Wall clock time and date at job start Tue Mar 31 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86801 * 120.00344 * 2 1 4 4 H 1.48496 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47084 * 300.00053 * 3 2 1 6 6 H 1.48503 * 109.47032 * 59.99814 * 3 2 1 7 7 C 1.39897 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99754 * 162.96534 * 7 2 1 9 9 C 1.41333 * 120.00071 * 342.96621 * 7 2 1 10 10 C 1.40850 * 120.15742 * 334.61936 * 9 7 2 11 11 C 1.37558 * 120.02131 * 180.02562 * 10 9 7 12 12 C 1.38750 * 120.34622 * 0.02562 * 11 10 9 13 13 F 1.35109 * 119.84404 * 180.02562 * 12 11 10 14 14 C 1.39983 * 120.31752 * 359.97304 * 12 11 10 15 15 C 1.48412 * 120.01807 * 180.02562 * 14 12 11 16 16 C 1.41239 * 120.02448 * 129.99933 * 15 14 12 17 17 C 1.35943 * 119.52548 * 179.97438 * 16 15 14 18 18 C 1.40765 * 119.43442 * 0.02562 * 17 16 15 19 19 N 1.32859 * 132.70836 * 180.02562 * 18 17 16 20 20 C 1.32513 * 109.69080 * 179.97438 * 19 18 17 21 21 N 1.31250 * 109.64349 * 0.23726 * 20 19 18 22 22 N 1.36633 * 119.90553 * 359.97438 * 18 17 16 23 23 C 1.35825 * 120.74018 * 0.02562 * 22 18 17 24 24 C 1.38660 * 119.97311 * 0.27962 * 14 12 11 25 25 H 0.97004 * 119.99766 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.98738 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.82864 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.23695 * 359.96402 * 16 15 14 29 29 H 1.08004 * 120.28288 * 179.97438 * 17 16 15 30 30 H 1.08004 * 125.18192 * 179.97438 * 20 19 18 31 31 H 1.07994 * 119.77835 * 179.97438 * 23 22 18 32 32 H 1.07998 * 120.17221 * 179.70103 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0080 -1.2116 0.0005 8 1 3.0526 -1.2322 -0.2735 9 6 1.3479 -2.4085 0.3596 10 6 0.2178 -2.3688 1.1994 11 6 -0.4223 -3.5356 1.5475 12 6 0.0394 -4.7561 1.0760 13 9 -0.5973 -5.8958 1.4239 14 6 1.1612 -4.8122 0.2405 15 6 1.6491 -6.1212 -0.2605 16 6 1.9047 -6.2999 -1.6380 17 6 2.3519 -7.5031 -2.0858 18 6 2.5522 -8.5517 -1.1684 19 7 2.9712 -9.8046 -1.3093 20 6 2.9910 -10.4044 -0.1278 21 7 2.5854 -9.5677 0.7986 22 7 2.2975 -8.3533 0.1593 23 6 1.8507 -7.1519 0.6085 24 6 1.8197 -3.6447 -0.1145 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1463 -1.4220 1.5701 27 1 -1.2883 -3.5015 2.1920 28 1 1.7460 -5.4866 -2.3306 29 1 2.5509 -7.6534 -3.1367 30 1 3.2909 -11.4273 0.0459 31 1 1.6540 -7.0122 1.6611 32 1 2.6884 -3.6847 -0.7549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240358307.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:46 Heat of formation + Delta-G solvation = 85.746877 kcal Electronic energy + Delta-G solvation = -20545.993503 eV Core-core repulsion = 17194.634166 eV Total energy + Delta-G solvation = -3351.359337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.74797 -42.48664 -38.41641 -37.02609 -33.90996 -33.43149 -31.76139 -30.04805 -29.90061 -28.12987 -25.30278 -23.94806 -23.43446 -21.90390 -21.17857 -20.79244 -17.90322 -17.41327 -16.82777 -16.42436 -16.00603 -15.63791 -15.27162 -14.84520 -14.71214 -14.33427 -14.05141 -13.63621 -13.03439 -12.71895 -12.39023 -12.24186 -12.11635 -12.02859 -11.43316 -11.31307 -11.28440 -11.06580 -10.99983 -10.54778 -10.19111 -10.02342 -9.79776 -9.53425 -9.25318 -8.29516 -7.76051 -7.45285 -7.03461 -4.62540 0.80831 1.01676 2.16059 2.39187 2.49309 2.87941 2.95010 2.96669 3.00380 3.55049 3.74757 4.07728 4.25498 4.34224 4.79846 4.93451 5.06268 5.30887 5.43141 5.43970 5.51382 5.91355 5.95303 6.18540 6.28197 6.40529 6.47549 6.55857 6.64621 6.78695 6.85198 6.93902 7.13135 7.34707 7.58137 7.69374 7.87672 8.04500 8.27459 8.56063 8.58727 9.91505 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.004096 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.429938 B = 6834.439168 C = 7432.035544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.103 3.897 10 C -0.131 4.131 11 C -0.126 4.126 12 C -0.028 4.028 13 F -0.168 7.168 14 C -0.057 4.057 15 C -0.048 4.048 16 C -0.037 4.037 17 C -0.118 4.118 18 C 0.276 3.724 19 N -0.557 5.557 20 C 0.228 3.772 21 N -0.351 5.351 22 N -0.278 5.278 23 C 0.114 3.886 24 C -0.181 4.181 25 H 0.285 0.715 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.222 0.778 31 H 0.170 0.830 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -6.199 -1.465 6.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.100 3.900 10 C -0.150 4.150 11 C -0.146 4.146 12 C -0.048 4.048 13 F -0.147 7.147 14 C -0.059 4.059 15 C -0.053 4.053 16 C -0.062 4.062 17 C -0.139 4.139 18 C 0.024 3.976 19 N -0.288 5.288 20 C -0.073 4.073 21 N -0.183 5.183 22 N -0.051 5.051 23 C -0.014 4.014 24 C -0.201 4.201 25 H 0.096 0.904 26 H 0.147 0.853 27 H 0.124 0.876 28 H 0.173 0.827 29 H 0.174 0.826 30 H 0.238 0.762 31 H 0.188 0.812 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.501 -6.616 -0.986 7.141 hybrid contribution 0.041 0.698 0.051 0.701 sum 2.541 -5.918 -0.935 6.508 Atomic orbital electron populations 1.69798 1.07664 1.29771 1.33966 1.25954 0.94800 1.01660 0.92006 0.86196 0.80998 0.80487 0.78794 1.18210 1.19790 1.19528 1.19630 0.98060 0.90827 1.39639 0.89805 1.17570 0.91356 0.91976 0.89106 1.21342 0.98179 0.96508 0.98976 1.20650 1.00556 0.91558 1.01801 1.17244 0.97798 0.81535 1.08263 1.91312 1.81948 1.49787 1.91688 1.17904 0.96659 0.90292 1.00999 1.18511 1.00707 0.93509 0.92533 1.21498 0.92808 0.96877 0.95032 1.20196 1.04383 0.89922 0.99425 1.21841 0.97361 0.93848 0.84595 1.70855 1.28443 1.03665 1.25873 1.26066 0.95093 1.00436 0.85680 1.78497 1.30014 0.89798 1.19950 1.47530 1.40271 1.09464 1.07787 1.21616 0.97713 0.80702 1.01355 1.20887 1.02858 0.90780 1.05572 0.90431 0.85321 0.87615 0.82705 0.82594 0.76203 0.81231 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.13 10.96 55.54 0.61 -17.52 16 2 C 0.07 1.66 5.15 -17.35 -0.09 1.57 16 3 Si 0.91 16.71 29.59 -169.99 -5.03 11.68 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -10.50 9.04 -37.78 -0.34 -10.84 16 8 H 0.08 1.86 7.90 -52.48 -0.41 1.45 16 9 C 0.10 2.37 5.56 -106.86 -0.59 1.78 16 10 C -0.13 -2.98 8.68 -38.84 -0.34 -3.32 16 11 C -0.13 -2.69 9.99 -39.64 -0.40 -3.09 16 12 C -0.03 -0.59 7.15 -38.74 -0.28 -0.87 16 13 F -0.17 -3.43 15.83 2.25 0.04 -3.40 16 14 C -0.06 -1.12 5.47 -104.90 -0.57 -1.69 16 15 C -0.05 -0.82 5.28 -105.26 -0.56 -1.38 16 16 C -0.04 -0.53 9.54 -39.27 -0.37 -0.90 16 17 C -0.12 -1.63 10.09 -39.45 -0.40 -2.03 16 18 C 0.28 4.54 7.88 -156.27 -1.23 3.31 16 19 N -0.56 -9.04 11.25 -13.96 -0.16 -9.20 16 20 C 0.23 3.29 12.98 -92.00 -1.19 2.09 16 21 N -0.35 -5.90 12.78 29.25 0.37 -5.53 16 22 N -0.28 -4.81 3.89 -12.07 -0.05 -4.86 16 23 C 0.11 1.95 10.00 -16.48 -0.16 1.78 16 24 C -0.18 -3.76 9.26 -38.55 -0.36 -4.12 16 25 H 0.28 5.94 8.30 -40.82 -0.34 5.61 16 26 H 0.13 3.02 6.18 -52.49 -0.32 2.70 16 27 H 0.11 2.04 8.06 -52.48 -0.42 1.62 16 28 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 30 H 0.22 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.17 2.84 7.68 -52.49 -0.40 2.43 16 32 H 0.11 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -26.58 292.00 -9.09 -35.66 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.39 Total: 6.46 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -6.88 Total: -17.70 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.78 Total: -37.11 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.40 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.58 -9.09 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240358307.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.411 kcal (2) G-P(sol) polarization free energy of solvation -26.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds