Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00089 * 2 1 4 4 H 1.48502 * 109.46758 * 275.36600 * 3 2 1 5 5 H 1.48497 * 109.47346 * 35.36913 * 3 2 1 6 6 H 1.48496 * 109.46990 * 155.37151 * 3 2 1 7 7 C 1.39992 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99865 * 342.52702 * 7 2 1 9 9 C 1.40807 * 120.00003 * 162.52543 * 7 2 1 10 10 C 1.40741 * 120.32764 * 329.14767 * 9 7 2 11 11 C 1.37573 * 119.85675 * 180.32035 * 10 9 7 12 12 F 1.35101 * 119.73679 * 179.97438 * 11 10 9 13 13 C 1.39254 * 120.52480 * 359.93219 * 11 10 9 14 14 C 1.37903 * 120.66675 * 0.04559 * 13 11 10 15 15 C 1.39283 * 120.12563 * 0.02562 * 14 13 11 16 16 C 1.47674 * 120.26150 * 179.97438 * 15 14 13 17 17 C 1.40816 * 119.92876 * 129.69944 * 16 15 14 18 18 N 1.30518 * 122.37575 * 179.63830 * 17 16 15 19 19 C 1.34375 * 121.58710 * 0.68900 * 18 17 16 20 20 N 1.31980 * 134.09325 * 179.66694 * 19 18 17 21 21 N 1.39883 * 109.17769 * 179.97438 * 20 19 18 22 22 H 0.97003 * 124.99408 * 179.97438 * 21 20 19 23 23 C 1.33872 * 110.01574 * 0.02562 * 21 20 19 24 24 C 1.38530 * 107.73895 * 359.97438 * 23 21 20 25 25 C 1.38932 * 119.92680 * 309.97775 * 16 15 14 26 26 H 0.96998 * 119.99459 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.06769 * 0.25271 * 10 9 7 28 28 H 1.08005 * 119.66516 * 180.02562 * 13 11 10 29 29 H 1.07999 * 119.93198 * 179.97438 * 14 13 11 30 30 H 1.08002 * 118.81168 * 0.02562 * 17 16 15 31 31 H 1.07999 * 126.12928 * 180.02562 * 23 21 20 32 32 H 1.08003 * 121.05585 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3763 2.1118 -1.3940 5 1 1.5011 2.6173 0.8104 6 1 3.5919 1.4100 0.5834 7 6 2.0082 -1.2124 0.0005 8 1 1.5055 -2.1260 0.2818 9 6 3.3675 -1.2407 -0.3656 10 6 3.8707 -0.3180 -1.3017 11 6 5.1991 -0.3587 -1.6574 12 9 5.6794 0.5279 -2.5565 13 6 6.0526 -1.3058 -1.0973 14 6 5.5826 -2.2198 -0.1778 15 6 4.2423 -2.2043 0.2009 16 6 3.7357 -3.1820 1.1849 17 6 2.9860 -2.7405 2.2921 18 7 2.5096 -3.5631 3.1864 19 6 2.7209 -4.8878 3.1077 20 7 2.3720 -5.9193 3.8535 21 7 2.8776 -7.0915 3.2817 22 1 2.7567 -7.9837 3.6429 23 6 3.5538 -6.8013 2.1634 24 6 3.5017 -5.4288 1.9829 25 6 4.0047 -4.5350 1.0193 26 1 -0.4849 0.8401 -0.0004 27 1 3.2152 0.4197 -1.7406 28 1 7.0931 -1.3249 -1.3862 29 1 6.2549 -2.9494 0.2487 30 1 2.7931 -1.6835 2.4019 31 1 4.0502 -7.5101 1.5173 32 1 4.5816 -4.8894 0.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241424993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = 55.651251 kcal Electronic energy + Delta-G solvation = -20851.264052 eV Core-core repulsion = 17498.599671 eV Total energy + Delta-G solvation = -3352.664381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.66424 -42.28114 -39.97852 -38.38583 -35.59051 -34.13994 -32.59110 -32.03435 -31.57611 -29.06365 -27.14218 -25.94453 -23.91469 -23.24461 -21.86576 -21.44771 -19.59518 -19.24794 -18.38500 -18.01958 -17.10384 -16.77607 -16.51391 -16.30605 -16.22373 -16.06902 -15.33627 -14.88107 -14.39621 -14.26399 -14.01070 -13.84893 -13.75007 -13.47326 -13.22197 -12.73750 -12.56683 -12.29125 -12.03382 -11.87334 -11.62989 -11.46108 -11.05034 -10.09721 -9.93334 -9.60421 -9.46810 -8.94606 -8.57972 -6.51576 -0.41275 0.31879 0.73885 0.92345 1.27036 1.37863 1.46922 1.52067 1.76702 2.08151 2.51516 2.95202 3.11051 3.39035 3.55108 3.69438 4.11777 4.18854 4.20143 4.30167 4.41039 4.47213 4.53702 4.75641 4.85563 4.97715 5.20971 5.26647 5.38864 5.52441 5.60973 5.63887 5.86028 5.91230 6.18853 6.29366 6.34900 6.49916 6.65566 6.75747 7.19396 8.11881 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.006030 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.417516 B = 4642.106670 C = 5817.378814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.056 3.944 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.451 4.451 8 H 0.067 0.933 9 C 0.109 3.891 10 C -0.286 4.286 11 C 0.118 3.882 12 F -0.161 7.161 13 C -0.256 4.256 14 C -0.031 4.031 15 C -0.152 4.152 16 C -0.117 4.117 17 C 0.220 3.780 18 N -0.532 5.532 19 C 0.233 3.767 20 N -0.351 5.351 21 N -0.397 5.397 22 H 0.466 0.534 23 C 0.145 3.855 24 C -0.282 4.282 25 C 0.013 3.987 26 H 0.295 0.705 27 H 0.101 0.899 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.257 0.743 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.301 -12.116 0.689 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.161 4.161 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.479 4.479 8 H 0.085 0.915 9 C 0.106 3.894 10 C -0.306 4.306 11 C 0.099 3.901 12 F -0.140 7.140 13 C -0.275 4.275 14 C -0.049 4.049 15 C -0.154 4.154 16 C -0.121 4.121 17 C 0.038 3.962 18 N -0.245 5.245 19 C -0.027 4.027 20 N -0.185 5.185 21 N -0.099 5.099 22 H 0.315 0.685 23 C -0.017 4.017 24 C -0.294 4.294 25 C -0.015 4.015 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.273 0.727 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.815 -12.229 2.601 15.298 hybrid contribution 0.218 0.962 -1.382 1.698 sum 9.033 -11.267 1.219 14.492 Atomic orbital electron populations 1.69710 1.09161 1.31624 1.35245 1.26741 0.95128 1.03800 0.90469 0.85714 0.80298 0.77525 0.79209 1.19291 1.20175 1.16977 1.19274 0.93568 0.95389 1.39691 0.91454 1.17503 0.92502 0.90375 0.88987 1.20968 0.94803 1.07824 1.07052 1.17836 0.92543 0.89733 0.89946 1.91369 1.88849 1.67567 1.66176 1.20667 0.99909 1.00784 1.06177 1.20911 0.93469 0.96549 0.94019 1.18616 0.93462 1.01488 1.01879 1.19202 1.02717 0.93869 0.96348 1.23101 0.87196 0.98680 0.87217 1.67231 1.25338 1.01190 1.30774 1.21691 0.96203 0.91304 0.93501 1.77556 1.28182 0.90824 1.21973 1.46369 1.36078 1.09654 1.17848 0.68494 1.23656 0.93493 0.95082 0.89517 1.20714 1.11566 0.95322 1.01815 1.21336 0.94341 0.89864 0.95941 0.89401 0.88094 0.84118 0.83309 0.83324 0.72715 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.46 13.93 21.84 0.30 -44.15 16 2 C 0.06 2.88 5.41 85.27 0.46 3.34 16 3 Si 0.95 41.96 24.52 68.60 1.68 43.64 16 4 H -0.27 -11.62 6.73 99.48 0.67 -10.95 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.25 -10.98 6.85 99.48 0.68 -10.30 16 7 C -0.45 -23.41 7.47 23.32 0.17 -23.24 16 8 H 0.07 3.84 7.04 -2.91 -0.02 3.82 16 9 C 0.11 5.13 5.08 -21.12 -0.11 5.02 16 10 C -0.29 -13.18 7.12 22.72 0.16 -13.02 16 11 C 0.12 4.89 7.28 22.36 0.16 5.05 16 12 F -0.16 -6.45 17.26 44.97 0.78 -5.67 16 13 C -0.26 -8.91 10.00 22.43 0.22 -8.69 16 14 C -0.03 -1.05 9.49 22.44 0.21 -0.84 16 15 C -0.15 -6.10 5.51 -19.62 -0.11 -6.21 16 16 C -0.12 -4.48 4.92 -19.99 -0.10 -4.58 16 17 C 0.22 9.50 9.18 85.52 0.79 10.28 16 18 N -0.53 -23.71 10.42 -188.80 -1.97 -25.68 16 19 C 0.23 9.07 8.60 136.85 1.18 10.24 16 20 N -0.35 -11.95 12.68 -52.78 -0.67 -12.62 16 21 N -0.40 -7.53 7.17 -56.23 -0.40 -7.94 16 22 H 0.47 4.06 8.96 -213.46 -1.91 2.15 16 23 C 0.15 2.38 12.10 84.45 1.02 3.40 16 24 C -0.28 -8.22 6.33 -20.24 -0.13 -8.35 16 25 C 0.01 0.39 9.69 23.05 0.22 0.61 16 26 H 0.30 14.28 8.30 -92.71 -0.77 13.51 16 27 H 0.10 4.81 4.80 -2.91 -0.01 4.80 16 28 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.15 3.75 8.03 -2.91 -0.02 3.73 16 30 H 0.15 6.73 7.27 -2.91 -0.02 6.71 16 31 H 0.26 0.62 8.06 -2.91 -0.02 0.59 16 32 H 0.17 3.67 8.05 -2.91 -0.02 3.64 16 Total: -1.00 -71.64 283.41 3.11 -68.53 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -0.77 Total: 10.88 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 4.16 Total: -26.98 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -2.74 Total: -90.40 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.78 Total: -5.67 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Total: -71.64 3.11 -68.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241424993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.180 kcal (2) G-P(sol) polarization free energy of solvation -71.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds