Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86802 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47245 * 274.64910 * 3 2 1 5 5 H 1.48503 * 109.46759 * 34.65165 * 3 2 1 6 6 H 1.48501 * 109.47011 * 154.64866 * 3 2 1 7 7 C 1.39946 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00095 * 162.09645 * 7 2 1 9 9 C 1.41001 * 119.99797 * 342.08826 * 7 2 1 10 10 C 1.40987 * 120.09605 * 154.97520 * 9 7 2 11 11 C 1.36207 * 119.92715 * 180.02562 * 10 9 7 12 12 C 1.39972 * 120.13663 * 0.02562 * 11 10 9 13 13 C 1.47913 * 119.89633 * 180.02562 * 12 11 10 14 14 C 1.41457 * 120.50682 * 129.73722 * 13 12 11 15 15 N 1.30931 * 120.08841 * 179.77932 * 14 13 12 16 16 C 1.34089 * 121.20237 * 0.47657 * 15 14 13 17 17 C 1.38846 * 132.24447 * 179.78691 * 16 15 14 18 18 C 1.38783 * 107.66007 * 180.02562 * 17 16 15 19 19 N 1.31341 * 108.97903 * 359.97438 * 18 17 16 20 20 N 1.37163 * 120.90924 * 359.78732 * 16 15 14 21 21 C 1.36287 * 119.95130 * 359.96540 * 20 16 15 22 22 C 1.40186 * 120.20570 * 0.02562 * 12 11 10 23 23 F 1.35102 * 119.96614 * 179.70575 * 22 12 11 24 24 C 1.36434 * 120.07018 * 359.97438 * 22 12 11 25 25 H 0.96993 * 120.00222 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.04097 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.92895 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.95594 * 0.03041 * 14 13 12 29 29 H 1.08004 * 126.16805 * 359.97438 * 17 16 15 30 30 H 1.08002 * 125.50794 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.57128 * 179.97438 * 21 20 16 32 32 H 1.08003 * 120.07458 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3916 2.1032 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4138 0.5995 7 6 2.0081 -1.2120 -0.0005 8 1 3.0489 -1.2345 -0.2881 9 6 1.3543 -2.4036 0.3745 10 6 1.8231 -3.6462 -0.0987 11 6 1.1886 -4.7952 0.2653 12 6 0.0719 -4.7447 1.1077 13 6 -0.6127 -5.9958 1.5002 14 6 -0.8941 -6.2642 2.8602 15 7 -1.5044 -7.3722 3.1980 16 6 -1.8658 -8.2753 2.2751 17 6 -2.5063 -9.5035 2.3715 18 6 -2.6275 -10.0170 1.0879 19 7 -2.0985 -9.1682 0.2365 20 7 -1.6104 -8.0636 0.9442 21 6 -0.9817 -6.9221 0.5452 22 6 -0.3996 -3.5122 1.5807 23 9 -1.4815 -3.4686 2.3887 24 6 0.2295 -2.3561 1.2214 25 1 -0.4850 0.8400 -0.0004 26 1 2.6843 -3.6871 -0.7491 27 1 1.5474 -5.7471 -0.0975 28 1 -0.6088 -5.5523 3.6206 29 1 -2.8479 -9.9745 3.2814 30 1 -3.0838 -10.9615 0.8306 31 1 -0.7753 -6.7453 -0.5001 32 1 -0.1340 -1.4064 1.5853 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240428212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = 71.323860 kcal Electronic energy + Delta-G solvation = -20525.517875 eV Core-core repulsion = 17173.533109 eV Total energy + Delta-G solvation = -3351.984766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.62353 -43.19623 -39.73512 -38.66684 -35.93100 -34.92003 -33.09352 -31.10080 -30.85873 -29.85292 -27.19638 -25.75413 -24.30411 -23.05921 -22.58872 -22.07333 -19.63417 -19.12402 -18.31881 -17.80889 -17.20409 -17.05613 -16.63434 -16.42432 -16.21456 -15.98643 -15.08857 -14.94395 -14.47713 -14.37570 -14.04948 -14.02724 -13.64300 -13.46685 -13.13377 -12.83511 -12.66494 -12.38444 -12.17593 -12.05406 -11.89594 -11.60027 -11.15033 -10.92029 -10.53637 -9.50820 -9.38484 -8.85392 -8.71294 -6.48615 -0.50282 -0.25026 0.70291 0.96787 1.09666 1.40466 1.47078 1.56133 1.68316 2.15738 2.36398 2.58503 2.86062 3.17505 3.43013 3.53160 3.71618 3.84658 4.15429 4.30408 4.39593 4.41994 4.55324 4.82535 4.89880 4.96720 4.99902 5.09015 5.19097 5.31742 5.57396 5.60558 5.69194 5.83637 5.93275 6.19134 6.42504 6.49780 6.57065 6.74934 6.80489 8.14713 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.042375 B = 0.003787 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.611040 B = 7392.765837 C = 7693.458861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.468 4.468 8 H 0.095 0.905 9 C 0.112 3.888 10 C -0.238 4.238 11 C -0.034 4.034 12 C -0.223 4.223 13 C -0.096 4.096 14 C 0.195 3.805 15 N -0.485 5.485 16 C 0.221 3.779 17 C -0.278 4.278 18 C 0.095 3.905 19 N -0.348 5.348 20 N -0.314 5.314 21 C 0.139 3.861 22 C 0.129 3.871 23 F -0.162 7.162 24 C -0.230 4.230 25 H 0.295 0.705 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.186 0.814 29 H 0.180 0.820 30 H 0.241 0.759 31 H 0.192 0.808 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 -8.697 1.505 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.495 4.495 8 H 0.113 0.887 9 C 0.108 3.892 10 C -0.257 4.257 11 C -0.052 4.052 12 C -0.226 4.226 13 C -0.102 4.102 14 C 0.011 3.989 15 N -0.195 5.195 16 C -0.006 4.006 17 C -0.309 4.309 18 C -0.082 4.082 19 N -0.173 5.173 20 N -0.084 5.084 21 C 0.005 3.995 22 C 0.110 3.890 23 F -0.141 7.141 24 C -0.251 4.251 25 H 0.106 0.894 26 H 0.136 0.864 27 H 0.150 0.850 28 H 0.203 0.797 29 H 0.198 0.802 30 H 0.257 0.743 31 H 0.209 0.791 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.971 -8.820 1.072 8.938 hybrid contribution -0.063 1.157 0.155 1.169 sum -1.034 -7.663 1.227 7.829 Atomic orbital electron populations 1.69860 1.09374 1.31506 1.32144 1.26927 0.95418 1.05111 0.90852 0.85129 0.79374 0.75426 0.79585 1.18495 1.19367 1.17598 1.20045 0.99072 0.91939 1.38492 0.88700 1.17784 0.89987 0.93785 0.87605 1.20953 1.05223 0.92151 1.07355 1.20484 0.92644 0.98137 0.93919 1.17512 1.03853 0.87770 1.13499 1.19280 1.02661 0.95304 0.92945 1.23861 0.88041 0.91775 0.95237 1.68113 1.14787 1.03228 1.33411 1.21334 1.01030 0.97741 0.80520 1.21362 1.14181 0.94729 1.00609 1.24537 0.94472 0.99345 0.89804 1.77804 1.24453 0.95671 1.19397 1.47198 1.38305 1.14784 1.08079 1.22683 0.92513 0.82453 1.01883 1.17426 0.84722 0.94407 0.92431 1.91351 1.53637 1.97515 1.71585 1.20865 1.02645 0.95941 1.05616 0.89439 0.86363 0.84958 0.79706 0.80243 0.74280 0.79137 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.53 10.97 21.83 0.24 -38.29 16 2 C 0.04 1.59 5.13 85.25 0.44 2.03 16 3 Si 0.98 33.84 29.60 68.60 2.03 35.87 16 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 5 H -0.27 -9.02 7.11 99.48 0.71 -8.32 16 6 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 7 C -0.47 -22.09 9.03 23.36 0.21 -21.87 16 8 H 0.09 4.18 7.91 -2.91 -0.02 4.15 16 9 C 0.11 5.32 5.57 -21.28 -0.12 5.20 16 10 C -0.24 -9.86 9.73 22.47 0.22 -9.64 16 11 C -0.03 -1.24 9.45 22.22 0.21 -1.03 16 12 C -0.22 -8.68 5.52 -19.82 -0.11 -8.79 16 13 C -0.10 -3.34 5.30 -19.96 -0.11 -3.44 16 14 C 0.19 6.59 10.14 85.62 0.87 7.46 16 15 N -0.48 -16.73 10.45 -191.67 -2.00 -18.73 16 16 C 0.22 7.41 7.91 133.10 1.05 8.47 16 17 C -0.28 -7.39 10.92 22.55 0.25 -7.14 16 18 C 0.10 2.22 11.95 84.90 1.01 3.23 16 19 N -0.35 -10.66 12.66 -57.46 -0.73 -11.39 16 20 N -0.31 -10.55 3.89 -190.71 -0.74 -11.29 16 21 C 0.14 4.56 10.83 83.96 0.91 5.47 16 22 C 0.13 5.74 7.12 22.32 0.16 5.90 16 23 F -0.16 -7.02 15.94 44.97 0.72 -6.30 16 24 C -0.23 -11.22 8.59 22.50 0.19 -11.02 16 25 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 26 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.13 4.01 8.03 -2.91 -0.02 3.99 16 28 H 0.19 5.70 7.86 -2.91 -0.02 5.68 16 29 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.24 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.19 5.48 8.05 -2.91 -0.02 5.45 16 32 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 Total: -1.00 -57.09 292.49 5.87 -51.22 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 1.17 Total: 24.09 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.18 Total: -25.18 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.23 Total: -79.70 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.72 Total: -6.30 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Total: -57.09 5.87 -51.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240428212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.547 kcal (2) G-P(sol) polarization free energy of solvation -57.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds