Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86804 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47234 * 240.00406 * 3 2 1 5 5 H 1.48504 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46857 * 120.00231 * 3 2 1 7 7 C 1.39915 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99977 * 197.79213 * 7 2 1 9 9 C 1.41324 * 120.00265 * 17.78895 * 7 2 1 10 10 C 1.40833 * 120.20128 * 24.65978 * 9 7 2 11 11 C 1.37618 * 120.04316 * 179.97438 * 10 9 7 12 12 C 1.38509 * 120.45368 * 359.76319 * 11 10 9 13 13 C 1.39637 * 120.40812 * 0.51849 * 12 11 10 14 14 C 1.48189 * 120.02667 * 179.73946 * 13 12 11 15 15 C 1.39840 * 126.38386 * 64.69220 * 14 13 12 16 16 N 1.31146 * 108.86868 * 180.02562 * 15 14 13 17 17 N 1.39909 * 109.22954 * 0.02562 * 16 15 14 18 18 C 1.36560 * 132.38909 * 180.26752 * 17 16 15 19 19 C 1.35574 * 119.11834 * 180.17718 * 18 17 16 20 20 C 1.40199 * 119.43096 * 359.50708 * 19 18 17 21 21 N 1.31317 * 120.22974 * 0.27465 * 20 19 18 22 22 C 1.33663 * 120.84282 * 359.97433 * 21 20 19 23 23 C 1.39213 * 119.94541 * 359.45957 * 13 12 11 24 24 F 1.35105 * 120.22141 * 180.25714 * 23 13 12 25 25 H 0.96999 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.97730 * 359.97221 * 10 9 7 27 27 H 1.07997 * 119.76971 * 179.97438 * 11 10 9 28 28 H 1.07994 * 119.79523 * 180.24977 * 12 11 10 29 29 H 1.08004 * 125.56512 * 0.03111 * 15 14 13 30 30 H 1.07996 * 120.44109 * 359.94085 * 18 17 16 31 31 H 1.07996 * 120.28031 * 179.77613 * 19 18 17 32 32 H 1.08000 * 119.87974 * 180.24902 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0494 -1.2342 0.2853 9 6 1.3523 -2.4062 -0.3750 10 6 0.2227 -2.3609 -1.2149 11 6 -0.4131 -3.5261 -1.5780 12 6 0.0526 -4.7500 -1.1266 13 6 1.1674 -4.8165 -0.2883 14 6 1.6549 -6.1300 0.1943 15 6 2.1829 -7.1588 -0.5921 16 7 2.5045 -8.1647 0.1855 17 7 2.2006 -7.8376 1.5114 18 6 2.3432 -8.5222 2.6844 19 6 1.9475 -7.9375 3.8418 20 6 1.4114 -6.6424 3.8112 21 7 1.2892 -6.0042 2.6701 22 6 1.6714 -6.5730 1.5225 23 6 1.8238 -3.6483 0.0890 24 9 2.9060 -3.7066 0.8957 25 1 -0.4849 0.8401 0.0004 26 1 -0.1447 -1.4110 -1.5744 27 1 -1.2792 -3.4862 -2.2219 28 1 -0.4522 -5.6581 -1.4213 29 1 2.3059 -7.1297 -1.6647 30 1 2.7622 -9.5175 2.6896 31 1 2.0483 -8.4632 4.7798 32 1 1.0976 -6.1682 4.7294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240928618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = 71.811829 kcal Electronic energy + Delta-G solvation = -20970.723745 eV Core-core repulsion = 17618.760139 eV Total energy + Delta-G solvation = -3351.963606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.10848 -43.21787 -39.31392 -38.72183 -35.84937 -34.91186 -32.24599 -31.98547 -31.36510 -28.77164 -27.21688 -25.72977 -24.47539 -23.45227 -22.48142 -21.61934 -19.44722 -18.69674 -18.21063 -17.87093 -17.23557 -17.02042 -16.84614 -16.24505 -15.88345 -15.85179 -15.13422 -14.76899 -14.60942 -14.29938 -13.82516 -13.72728 -13.61137 -13.41988 -13.20215 -12.80948 -12.54130 -12.36371 -12.25337 -12.09554 -11.68467 -11.37259 -11.07794 -10.74472 -10.49190 -9.48813 -9.25637 -8.67697 -8.58428 -6.38473 -0.36415 -0.09892 0.83286 0.87966 1.11631 1.36487 1.47389 1.51242 1.60275 2.20295 2.48640 2.66126 3.01992 3.11059 3.55941 3.61001 4.05562 4.07713 4.18963 4.23292 4.48470 4.51230 4.61994 4.72393 4.80868 4.99351 5.12162 5.18565 5.31566 5.36094 5.56461 5.67257 5.81373 6.05486 6.08013 6.22175 6.37878 6.59106 6.76817 6.80822 6.92649 8.29282 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.005015 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.647383 B = 5581.830818 C = 6100.324115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.057 3.943 10 C -0.166 4.166 11 C -0.106 4.106 12 C -0.198 4.198 13 C -0.008 4.008 14 C -0.215 4.215 15 C 0.106 3.894 16 N -0.330 5.330 17 N -0.320 5.320 18 C 0.141 3.859 19 C -0.201 4.201 20 C 0.171 3.829 21 N -0.505 5.505 22 C 0.254 3.746 23 C -0.035 4.035 24 F -0.172 7.172 25 H 0.292 0.708 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.222 0.778 30 H 0.218 0.782 31 H 0.224 0.776 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -13.183 6.286 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.175 4.175 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.054 3.946 10 C -0.186 4.186 11 C -0.124 4.124 12 C -0.217 4.217 13 C -0.010 4.010 14 C -0.228 4.228 15 C -0.071 4.071 16 N -0.154 5.154 17 N -0.091 5.091 18 C 0.008 3.992 19 C -0.224 4.224 20 C -0.011 4.011 21 N -0.218 5.218 22 C 0.025 3.975 23 C -0.055 4.055 24 F -0.151 7.151 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.238 0.762 30 H 0.235 0.765 31 H 0.241 0.759 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.418 -13.389 6.004 14.742 hybrid contribution 0.484 0.994 0.168 1.119 sum 1.902 -12.394 6.173 13.976 Atomic orbital electron populations 1.69848 1.08777 1.30970 1.34707 1.26686 0.95573 1.04216 0.91015 0.85238 0.78895 0.75512 0.79963 1.18277 1.18196 1.18988 1.19571 0.98030 0.92677 1.42423 0.91758 1.17903 0.93731 0.91241 0.91733 1.21197 0.98684 0.98005 1.00719 1.20962 0.99418 0.92085 0.99983 1.20611 0.98634 0.97457 1.04994 1.17657 0.96188 0.88190 0.98927 1.18456 1.16955 0.97756 0.89679 1.24243 0.93130 0.88462 1.01313 1.77517 1.30111 1.23738 0.84028 1.47257 1.40988 1.12906 1.07920 1.23020 0.95717 0.99831 0.80585 1.22435 1.03218 0.96837 0.99950 1.24325 0.88942 0.92132 0.95743 1.68232 1.19801 1.35797 0.97926 1.20597 0.97758 0.84460 0.94682 1.18197 0.91129 0.94730 1.01455 1.91197 1.54055 1.97308 1.72568 0.89668 0.86706 0.85372 0.85709 0.76205 0.76501 0.75943 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.44 10.96 21.82 0.24 -43.20 16 2 C 0.04 2.14 5.14 85.24 0.44 2.58 16 3 Si 0.98 39.68 29.60 68.60 2.03 41.71 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.50 -29.01 8.78 23.44 0.21 -28.80 16 8 H 0.06 3.78 7.73 -2.91 -0.02 3.76 16 9 C 0.06 3.30 5.57 -21.28 -0.12 3.18 16 10 C -0.17 -8.93 8.69 22.76 0.20 -8.73 16 11 C -0.11 -4.92 10.01 22.19 0.22 -4.70 16 12 C -0.20 -8.91 9.78 22.67 0.22 -8.69 16 13 C -0.01 -0.37 5.75 -20.06 -0.12 -0.48 16 14 C -0.22 -9.32 5.22 -19.81 -0.10 -9.42 16 15 C 0.11 3.77 11.92 85.18 1.02 4.78 16 16 N -0.33 -11.15 12.62 -56.88 -0.72 -11.86 16 17 N -0.32 -10.29 3.89 -191.81 -0.75 -11.04 16 18 C 0.14 2.76 11.30 83.34 0.94 3.70 16 19 C -0.20 -2.93 10.05 22.13 0.22 -2.71 16 20 C 0.17 3.96 11.27 85.25 0.96 4.92 16 21 N -0.51 -19.25 10.47 -191.87 -2.01 -21.26 16 22 C 0.25 10.18 7.89 133.54 1.05 11.24 16 23 C -0.03 -1.96 7.28 23.11 0.17 -1.79 16 24 F -0.17 -9.96 16.26 44.97 0.73 -9.23 16 25 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 26 H 0.12 6.27 6.16 -2.91 -0.02 6.25 16 27 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 28 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 29 H 0.22 6.24 8.06 -2.91 -0.02 6.22 16 30 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.22 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -79.24 294.31 6.01 -73.24 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.17 Total: 16.56 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 5.31 Total: -34.92 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -3.23 Total: -87.36 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 0.73 Total: -9.23 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -79.24 6.01 -73.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240928618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.048 kcal (2) G-P(sol) polarization free energy of solvation -79.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds