Wall clock time and date at job start Tue Mar 31 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48500 * 109.47622 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47025 * 300.00397 * 3 2 1 6 6 H 1.48500 * 109.47254 * 59.99935 * 3 2 1 7 7 C 1.39866 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99915 * 197.79295 * 7 2 1 9 9 C 1.41335 * 120.00050 * 17.79636 * 7 2 1 10 10 C 1.40884 * 120.14829 * 204.45080 * 9 7 2 11 11 C 1.37606 * 120.04287 * 180.02562 * 10 9 7 12 12 C 1.38692 * 120.35543 * 0.02637 * 11 10 9 13 13 F 1.35103 * 119.84999 * 179.97438 * 12 11 10 14 14 C 1.40154 * 120.30055 * 359.97261 * 12 11 10 15 15 C 1.48148 * 120.02308 * 179.97438 * 14 12 11 16 16 C 1.39869 * 126.38856 * 244.97631 * 15 14 12 17 17 N 1.31132 * 108.86657 * 180.02562 * 16 15 14 18 18 N 1.39910 * 109.24069 * 359.97438 * 17 16 15 19 19 C 1.36551 * 132.38209 * 180.23390 * 18 17 16 20 20 C 1.35580 * 119.11777 * 180.22471 * 19 18 17 21 21 C 1.40181 * 119.43227 * 359.50402 * 20 19 18 22 22 N 1.31331 * 120.22439 * 0.26997 * 21 20 19 23 23 C 1.33642 * 120.83988 * 359.97438 * 22 21 20 24 24 C 1.38753 * 119.95157 * 0.25725 * 14 12 11 25 25 H 0.96993 * 120.00494 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.98151 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.82705 * 180.02562 * 11 10 9 28 28 H 1.08000 * 125.57168 * 0.02562 * 16 15 14 29 29 H 1.07993 * 120.44211 * 359.97400 * 19 18 17 30 30 H 1.08004 * 120.28155 * 179.77499 * 20 19 18 31 31 H 1.08004 * 119.88715 * 180.25419 * 21 20 19 32 32 H 1.08006 * 120.17996 * 179.74581 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2112 -0.0005 8 1 3.0495 -1.2337 0.2853 9 6 1.3523 -2.4058 -0.3752 10 6 1.8279 -3.6490 0.0866 11 6 1.1880 -4.8107 -0.2799 12 6 0.0737 -4.7669 -1.1046 13 9 -0.5464 -5.9139 -1.4585 14 6 -0.4120 -3.5383 -1.5724 15 6 -1.6024 -3.4987 -2.4534 16 6 -1.6347 -3.0749 -3.7859 17 7 -2.8621 -3.1818 -4.2352 18 7 -3.6836 -3.6798 -3.2181 19 6 -5.0165 -3.9731 -3.1721 20 6 -5.5479 -4.4490 -2.0192 21 6 -4.7184 -4.6392 -0.9053 22 7 -3.4386 -4.3535 -0.9776 23 6 -2.9053 -3.8792 -2.1075 24 6 0.2264 -2.3595 -1.2145 25 1 -0.4850 0.8399 0.0004 26 1 2.6954 -3.6902 0.7287 27 1 1.5553 -5.7617 0.0764 28 1 -0.7874 -2.7179 -4.3524 29 1 -5.6398 -3.8240 -4.0413 30 1 -6.6005 -4.6836 -1.9608 31 1 -5.1332 -5.0218 0.0156 32 1 -0.1423 -1.4109 -1.5763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240935656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:42 Heat of formation + Delta-G solvation = 90.396104 kcal Electronic energy + Delta-G solvation = -21018.376108 eV Core-core repulsion = 17667.218377 eV Total energy + Delta-G solvation = -3351.157731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.33556 -41.92635 -37.89589 -37.12351 -34.01382 -33.44317 -30.93691 -30.70727 -29.31954 -27.42243 -25.00314 -24.57735 -23.11032 -21.94964 -20.91715 -19.88408 -17.91777 -17.27453 -16.88669 -16.12644 -15.84140 -15.72192 -15.25268 -14.45674 -14.29439 -14.09226 -13.91860 -13.30494 -12.91492 -12.78882 -12.41994 -12.35153 -11.93496 -11.85344 -11.28466 -11.17155 -11.05546 -10.97286 -10.73121 -10.27874 -9.90593 -9.56810 -9.52129 -9.27054 -9.15065 -7.85297 -7.34038 -7.05336 -6.79174 -4.37021 0.75731 1.08977 2.30492 2.55294 2.78854 3.00361 3.06640 3.11118 3.14209 3.73424 3.90851 4.16138 4.31188 4.49986 4.55278 4.99309 5.27815 5.47890 5.50480 5.57174 5.80296 5.93060 6.08191 6.15258 6.24016 6.55398 6.72874 6.87538 6.95748 7.09616 7.18921 7.44076 7.69909 7.71613 7.85955 7.96488 7.98827 8.18376 8.52923 8.81937 8.86225 10.14463 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.005695 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.393470 B = 4915.246978 C = 5653.073854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.101 3.899 10 C -0.201 4.201 11 C -0.122 4.122 12 C -0.018 4.018 13 F -0.169 7.169 14 C -0.025 4.025 15 C -0.144 4.144 16 C 0.100 3.900 17 N -0.320 5.320 18 N -0.317 5.317 19 C 0.157 3.843 20 C -0.231 4.231 21 C 0.159 3.841 22 N -0.433 5.433 23 C 0.258 3.742 24 C -0.121 4.121 25 H 0.281 0.719 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.199 0.801 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -3.975 -4.036 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.098 3.902 10 C -0.221 4.221 11 C -0.141 4.141 12 C -0.038 4.038 13 F -0.149 7.149 14 C -0.027 4.027 15 C -0.157 4.157 16 C -0.078 4.078 17 N -0.145 5.145 18 N -0.089 5.089 19 C 0.022 3.978 20 C -0.255 4.255 21 C -0.027 4.027 22 N -0.143 5.143 23 C 0.032 3.968 24 C -0.141 4.141 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.215 0.785 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.192 0.808 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.368 -3.672 -4.516 11.029 hybrid contribution -0.017 0.577 0.068 0.581 sum -9.385 -3.095 -4.448 10.837 Atomic orbital electron populations 1.69855 1.07549 1.29237 1.34885 1.25918 0.94707 1.01393 0.92277 0.86274 0.81031 0.80955 0.78579 1.18298 1.19701 1.20016 1.19555 0.98193 0.90995 1.39983 0.90085 1.17548 0.91204 0.92269 0.89154 1.20879 1.03400 0.91973 1.05818 1.20424 0.95936 0.98168 0.99545 1.17290 0.97975 0.80271 1.08231 1.91273 1.82964 1.48990 1.91645 1.17595 0.93503 0.92600 0.98984 1.18459 0.90805 1.11627 0.94776 1.23989 0.94678 0.95436 0.93665 1.77592 1.01981 1.25932 1.08953 1.46955 1.07316 1.42859 1.11743 1.21896 0.81509 0.94237 1.00202 1.21728 1.02859 1.07663 0.93278 1.23346 0.88281 0.92572 0.98513 1.68143 1.13312 1.11074 1.21737 1.20509 0.92553 1.00435 0.83353 1.21297 0.98066 0.95313 0.99391 0.90850 0.88017 0.88103 0.78468 0.80977 0.82086 0.80835 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.23 10.96 55.54 0.61 -19.63 16 2 C 0.08 1.84 5.13 -17.35 -0.09 1.75 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.46 -11.76 9.04 -37.80 -0.34 -12.10 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 9 C 0.10 2.63 5.57 -106.86 -0.60 2.03 16 10 C -0.20 -4.86 9.78 -38.81 -0.38 -5.24 16 11 C -0.12 -2.84 9.99 -39.64 -0.40 -3.24 16 12 C -0.02 -0.43 7.30 -38.69 -0.28 -0.71 16 13 F -0.17 -4.10 16.81 2.25 0.04 -4.06 16 14 C -0.02 -0.60 5.75 -104.92 -0.60 -1.21 16 15 C -0.14 -3.21 5.21 -104.53 -0.54 -3.75 16 16 C 0.10 1.91 11.92 -17.24 -0.21 1.71 16 17 N -0.32 -5.93 12.62 30.67 0.39 -5.54 16 18 N -0.32 -5.63 3.89 -11.98 -0.05 -5.67 16 19 C 0.16 1.94 11.30 -16.40 -0.19 1.76 16 20 C -0.23 -2.37 10.05 -39.80 -0.40 -2.77 16 21 C 0.16 2.11 11.27 -17.04 -0.19 1.92 16 22 N -0.43 -8.41 10.47 -12.00 -0.13 -8.53 16 23 C 0.26 5.35 7.89 -155.44 -1.23 4.12 16 24 C -0.12 -3.12 8.41 -38.54 -0.32 -3.44 16 25 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 27 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.20 3.15 8.06 -52.49 -0.42 2.72 16 29 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.13 3.37 6.17 -52.48 -0.32 3.05 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -32.14 295.02 -7.90 -40.04 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -2.41 Total: 4.90 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -5.77 Total: -19.17 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.82 Total: -39.37 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.14 -7.90 -40.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240935656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.432 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds