Wall clock time and date at job start Tue Mar 31 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86801 * 120.00344 * 2 1 4 4 H 1.48496 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47084 * 300.00053 * 3 2 1 6 6 H 1.48503 * 109.47032 * 59.99814 * 3 2 1 7 7 C 1.39897 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99754 * 162.96534 * 7 2 1 9 9 C 1.41333 * 120.00071 * 342.96621 * 7 2 1 10 10 C 1.40850 * 120.15742 * 334.61936 * 9 7 2 11 11 C 1.37558 * 120.02131 * 180.02562 * 10 9 7 12 12 C 1.38750 * 120.34622 * 0.02562 * 11 10 9 13 13 F 1.35109 * 119.84404 * 180.02562 * 12 11 10 14 14 C 1.39983 * 120.31752 * 359.97304 * 12 11 10 15 15 C 1.48412 * 120.01807 * 180.02562 * 14 12 11 16 16 C 1.41239 * 120.02448 * 129.99933 * 15 14 12 17 17 C 1.35943 * 119.52548 * 179.97438 * 16 15 14 18 18 C 1.40765 * 119.43442 * 0.02562 * 17 16 15 19 19 N 1.32859 * 132.70836 * 180.02562 * 18 17 16 20 20 C 1.32513 * 109.69080 * 179.97438 * 19 18 17 21 21 N 1.31250 * 109.64349 * 0.23726 * 20 19 18 22 22 N 1.36633 * 119.90553 * 359.97438 * 18 17 16 23 23 C 1.35825 * 120.74018 * 0.02562 * 22 18 17 24 24 C 1.38660 * 119.97311 * 0.27962 * 14 12 11 25 25 H 0.97004 * 119.99766 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.98738 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.82864 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.23695 * 359.96402 * 16 15 14 29 29 H 1.08004 * 120.28288 * 179.97438 * 17 16 15 30 30 H 1.08004 * 125.18192 * 179.97438 * 20 19 18 31 31 H 1.07994 * 119.77835 * 179.97438 * 23 22 18 32 32 H 1.07998 * 120.17221 * 179.70103 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0080 -1.2116 0.0005 8 1 3.0526 -1.2322 -0.2735 9 6 1.3479 -2.4085 0.3596 10 6 0.2178 -2.3688 1.1994 11 6 -0.4223 -3.5356 1.5475 12 6 0.0394 -4.7561 1.0760 13 9 -0.5973 -5.8958 1.4239 14 6 1.1612 -4.8122 0.2405 15 6 1.6491 -6.1212 -0.2605 16 6 1.9047 -6.2999 -1.6380 17 6 2.3519 -7.5031 -2.0858 18 6 2.5522 -8.5517 -1.1684 19 7 2.9712 -9.8046 -1.3093 20 6 2.9910 -10.4044 -0.1278 21 7 2.5854 -9.5677 0.7986 22 7 2.2975 -8.3533 0.1593 23 6 1.8507 -7.1519 0.6085 24 6 1.8197 -3.6447 -0.1145 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1463 -1.4220 1.5701 27 1 -1.2883 -3.5015 2.1920 28 1 1.7460 -5.4866 -2.3306 29 1 2.5509 -7.6534 -3.1367 30 1 3.2909 -11.4273 0.0459 31 1 1.6540 -7.0122 1.6611 32 1 2.6884 -3.6847 -0.7549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240358307.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:46 Heat of formation + Delta-G solvation = 75.311781 kcal Electronic energy + Delta-G solvation = -20546.446003 eV Core-core repulsion = 17194.634166 eV Total energy + Delta-G solvation = -3351.811837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.40275 -43.70304 -39.85698 -38.48729 -35.54852 -34.64264 -33.19700 -31.63162 -31.24164 -29.58526 -26.99060 -25.21992 -24.74139 -23.11586 -22.76576 -22.38538 -19.43177 -18.72399 -18.21992 -17.96516 -17.30444 -17.17009 -16.62884 -16.41204 -16.15732 -15.80917 -15.34578 -14.96554 -14.59419 -14.05519 -13.87199 -13.72896 -13.65518 -13.48360 -12.97859 -12.78624 -12.61544 -12.48681 -12.26474 -12.14738 -11.75699 -11.45695 -11.24662 -11.07918 -10.66426 -9.68710 -9.38417 -8.99649 -8.69206 -6.37067 -0.42609 -0.22182 0.71065 0.81376 1.05925 1.44640 1.48892 1.58714 1.67870 2.21870 2.32200 2.62197 2.94017 3.16123 3.48470 3.60638 3.69924 3.85725 3.97618 4.19788 4.26760 4.31921 4.76115 4.84875 4.95039 4.97725 5.13759 5.15320 5.26664 5.27305 5.36665 5.44961 5.63235 5.69740 5.85997 5.98863 6.18922 6.56139 6.84375 6.85805 6.87329 8.28158 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.004096 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.429938 B = 6834.439168 C = 7432.035544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.481 4.481 8 H 0.087 0.913 9 C 0.080 3.920 10 C -0.152 4.152 11 C -0.129 4.129 12 C -0.040 4.040 13 F -0.166 7.166 14 C -0.045 4.045 15 C -0.058 4.058 16 C -0.036 4.036 17 C -0.102 4.102 18 C 0.262 3.738 19 N -0.570 5.570 20 C 0.235 3.765 21 N -0.379 5.379 22 N -0.290 5.290 23 C 0.108 3.892 24 C -0.182 4.182 25 H 0.291 0.709 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.176 0.824 29 H 0.191 0.809 30 H 0.265 0.735 31 H 0.165 0.835 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -6.876 -2.646 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.509 4.509 8 H 0.105 0.895 9 C 0.077 3.923 10 C -0.172 4.172 11 C -0.148 4.148 12 C -0.060 4.060 13 F -0.146 7.146 14 C -0.047 4.047 15 C -0.063 4.063 16 C -0.061 4.061 17 C -0.123 4.123 18 C 0.009 3.991 19 N -0.301 5.301 20 C -0.064 4.064 21 N -0.211 5.211 22 N -0.063 5.063 23 C -0.020 4.020 24 C -0.201 4.201 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.194 0.806 29 H 0.209 0.791 30 H 0.281 0.719 31 H 0.182 0.818 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.468 -7.313 -2.163 8.378 hybrid contribution -0.266 0.734 0.414 0.883 sum 3.202 -6.579 -1.749 7.523 Atomic orbital electron populations 1.69844 1.08954 1.30949 1.34502 1.26706 0.95410 1.04461 0.91143 0.85178 0.79622 0.76363 0.78784 1.17963 1.19262 1.19281 1.19890 0.98420 0.91721 1.40907 0.89503 1.17893 0.91794 0.93100 0.89512 1.21258 0.99188 0.96449 1.00306 1.20802 1.00816 0.91407 1.01744 1.17402 0.98359 0.81455 1.08767 1.91311 1.81965 1.49563 1.91731 1.18019 0.95643 0.91357 0.99684 1.18411 1.01662 0.92248 0.93931 1.21654 0.92604 0.97893 0.93948 1.20587 1.02505 0.88638 1.00606 1.22419 0.97275 0.94645 0.84717 1.70905 1.28908 1.03688 1.26590 1.26973 0.93192 1.01662 0.84604 1.78474 1.31248 0.90098 1.21254 1.47593 1.40844 1.09549 1.08332 1.21504 0.98142 0.81071 1.01275 1.21056 1.03211 0.90340 1.05537 0.89777 0.86665 0.86237 0.80616 0.79149 0.71904 0.81766 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.16 10.96 21.82 0.24 -37.92 16 2 C 0.04 1.75 5.15 85.24 0.44 2.18 16 3 Si 0.98 33.98 29.59 68.60 2.03 36.01 16 4 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 5 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 6 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.48 -22.49 9.04 23.43 0.21 -22.28 16 8 H 0.09 3.86 7.90 -2.91 -0.02 3.84 16 9 C 0.08 3.73 5.56 -21.31 -0.12 3.61 16 10 C -0.15 -7.15 8.68 22.75 0.20 -6.95 16 11 C -0.13 -5.55 9.99 22.23 0.22 -5.33 16 12 C -0.04 -1.67 7.15 22.82 0.16 -1.50 16 13 F -0.17 -6.77 15.83 44.97 0.71 -6.06 16 14 C -0.05 -1.76 5.47 -20.04 -0.11 -1.87 16 15 C -0.06 -1.92 5.28 -20.28 -0.11 -2.02 16 16 C -0.04 -0.94 9.54 22.47 0.21 -0.73 16 17 C -0.10 -2.54 10.09 22.35 0.23 -2.31 16 18 C 0.26 8.06 7.88 134.12 1.06 9.11 16 19 N -0.57 -17.10 11.25 -198.08 -2.23 -19.33 16 20 C 0.24 6.24 12.98 180.83 2.35 8.58 16 21 N -0.38 -12.25 12.78 -61.37 -0.78 -13.03 16 22 N -0.29 -9.73 3.89 -192.11 -0.75 -10.48 16 23 C 0.11 3.64 10.00 83.62 0.84 4.47 16 24 C -0.18 -7.50 9.26 22.94 0.21 -7.29 16 25 H 0.29 12.29 8.30 -92.71 -0.77 11.52 16 26 H 0.12 5.63 6.18 -2.91 -0.02 5.61 16 27 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 28 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.27 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.17 5.56 7.68 -2.91 -0.02 5.53 16 32 H 0.13 4.63 8.04 -2.91 -0.02 4.60 16 Total: -1.00 -57.06 292.00 6.18 -50.88 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.17 Total: 22.25 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 5.79 Total: -22.32 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -3.52 Total: -80.75 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.71 Total: -6.06 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Total: -57.06 6.18 -50.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240358307.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.188 kcal (2) G-P(sol) polarization free energy of solvation -57.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds