -17.10336 -17.08424 -16.67749 -16.39341 -16.22588 -15.82738 -15.23162 -14.88075 -14.58724 -14.28676 -14.09599 -13.65900 -13.44721 -13.11627 -12.98612 -12.79499 -12.54346 -12.29357 -12.11919 -12.09047 -11.95120 -11.50422 -11.13545 -11.12102 -10.41950 -9.55029 -9.43424 -8.91560 -8.66721 -6.46701 -0.26403 -0.04791 0.74112 0.91035 1.20728 1.42181 1.48409 1.54678 1.79811 2.16284 2.47330 2.61897 3.09315 3.29601 3.51978 3.78271 3.79951 3.98075 4.13789 4.37977 4.42015 4.51821 4.55913 4.95074 4.97643 5.06454 5.18057 5.27713 5.31483 5.42801 5.52600 5.57550 5.68442 5.78022 5.89492 5.94621 6.19759 6.51901 6.78121 6.81317 6.98624 8.19053 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.006489 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.725833 B = 4313.876455 C = 5924.794975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.046 3.954 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.457 4.457 8 H 0.090 0.910 9 C 0.130 3.870 10 C -0.219 4.219 11 C 0.099 3.901 12 F -0.167 7.167 13 C -0.275 4.275 14 C -0.036 4.036 15 C -0.190 4.190 16 C -0.011 4.011 17 C -0.026 4.026 18 C -0.119 4.119 19 C 0.258 3.742 20 N -0.579 5.579 21 C 0.229 3.771 22 N -0.381 5.381 23 N -0.284 5.284 24 C 0.076 3.924 25 H 0.294 0.706 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.176 0.824 31 H 0.262 0.738 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -2.752 -3.496 6.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.173 4.173 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.485 4.485 8 H 0.108 0.892 9 C 0.127 3.873 10 C -0.239 4.239 11 C 0.080 3.920 12 F -0.146 7.146 13 C -0.295 4.295 14 C -0.054 4.054 15 C -0.193 4.193 16 C -0.016 4.016 17 C -0.052 4.052 18 C -0.140 4.140 19 C 0.006 3.994 20 N -0.310 5.310 21 C -0.070 4.070 22 N -0.213 5.213 23 N -0.056 5.056 24 C -0.052 4.052 25 H 0.105 0.895 26 H 0.131 0.869 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.194 0.806 31 H 0.277 0.723 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.653 -3.066 -3.320 7.238 hybrid contribution -0.465 0.872 0.495 1.105 sum 5.189 -2.195 -2.825 6.302 Atomic orbital electron populations 1.69824 1.09008 1.31231 1.32752 1.26676 0.95226 1.04272 0.91140 0.85323 0.79710 0.76885 0.79108 1.18121 1.18598 1.19482 1.19771 0.97854 0.91045 1.39837 0.89205 1.17460 0.89768 0.92409 0.87656 1.21207 1.01714 0.95841 1.05181 1.18036 0.84865 0.95861 0.93247 1.91338 1.53105 1.97658 1.72531 1.20502 1.03706 0.95377 1.09902 1.20744 0.93267 0.96918 0.94489 1.18344 0.99908 0.93806 1.07206 1.18476 0.93009 0.94716 0.95369 1.21627 0.97221 0.95422 0.90888 1.20412 0.90572 0.99443 1.03577 1.22197 0.95523 0.94627 0.87008 1.70862 1.05786 1.22030 1.32357 1.26862 1.00860 0.91410 0.87898 1.78392 0.94735 1.20999 1.27190 1.47538 1.13786 1.24927 1.19352 1.22065 0.83723 1.02701 0.96686 0.89511 0.86927 0.85528 0.84752 0.82581 0.80622 0.72284 0.80433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.69 10.93 21.84 0.24 -36.45 16 2 C 0.05 1.96 5.17 85.28 0.44 2.40 16 3 Si 0.97 33.41 29.59 68.60 2.03 35.44 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.46 -20.23 7.14 23.34 0.17 -20.06 16 8 H 0.09 3.85 6.58 -2.91 -0.02 3.83 16 9 C 0.13 5.89 5.56 -21.13 -0.12 5.78 16 10 C -0.22 -10.44 8.64 22.73 0.20 -10.24 16 11 C 0.10 4.41 7.28 22.35 0.16 4.57 16 12 F -0.17 -7.34 17.26 44.97 0.78 -6.57 16 13 C -0.28 -10.68 10.01 22.44 0.22 -10.46 16 14 C -0.04 -1.31 9.47 22.43 0.21 -1.09 16 15 C -0.19 -7.49 5.52 -19.61 -0.11 -7.59 16 16 C -0.01 -0.39 4.91 -20.05 -0.10 -0.49 16 17 C -0.03 -0.85 7.99 22.50 0.18 -0.67 16 18 C -0.12 -3.57 10.08 22.35 0.23 -3.34 16 19 C 0.26 8.73 7.87 134.15 1.06 9.78 16 20 N -0.58 -18.99 11.25 -198.01 -2.23 -21.21 16 21 C 0.23 6.49 12.98 180.83 2.35 8.84 16 22 N -0.38 -12.56 12.78 -61.37 -0.78 -13.34 16 23 N -0.28 -9.77 3.88 -191.01 -0.74 -10.51 16 24 C 0.08 2.51 10.72 83.98 0.90 3.41 16 25 H 0.29 12.17 8.30 -92.71 -0.77 11.40 16 26 H 0.11 5.73 6.19 -2.91 -0.02 5.71 16 27 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 28 H 0.13 3.98 8.03 -2.91 -0.02 3.96 16 29 H 0.16 5.13 7.34 -2.91 -0.02 5.11 16 30 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.26 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.18 5.26 8.02 -2.91 -0.02 5.23 16 Total: -1.00 -54.59 288.98 6.25 -48.33 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.18 Total: 23.50 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.79 Total: -19.18 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.52 Total: -81.52 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.78 Total: -6.57 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 2.03 Total: 35.44 kcal Total: -54.59 6.25 -48.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240358110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.324 kcal (2) G-P(sol) polarization free energy of solvation -54.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds