Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00089 * 2 1 4 4 H 1.48502 * 109.46758 * 275.36600 * 3 2 1 5 5 H 1.48497 * 109.47346 * 35.36913 * 3 2 1 6 6 H 1.48496 * 109.46990 * 155.37151 * 3 2 1 7 7 C 1.39992 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99865 * 342.52702 * 7 2 1 9 9 C 1.40807 * 120.00003 * 162.52543 * 7 2 1 10 10 C 1.40741 * 120.32764 * 329.14767 * 9 7 2 11 11 C 1.37573 * 119.85675 * 180.32035 * 10 9 7 12 12 F 1.35101 * 119.73679 * 179.97438 * 11 10 9 13 13 C 1.39254 * 120.52480 * 359.93219 * 11 10 9 14 14 C 1.37903 * 120.66675 * 0.04559 * 13 11 10 15 15 C 1.39283 * 120.12563 * 0.02562 * 14 13 11 16 16 C 1.47674 * 120.26150 * 179.97438 * 15 14 13 17 17 C 1.40816 * 119.92876 * 129.69944 * 16 15 14 18 18 N 1.30518 * 122.37575 * 179.63830 * 17 16 15 19 19 C 1.34375 * 121.58710 * 0.68900 * 18 17 16 20 20 N 1.31980 * 134.09325 * 179.66694 * 19 18 17 21 21 N 1.39883 * 109.17769 * 179.97438 * 20 19 18 22 22 H 0.97003 * 124.99408 * 179.97438 * 21 20 19 23 23 C 1.33872 * 110.01574 * 0.02562 * 21 20 19 24 24 C 1.38530 * 107.73895 * 359.97438 * 23 21 20 25 25 C 1.38932 * 119.92680 * 309.97775 * 16 15 14 26 26 H 0.96998 * 119.99459 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.06769 * 0.25271 * 10 9 7 28 28 H 1.08005 * 119.66516 * 180.02562 * 13 11 10 29 29 H 1.07999 * 119.93198 * 179.97438 * 14 13 11 30 30 H 1.08002 * 118.81168 * 0.02562 * 17 16 15 31 31 H 1.07999 * 126.12928 * 180.02562 * 23 21 20 32 32 H 1.08003 * 121.05585 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3763 2.1118 -1.3940 5 1 1.5011 2.6173 0.8104 6 1 3.5919 1.4100 0.5834 7 6 2.0082 -1.2124 0.0005 8 1 1.5055 -2.1260 0.2818 9 6 3.3675 -1.2407 -0.3656 10 6 3.8707 -0.3180 -1.3017 11 6 5.1991 -0.3587 -1.6574 12 9 5.6794 0.5279 -2.5565 13 6 6.0526 -1.3058 -1.0973 14 6 5.5826 -2.2198 -0.1778 15 6 4.2423 -2.2043 0.2009 16 6 3.7357 -3.1820 1.1849 17 6 2.9860 -2.7405 2.2921 18 7 2.5096 -3.5631 3.1864 19 6 2.7209 -4.8878 3.1077 20 7 2.3720 -5.9193 3.8535 21 7 2.8776 -7.0915 3.2817 22 1 2.7567 -7.9837 3.6429 23 6 3.5538 -6.8013 2.1634 24 6 3.5017 -5.4288 1.9829 25 6 4.0047 -4.5350 1.0193 26 1 -0.4849 0.8401 -0.0004 27 1 3.2152 0.4197 -1.7406 28 1 7.0931 -1.3249 -1.3862 29 1 6.2549 -2.9494 0.2487 30 1 2.7931 -1.6835 2.4019 31 1 4.0502 -7.5101 1.5173 32 1 4.5816 -4.8894 0.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241424993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = 74.295848 kcal Electronic energy + Delta-G solvation = -20850.455562 eV Core-core repulsion = 17498.599671 eV Total energy + Delta-G solvation = -3351.855891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.02297 -41.06169 -38.47145 -36.92719 -33.86514 -32.73715 -31.07168 -30.58337 -30.23427 -27.61299 -25.46411 -24.62996 -22.44764 -21.64295 -20.48581 -20.08512 -18.11844 -17.85247 -17.06924 -16.37836 -15.64597 -15.22811 -14.95500 -14.82636 -14.68030 -14.61696 -13.78449 -13.27899 -13.20075 -12.84602 -12.44089 -12.41515 -12.12621 -11.95743 -11.58516 -11.04365 -10.99700 -10.86845 -10.61295 -10.25110 -10.05744 -9.89382 -9.33812 -8.72028 -8.63146 -7.98846 -7.93830 -7.17036 -7.15116 -4.73029 0.77645 1.84635 2.34833 2.42589 2.72896 2.78705 3.02008 3.11593 3.20621 3.82787 4.19913 4.31826 4.42439 4.62540 5.06263 5.27544 5.31598 5.39184 5.53071 5.66119 5.80191 5.90596 6.03268 6.23054 6.36844 6.52326 6.60017 6.77307 6.87326 7.04031 7.15285 7.22141 7.25494 7.39096 7.56353 7.74035 7.86324 8.11260 8.35497 8.52466 8.56808 9.82612 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.006030 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.417516 B = 4642.106670 C = 5817.378814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.085 3.915 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.427 4.427 8 H 0.101 0.899 9 C 0.124 3.876 10 C -0.269 4.269 11 C 0.137 3.863 12 F -0.162 7.162 13 C -0.280 4.280 14 C -0.034 4.034 15 C -0.168 4.168 16 C -0.073 4.073 17 C 0.232 3.768 18 N -0.489 5.489 19 C 0.264 3.736 20 N -0.303 5.303 21 N -0.424 5.424 22 H 0.442 0.558 23 C 0.081 3.919 24 C -0.245 4.245 25 C -0.029 4.029 26 H 0.291 0.709 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -8.521 1.385 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.454 4.454 8 H 0.118 0.882 9 C 0.120 3.880 10 C -0.288 4.288 11 C 0.118 3.882 12 F -0.141 7.141 13 C -0.299 4.299 14 C -0.052 4.052 15 C -0.170 4.170 16 C -0.077 4.077 17 C 0.047 3.953 18 N -0.201 5.201 19 C 0.003 3.997 20 N -0.136 5.136 21 N -0.125 5.125 22 H 0.286 0.714 23 C -0.078 4.078 24 C -0.257 4.257 25 C -0.057 4.057 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.189 0.811 31 H 0.203 0.797 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.284 -8.639 3.272 10.642 hybrid contribution 1.079 0.301 -1.647 1.992 sum 6.363 -8.338 1.625 10.613 Atomic orbital electron populations 1.69675 1.08237 1.30953 1.31614 1.26262 0.94772 1.01937 0.90798 0.86372 0.81580 0.79619 0.79390 1.19295 1.21156 1.16227 1.19505 0.92515 0.96361 1.37047 0.88153 1.17356 0.92675 0.89202 0.88746 1.20951 0.93871 1.07572 1.06452 1.17642 0.92636 0.88761 0.89208 1.91369 1.89046 1.67468 1.66234 1.20198 0.98772 1.02868 1.08109 1.20505 0.94053 0.96046 0.94629 1.18361 0.92851 1.02703 1.03074 1.19331 0.99754 0.92531 0.96069 1.23404 0.86200 0.99444 0.86202 1.67430 1.23772 0.99375 1.29568 1.21459 0.95016 0.91576 0.91637 1.77612 1.25864 0.89706 1.20397 1.46266 1.38236 1.09692 1.18306 0.71368 1.22633 0.97820 0.96285 0.91085 1.20372 1.10122 0.93084 1.02110 1.20971 0.97388 0.91159 0.96157 0.89838 0.86846 0.87476 0.87545 0.81142 0.79669 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.38 13.93 55.55 0.77 -18.61 16 2 C 0.09 2.04 5.41 -17.32 -0.09 1.94 16 3 Si 0.91 19.33 24.52 -169.99 -4.17 15.16 16 4 H -0.27 -5.68 6.73 56.52 0.38 -5.30 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.24 -5.19 6.85 56.52 0.39 -4.80 16 7 C -0.43 -10.35 7.47 -37.95 -0.28 -10.63 16 8 H 0.10 2.61 7.04 -52.48 -0.37 2.24 16 9 C 0.12 2.83 5.08 -106.56 -0.54 2.29 16 10 C -0.27 -6.11 7.12 -38.88 -0.28 -6.39 16 11 C 0.14 2.93 7.28 -39.45 -0.29 2.64 16 12 F -0.16 -3.39 17.26 2.25 0.04 -3.35 16 13 C -0.28 -5.42 10.00 -39.33 -0.39 -5.81 16 14 C -0.03 -0.63 9.49 -39.32 -0.37 -1.00 16 15 C -0.17 -3.44 5.51 -104.24 -0.57 -4.01 16 16 C -0.07 -1.41 4.92 -104.81 -0.52 -1.93 16 17 C 0.23 4.72 9.18 -17.14 -0.16 4.56 16 18 N -0.49 -10.36 10.42 -11.03 -0.11 -10.48 16 19 C 0.26 5.19 8.60 -156.40 -1.34 3.84 16 20 N -0.30 -5.37 12.68 31.97 0.41 -4.96 16 21 N -0.42 -5.01 7.17 30.88 0.22 -4.79 16 22 H 0.44 3.11 8.96 -182.76 -1.64 1.47 16 23 C 0.08 0.93 12.10 -16.55 -0.20 0.73 16 24 C -0.24 -4.01 6.33 -105.20 -0.67 -4.68 16 25 C -0.03 -0.48 9.69 -38.38 -0.37 -0.86 16 26 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 27 H 0.11 2.61 4.80 -52.48 -0.25 2.36 16 28 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.11 1.67 8.03 -52.49 -0.42 1.25 16 30 H 0.17 3.44 7.27 -52.49 -0.38 3.06 16 31 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.83 8.05 -52.48 -0.42 1.41 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -29.34 283.41 -8.15 -37.49 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.50 Total: 4.57 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -6.08 Total: -19.30 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.29 Total: -38.84 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.16 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.34 -8.15 -37.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241424993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.786 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds