Wall clock time and date at job start Tue Mar 31 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86793 * 120.00241 * 2 1 4 4 H 1.48504 * 109.46908 * 90.00403 * 3 2 1 5 5 H 1.48495 * 109.47210 * 209.99734 * 3 2 1 6 6 H 1.48493 * 109.47511 * 330.00145 * 3 2 1 7 7 C 1.39939 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00228 * 17.83837 * 7 2 1 9 9 C 1.40899 * 120.00044 * 197.84395 * 7 2 1 10 10 C 1.40976 * 120.12552 * 28.85578 * 9 7 2 11 11 C 1.36141 * 119.90363 * 180.02562 * 10 9 7 12 12 C 1.40105 * 120.17781 * 0.02562 * 11 10 9 13 13 C 1.47828 * 119.87107 * 180.02562 * 12 11 10 14 14 C 1.40764 * 119.91977 * 359.72715 * 13 12 11 15 15 N 1.30530 * 122.38641 * 179.65917 * 14 13 12 16 16 C 1.34367 * 121.57266 * 0.64387 * 15 14 13 17 17 N 1.31991 * 134.10042 * 179.68105 * 16 15 14 18 18 N 1.39882 * 109.16404 * 179.97438 * 17 16 15 19 19 H 0.97007 * 124.99186 * 180.02562 * 18 17 16 20 20 C 1.33865 * 110.02244 * 359.97438 * 18 17 16 21 21 C 1.38521 * 107.74263 * 0.02562 * 20 18 17 22 22 C 1.38839 * 119.91832 * 179.97438 * 13 12 11 23 23 C 1.39888 * 120.25816 * 359.97438 * 12 11 10 24 24 C 1.36494 * 120.09092 * 359.76551 * 23 12 11 25 25 F 1.35099 * 120.08602 * 180.27495 * 24 23 12 26 26 H 0.97000 * 120.00434 * 175.43734 * 1 2 3 27 27 H 1.08003 * 120.04623 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.90868 * 179.97438 * 11 10 9 29 29 H 1.08001 * 118.80521 * 359.97438 * 14 13 12 30 30 H 1.07999 * 126.13030 * 180.02562 * 20 18 17 31 31 H 1.07992 * 121.05787 * 0.02562 * 22 13 12 32 32 H 1.08008 * 119.95225 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4902 2.0462 1.4001 5 1 3.5401 1.4400 -0.7000 6 1 1.4402 2.6526 -0.7000 7 6 2.0082 -1.2120 -0.0005 8 1 1.5070 -2.1247 -0.2875 9 6 3.3663 -1.2416 0.3733 10 6 3.8700 -0.2919 1.2853 11 6 5.1832 -0.3243 1.6430 12 6 6.0353 -1.2987 1.1069 13 6 7.4599 -1.3281 1.5005 14 6 7.9574 -0.3739 2.4080 15 7 9.2045 -0.3592 2.7934 16 6 10.0941 -1.2542 2.3317 17 7 11.3806 -1.4623 2.5407 18 7 11.7981 -2.5587 1.7790 19 1 12.7018 -2.9111 1.7600 20 6 10.7675 -3.0510 1.0809 21 6 9.6532 -2.2820 1.3743 22 6 8.3051 -2.2935 0.9702 23 6 5.5430 -2.2445 0.2014 24 6 4.2271 -2.2252 -0.1606 25 9 3.7506 -3.1421 -1.0309 26 1 -0.4851 -0.8373 -0.0668 27 1 3.2151 0.4604 1.6996 28 1 5.5692 0.4035 2.3414 29 1 7.2817 0.3699 2.8035 30 1 10.7989 -3.8962 0.4094 31 1 7.9398 -3.0297 0.2696 32 1 6.2042 -2.9938 -0.2086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241424848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:58 Heat of formation + Delta-G solvation = 72.716077 kcal Electronic energy + Delta-G solvation = -20383.985758 eV Core-core repulsion = 17032.061363 eV Total energy + Delta-G solvation = -3351.924395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.54716 -41.30006 -38.61686 -37.22366 -34.31747 -32.85337 -31.25820 -30.73106 -29.71117 -28.63024 -25.33425 -24.59153 -22.42793 -21.67866 -20.76454 -20.19364 -18.51167 -18.26580 -17.33664 -16.61493 -15.66651 -15.20669 -15.16499 -14.56087 -14.43755 -14.36856 -14.07141 -13.48103 -13.36078 -13.05353 -12.74413 -12.67330 -12.19900 -11.84092 -11.51128 -11.24985 -10.97748 -10.89646 -10.64905 -10.21841 -10.05084 -9.69831 -9.30652 -8.97832 -8.95565 -8.41682 -7.89715 -7.68176 -7.17236 -4.74559 0.49174 1.50419 2.28325 2.39523 2.51664 2.69844 3.06488 3.22700 3.41204 3.81724 4.01203 4.05275 4.42213 4.43081 5.01493 5.08138 5.11589 5.18233 5.28978 5.48948 5.63224 5.71597 5.93952 6.02156 6.29077 6.35564 6.50294 6.64423 6.77539 6.94287 7.03859 7.18265 7.24005 7.42844 7.47383 7.48856 7.61740 8.06166 8.18017 8.22395 8.40478 9.68779 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.004217 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.656998 B = 6638.760577 C = 7361.415560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.040 3.960 3 Si 1.073 2.927 4 H -0.270 1.270 5 H -0.258 1.258 6 H -0.286 1.286 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.075 3.925 10 C -0.231 4.231 11 C -0.056 4.056 12 C -0.174 4.174 13 C -0.077 4.077 14 C 0.199 3.801 15 N -0.478 5.478 16 C 0.253 3.747 17 N -0.299 5.299 18 N -0.419 5.419 19 H 0.444 0.556 20 C 0.079 3.921 21 C -0.234 4.234 22 C -0.044 4.044 23 C -0.087 4.087 24 C -0.018 4.018 25 F -0.159 7.159 26 H 0.291 0.709 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.167 0.833 30 H 0.189 0.811 31 H 0.133 0.867 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.069 -3.673 0.455 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.182 4.182 3 Si 0.898 3.102 4 H -0.197 1.197 5 H -0.182 1.182 6 H -0.213 1.213 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.071 3.929 10 C -0.250 4.250 11 C -0.074 4.074 12 C -0.176 4.176 13 C -0.081 4.081 14 C 0.014 3.986 15 N -0.190 5.190 16 C -0.008 4.008 17 N -0.131 5.131 18 N -0.121 5.121 19 H 0.288 0.712 20 C -0.080 4.080 21 C -0.246 4.246 22 C -0.072 4.072 23 C -0.107 4.107 24 C -0.038 4.038 25 F -0.138 7.138 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.184 0.816 30 H 0.206 0.794 31 H 0.150 0.850 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.264 -1.127 1.724 15.402 hybrid contribution -0.632 -3.269 -1.302 3.575 sum 14.632 -4.396 0.423 15.284 Atomic orbital electron populations 1.70540 1.08113 1.33614 1.28898 1.27541 0.95622 1.04811 0.90260 0.83583 0.75790 0.72471 0.78357 1.19654 1.18222 1.21257 1.20763 0.94944 0.97356 1.37681 0.89742 1.17833 0.93191 0.91032 0.90876 1.20656 0.95952 1.04496 1.03899 1.20487 0.93234 0.96195 0.97488 1.17535 0.90705 1.02229 1.07130 1.19408 0.94100 0.96239 0.98307 1.23215 0.90172 0.94853 0.90362 1.67316 1.02030 1.23400 1.26219 1.21348 0.91715 0.93052 0.94648 1.77615 1.10980 1.05201 1.19329 1.46277 1.11243 1.22882 1.31661 0.71156 1.22670 0.87586 0.99666 0.98074 1.20343 0.95727 1.01818 1.06745 1.20848 0.89555 0.98172 0.98606 1.20357 0.93589 0.98625 0.98084 1.17339 0.92205 0.95732 0.98514 1.91312 1.89253 1.65193 1.68072 0.89700 0.86544 0.87428 0.81641 0.79443 0.84974 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.79 13.66 55.55 0.76 -19.03 16 2 C 0.04 0.97 5.41 -17.33 -0.09 0.88 16 3 Si 1.07 22.22 24.90 -169.99 -4.23 17.99 16 4 H -0.27 -5.16 6.43 56.52 0.36 -4.80 16 5 H -0.26 -5.31 7.04 56.52 0.40 -4.91 16 6 H -0.29 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.48 -12.21 9.11 -37.94 -0.35 -12.56 16 8 H 0.08 2.26 7.94 -52.48 -0.42 1.84 16 9 C 0.07 1.79 5.14 -106.73 -0.55 1.24 16 10 C -0.23 -4.99 7.20 -39.30 -0.28 -5.27 16 11 C -0.06 -1.06 9.35 -39.64 -0.37 -1.43 16 12 C -0.17 -3.27 5.90 -104.66 -0.62 -3.89 16 13 C -0.08 -1.29 5.88 -104.80 -0.62 -1.91 16 14 C 0.20 3.23 10.52 -17.15 -0.18 3.05 16 15 N -0.48 -8.47 10.42 -11.04 -0.12 -8.59 16 16 C 0.25 4.34 8.60 -156.39 -1.34 2.99 16 17 N -0.30 -4.64 12.68 31.96 0.41 -4.24 16 18 N -0.42 -4.24 7.17 30.87 0.22 -4.01 16 19 H 0.44 2.43 8.96 -182.76 -1.64 0.79 16 20 C 0.08 0.79 12.09 -16.56 -0.20 0.59 16 21 C -0.23 -3.41 6.33 -105.20 -0.67 -4.08 16 22 C -0.04 -0.67 9.58 -38.41 -0.37 -1.03 16 23 C -0.09 -1.73 9.32 -39.59 -0.37 -2.10 16 24 C -0.02 -0.41 7.25 -39.09 -0.28 -0.70 16 25 F -0.16 -3.72 16.74 2.25 0.04 -3.68 16 26 H 0.29 7.08 8.73 -40.82 -0.36 6.73 16 27 H 0.12 2.44 4.40 -52.48 -0.23 2.21 16 28 H 0.11 1.67 6.12 -52.49 -0.32 1.35 16 29 H 0.17 2.26 6.08 -52.49 -0.32 1.94 16 30 H 0.19 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.76 6.21 -52.49 -0.33 1.43 16 32 H 0.11 1.87 6.18 -52.48 -0.32 1.54 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -30.08 280.51 -8.18 -38.26 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.19 Total: 3.29 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -6.29 Total: -24.22 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 1.27 Total: -35.87 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.23 Total: 17.99 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.08 -8.18 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241424848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.975 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds