Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47498 * 275.40947 * 3 2 1 5 5 H 1.48500 * 109.46976 * 35.40706 * 3 2 1 6 6 H 1.48501 * 109.47148 * 155.40490 * 3 2 1 7 7 C 1.39888 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00183 * 341.76864 * 7 2 1 9 9 C 1.41321 * 119.99718 * 161.76462 * 7 2 1 10 10 C 1.40488 * 120.20473 * 330.11762 * 9 7 2 11 11 C 1.38767 * 119.65470 * 179.97438 * 10 9 7 12 12 C 1.48158 * 119.97740 * 179.97438 * 11 10 9 13 13 C 1.39861 * 126.38761 * 309.99862 * 12 11 10 14 14 N 1.31137 * 108.86116 * 180.02562 * 13 12 11 15 15 N 1.39912 * 109.23825 * 0.02562 * 14 13 12 16 16 C 1.36542 * 132.37289 * 180.02562 * 15 14 13 17 17 C 1.35585 * 119.11988 * 180.02562 * 16 15 14 18 18 C 1.40187 * 119.42868 * 0.27032 * 17 16 15 19 19 N 1.31332 * 120.22045 * 359.41417 * 18 17 16 20 20 C 1.33652 * 120.84547 * 0.61709 * 19 18 17 21 21 C 1.39982 * 120.04563 * 0.25442 * 11 10 9 22 22 C 1.38210 * 120.39980 * 359.48220 * 21 11 10 23 23 C 1.38088 * 120.35486 * 0.52111 * 22 21 11 24 24 F 1.35104 * 120.03016 * 179.76320 * 23 22 21 25 25 H 0.97003 * 119.99676 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.16830 * 359.95228 * 10 9 7 27 27 H 1.08004 * 125.57082 * 0.02562 * 13 12 11 28 28 H 1.07999 * 120.44757 * 359.97438 * 16 15 14 29 29 H 1.07994 * 120.28940 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.89095 * 179.72353 * 18 17 16 31 31 H 1.07988 * 119.79885 * 179.74420 * 21 11 10 32 32 H 1.08001 * 119.82090 * 180.25905 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3760 2.1125 -1.3938 5 1 1.5020 2.6170 0.8112 6 1 3.5927 1.4099 0.5827 7 6 2.0081 -1.2115 -0.0005 8 1 1.5088 -2.1234 0.2917 9 6 3.3681 -1.2420 -0.3835 10 6 3.8614 -0.3120 -1.3139 11 6 5.1989 -0.3520 -1.6815 12 6 5.7266 0.6249 -2.6624 13 6 5.1726 0.9298 -3.9099 14 7 5.9162 1.8389 -4.4932 15 7 6.9868 2.1665 -3.6541 16 6 8.0272 3.0406 -3.7884 17 6 8.9337 3.1464 -2.7858 18 6 8.7872 2.3543 -1.6384 19 7 7.7737 1.5259 -1.5320 20 6 6.8746 1.4133 -2.5144 21 6 6.0486 -1.3184 -1.1305 22 6 5.5667 -2.2309 -0.2110 23 6 4.2387 -2.2062 0.1665 24 9 3.7736 -3.1043 1.0623 25 1 -0.4850 0.8401 -0.0004 26 1 3.2029 0.4299 -1.7411 27 1 4.2784 0.4886 -4.3250 28 1 8.1273 3.6392 -4.6818 29 1 9.7637 3.8319 -2.8719 30 1 9.5074 2.4293 -0.8371 31 1 7.0878 -1.3485 -1.4224 32 1 6.2315 -2.9699 0.2114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240931784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = 90.995468 kcal Electronic energy + Delta-G solvation = -20918.709954 eV Core-core repulsion = 17567.578213 eV Total energy + Delta-G solvation = -3351.131741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.33184 -42.17403 -38.17668 -37.34600 -34.18734 -33.55862 -31.06626 -30.82350 -30.37892 -27.37981 -25.17395 -24.78679 -23.25352 -22.21852 -21.28887 -19.85726 -18.05657 -17.51265 -17.02628 -16.41865 -16.16269 -15.93316 -15.13917 -14.74149 -14.42677 -14.12610 -14.02759 -13.50411 -13.16908 -12.98683 -12.73660 -12.57924 -12.03714 -11.95955 -11.72966 -11.59082 -11.09288 -10.81370 -10.72949 -10.34247 -9.96229 -9.79068 -9.72217 -9.49197 -9.15696 -8.08766 -7.76850 -7.02846 -6.97500 -4.50921 0.52517 0.85591 2.09372 2.23261 2.54999 2.82854 3.09942 3.18173 3.32371 3.50946 3.92470 3.96269 4.11551 4.32510 4.43236 4.80609 5.08705 5.21761 5.28779 5.37697 5.60590 5.73654 5.82814 5.93053 6.00941 6.30578 6.43424 6.49904 6.59158 6.81962 7.08059 7.31460 7.41773 7.48848 7.58395 7.70913 7.74303 7.97806 8.31656 8.54874 8.72067 10.03482 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.006099 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.578256 B = 4589.715585 C = 5332.773006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.088 3.912 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.241 1.241 7 C -0.440 4.440 8 H 0.096 0.904 9 C 0.068 3.932 10 C -0.203 4.203 11 C 0.020 3.980 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.316 5.316 15 N -0.318 5.318 16 C 0.160 3.840 17 C -0.231 4.231 18 C 0.163 3.837 19 N -0.440 5.440 20 C 0.251 3.749 21 C -0.187 4.187 22 C -0.114 4.114 23 C -0.008 4.008 24 F -0.157 7.157 25 H 0.286 0.714 26 H 0.109 0.891 27 H 0.202 0.798 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.177 0.823 31 H 0.101 0.899 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.177 7.967 -6.216 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.468 4.468 8 H 0.114 0.886 9 C 0.064 3.936 10 C -0.222 4.222 11 C 0.018 3.982 12 C -0.168 4.168 13 C -0.077 4.077 14 N -0.139 5.139 15 N -0.089 5.089 16 C 0.025 3.975 17 C -0.255 4.255 18 C -0.023 4.023 19 N -0.150 5.150 20 C 0.025 3.975 21 C -0.207 4.207 22 C -0.133 4.133 23 C -0.028 4.028 24 F -0.136 7.136 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.218 0.782 28 H 0.192 0.808 29 H 0.181 0.819 30 H 0.194 0.806 31 H 0.120 0.880 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.591 8.080 -6.601 17.937 hybrid contribution 0.224 0.770 0.102 0.808 sum 14.815 8.850 -6.499 18.440 Atomic orbital electron populations 1.69702 1.08010 1.30322 1.34578 1.26078 0.94694 1.01435 0.90900 0.86423 0.81621 0.79972 0.79089 1.19466 1.21608 1.16449 1.19362 0.92726 0.96493 1.38199 0.88636 1.17577 0.93240 0.91211 0.91565 1.20860 0.94278 1.04064 1.03016 1.17476 0.92969 0.93036 0.94674 1.18669 0.95837 1.04598 0.97739 1.24101 0.98300 0.92868 0.92403 1.77660 0.98651 1.22099 1.15533 1.47000 1.18904 1.27875 1.15129 1.21952 0.84580 0.90417 1.00556 1.21759 1.02446 1.05943 0.95383 1.23389 0.93517 0.88950 0.96418 1.68165 1.02140 1.19501 1.25161 1.20514 0.97237 0.95483 0.84251 1.20166 0.98048 0.99074 1.03405 1.20502 0.93615 0.99921 0.99258 1.17838 0.92181 0.96086 0.96736 1.91307 1.89612 1.66360 1.66341 0.90319 0.87372 0.78151 0.80799 0.81925 0.80631 0.88039 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.51 13.93 55.54 0.77 -20.74 16 2 C 0.09 2.35 5.40 -17.34 -0.09 2.26 16 3 Si 0.90 21.27 24.52 -169.99 -4.17 17.10 16 4 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.94 6.86 56.52 0.39 -5.55 16 7 C -0.44 -12.18 9.25 -37.79 -0.35 -12.53 16 8 H 0.10 2.81 7.97 -52.49 -0.42 2.39 16 9 C 0.07 1.76 5.11 -106.80 -0.55 1.21 16 10 C -0.20 -4.88 6.82 -38.54 -0.26 -5.15 16 11 C 0.02 0.44 5.76 -104.97 -0.60 -0.16 16 12 C -0.16 -3.07 5.64 -104.53 -0.59 -3.66 16 13 C 0.10 1.76 11.85 -17.24 -0.20 1.55 16 14 N -0.32 -5.27 12.62 30.67 0.39 -4.88 16 15 N -0.32 -4.92 3.89 -11.98 -0.05 -4.96 16 16 C 0.16 1.65 11.30 -16.40 -0.19 1.46 16 17 C -0.23 -1.85 10.05 -39.80 -0.40 -2.25 16 18 C 0.16 1.72 11.28 -17.03 -0.19 1.53 16 19 N -0.44 -7.12 10.47 -12.00 -0.13 -7.25 16 20 C 0.25 4.51 7.82 -155.44 -1.22 3.29 16 21 C -0.19 -4.00 9.72 -38.94 -0.38 -4.38 16 22 C -0.11 -2.49 9.99 -39.65 -0.40 -2.89 16 23 C -0.01 -0.20 7.31 -38.56 -0.28 -0.49 16 24 F -0.16 -3.93 16.76 2.25 0.04 -3.90 16 25 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 26 H 0.11 2.59 4.74 -52.48 -0.25 2.34 16 27 H 0.20 2.95 8.06 -52.48 -0.42 2.52 16 28 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -32.40 289.52 -6.85 -39.25 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -2.37 Total: 1.22 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -5.70 Total: -20.21 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.99 Total: -37.83 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.17 Total: 17.10 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.40 -6.85 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240931784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.248 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds