Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86795 * 120.00454 * 2 1 4 4 H 1.48499 * 109.47190 * 274.69408 * 3 2 1 5 5 H 1.48502 * 109.46896 * 34.68852 * 3 2 1 6 6 H 1.48497 * 109.47255 * 154.69032 * 3 2 1 7 7 C 1.39859 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00362 * 197.38868 * 7 2 1 9 9 C 1.40709 * 119.99807 * 17.38035 * 7 2 1 10 10 C 1.40848 * 120.61684 * 24.73214 * 9 7 2 11 11 C 1.36406 * 119.94244 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.34092 * 179.97438 * 11 10 9 13 13 C 1.39179 * 121.31750 * 359.97438 * 11 10 9 14 14 C 1.37633 * 121.28920 * 0.02582 * 13 11 10 15 15 C 1.39742 * 119.93432 * 359.97438 * 14 13 11 16 16 C 1.47199 * 120.62491 * 180.02562 * 15 14 13 17 17 C 1.40430 * 126.50611 * 64.67419 * 16 15 14 18 18 N 1.30867 * 108.80726 * 179.81393 * 17 16 15 19 19 N 1.39892 * 109.48578 * 0.44955 * 18 17 16 20 20 C 1.36461 * 132.26648 * 179.72181 * 19 18 17 21 21 C 1.35757 * 119.11911 * 180.02562 * 20 19 18 22 22 C 1.40019 * 119.38414 * 359.97438 * 21 20 19 23 23 N 1.31513 * 120.16763 * 359.97438 * 22 21 20 24 24 C 1.33323 * 120.87073 * 0.02741 * 23 22 21 25 25 H 0.97003 * 119.99939 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.02547 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.35384 * 179.74288 * 13 11 10 28 28 H 1.07999 * 120.03513 * 179.97438 * 14 13 11 29 29 H 1.07999 * 125.59722 * 359.96640 * 17 16 15 30 30 H 1.08000 * 120.44098 * 359.97438 * 20 19 18 31 31 H 1.08001 * 120.30939 * 179.97438 * 21 20 19 32 32 H 1.08000 * 119.91789 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.3915 2.1036 -1.3954 5 1 1.4938 2.6219 0.7968 6 1 3.5868 1.4134 0.5985 7 6 2.0084 -1.2112 -0.0005 8 1 3.0513 -1.2328 0.2789 9 6 1.3529 -2.4018 -0.3651 10 6 0.2183 -2.3696 -1.1990 11 6 -0.4061 -3.5322 -1.5443 12 9 -1.4938 -3.4871 -2.3444 13 6 0.0548 -4.7638 -1.0886 14 6 1.1585 -4.8563 -0.2716 15 6 1.8388 -3.6985 0.1150 16 6 3.0212 -3.7798 0.9880 17 6 4.2494 -4.3854 0.6768 18 7 5.0558 -4.2535 1.6990 19 7 4.3983 -3.5694 2.7269 20 6 4.7934 -3.1916 3.9772 21 6 3.9191 -2.5238 4.7727 22 6 2.6349 -2.2377 4.2936 23 7 2.2820 -2.6133 3.0837 24 6 3.1338 -3.2695 2.2954 25 1 -0.4850 0.8401 0.0004 26 1 -0.1569 -1.4253 -1.5648 27 1 -0.4665 -5.6643 -1.3783 28 1 1.4984 -5.8226 0.0705 29 1 4.4899 -4.8770 -0.2543 30 1 5.7880 -3.4215 4.3296 31 1 4.2114 -2.2160 5.7658 32 1 1.9326 -1.7065 4.9190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240933892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = 92.329656 kcal Electronic energy + Delta-G solvation = -21201.106531 eV Core-core repulsion = 17850.032645 eV Total energy + Delta-G solvation = -3351.073886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.58045 -41.71092 -37.69629 -36.86939 -33.78571 -33.53976 -30.65156 -30.26544 -29.65701 -27.17538 -25.34662 -24.39391 -22.79266 -21.65622 -21.03449 -19.65743 -17.63226 -17.48345 -16.78539 -15.97787 -15.85151 -15.44873 -14.85119 -14.53118 -14.43259 -14.23180 -13.84253 -13.15691 -12.92661 -12.64011 -12.55315 -12.15990 -12.01224 -11.69567 -11.39962 -11.20460 -10.96228 -10.73398 -10.53544 -10.29265 -9.96111 -9.58934 -9.30049 -9.25099 -9.09315 -7.56960 -7.46394 -7.00614 -6.68967 -4.44033 0.95207 1.28460 2.49458 2.56173 2.81239 2.99552 3.03002 3.15731 3.18089 3.82674 3.97032 4.39046 4.45974 4.55035 4.72540 5.15744 5.42964 5.47552 5.69586 5.75557 5.77095 6.11792 6.21878 6.37930 6.39224 6.51967 6.86472 6.93790 6.97628 7.04688 7.19540 7.52676 7.71135 7.82943 7.93499 7.94771 8.17888 8.25181 8.50118 8.72948 8.84717 10.02786 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.013093 B = 0.008081 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.998194 B = 3464.198073 C = 4832.725422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.418 4.418 8 H 0.076 0.924 9 C 0.157 3.843 10 C -0.210 4.210 11 C 0.117 3.883 12 F -0.171 7.171 13 C -0.291 4.291 14 C -0.042 4.042 15 C -0.156 4.156 16 C -0.106 4.106 17 C 0.081 3.919 18 N -0.327 5.327 19 N -0.318 5.318 20 C 0.149 3.851 21 C -0.229 4.229 22 C 0.146 3.854 23 N -0.413 5.413 24 C 0.251 3.749 25 H 0.284 0.716 26 H 0.128 0.872 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.193 0.807 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 -1.698 7.651 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.446 4.446 8 H 0.094 0.906 9 C 0.153 3.847 10 C -0.230 4.230 11 C 0.097 3.903 12 F -0.150 7.150 13 C -0.311 4.311 14 C -0.061 4.061 15 C -0.158 4.158 16 C -0.119 4.119 17 C -0.096 4.096 18 N -0.152 5.152 19 N -0.090 5.090 20 C 0.014 3.986 21 C -0.253 4.253 22 C -0.040 4.040 23 N -0.122 5.122 24 C 0.024 3.976 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.210 0.790 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.867 -1.760 7.433 10.271 hybrid contribution 0.172 0.894 0.097 0.916 sum 7.039 -0.865 7.530 10.344 Atomic orbital electron populations 1.69872 1.07570 1.29619 1.32397 1.25964 0.94729 1.01448 0.92219 0.86316 0.80575 0.80627 0.79438 1.19004 1.19944 1.18718 1.19313 0.97731 0.90706 1.36853 0.90554 1.18276 0.89016 0.90790 0.86607 1.20887 1.01374 0.96090 1.04695 1.17420 0.84758 0.95181 0.92898 1.91328 1.53656 1.97631 1.72408 1.19947 1.04157 0.94796 1.12218 1.20313 0.94023 0.95859 0.95865 1.18649 0.98812 0.92939 1.05424 1.18313 0.96079 1.06541 0.90923 1.24077 0.90937 0.97359 0.97187 1.77389 1.19982 1.21076 0.96752 1.46868 1.12496 1.38315 1.11326 1.21830 1.00572 0.94581 0.81655 1.21699 0.95777 1.05508 1.02327 1.23298 0.94437 0.94703 0.91586 1.68121 1.31872 1.08463 1.03704 1.20771 0.81640 0.99323 0.95824 0.90485 0.85385 0.88529 0.88554 0.78984 0.81400 0.82494 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.53 10.96 55.54 0.61 -18.92 16 2 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 3 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.42 -10.81 8.37 -38.04 -0.32 -11.12 16 8 H 0.08 2.00 7.31 -52.49 -0.38 1.62 16 9 C 0.16 4.10 5.73 -104.62 -0.60 3.50 16 10 C -0.21 -5.56 8.60 -39.26 -0.34 -5.90 16 11 C 0.12 2.92 7.21 -39.89 -0.29 2.64 16 12 F -0.17 -4.15 17.23 2.25 0.04 -4.11 16 13 C -0.29 -6.74 9.95 -39.45 -0.39 -7.13 16 14 C -0.04 -0.94 9.80 -39.24 -0.38 -1.33 16 15 C -0.16 -3.72 5.96 -102.34 -0.61 -4.33 16 16 C -0.11 -2.32 4.66 -104.47 -0.49 -2.80 16 17 C 0.08 1.52 11.94 -17.14 -0.20 1.31 16 18 N -0.33 -6.04 12.59 30.75 0.39 -5.66 16 19 N -0.32 -5.75 3.88 -11.87 -0.05 -5.79 16 20 C 0.15 1.96 11.30 -16.38 -0.19 1.78 16 21 C -0.23 -2.60 10.05 -39.80 -0.40 -3.00 16 22 C 0.15 2.13 11.28 -17.02 -0.19 1.93 16 23 N -0.41 -8.39 10.46 -11.92 -0.12 -8.52 16 24 C 0.25 5.26 7.57 -155.57 -1.18 4.08 16 25 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 26 H 0.13 3.49 6.18 -52.49 -0.32 3.17 16 27 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.19 2.93 8.06 -52.49 -0.42 2.50 16 30 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -31.11 293.75 -7.79 -38.90 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -2.38 Total: 4.77 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -5.67 Total: -18.57 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.83 Total: -38.89 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.11 -7.79 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240933892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.229 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds