Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86809 * 119.99550 * 2 1 4 4 H 1.48497 * 109.46947 * 275.42059 * 3 2 1 5 5 H 1.48501 * 109.47025 * 35.41910 * 3 2 1 6 6 H 1.48495 * 109.46734 * 155.41757 * 3 2 1 7 7 C 1.39880 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00522 * 341.71495 * 7 2 1 9 9 C 1.41348 * 120.00199 * 161.72324 * 7 2 1 10 10 C 1.40868 * 120.14989 * 330.16277 * 9 7 2 11 11 C 1.37557 * 120.02642 * 180.02562 * 10 9 7 12 12 C 1.38758 * 120.34888 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.84389 * 179.97438 * 12 11 10 14 14 C 1.40023 * 120.31094 * 0.02562 * 12 11 10 15 15 C 1.48342 * 120.01677 * 179.97438 * 14 12 11 16 16 C 1.40534 * 119.87502 * 129.97903 * 15 14 12 17 17 N 1.30625 * 122.42529 * 179.97438 * 16 15 14 18 18 C 1.34297 * 121.52411 * 0.02562 * 17 16 15 19 19 N 1.32048 * 134.15945 * 179.97438 * 18 17 16 20 20 N 1.39895 * 109.12274 * 180.02562 * 19 18 17 21 21 H 0.97002 * 124.99872 * 180.02562 * 20 19 18 22 22 C 1.33868 * 110.00038 * 359.97438 * 20 19 18 23 23 C 1.38376 * 107.78823 * 0.02562 * 22 20 19 24 24 C 1.38366 * 119.87798 * 309.99956 * 15 14 12 25 25 C 1.38688 * 119.96640 * 0.25041 * 14 12 11 26 26 H 0.97002 * 120.00135 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.98406 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.83069 * 180.02562 * 11 10 9 29 29 H 1.07998 * 118.78385 * 359.97438 * 16 15 14 30 30 H 1.08001 * 126.11094 * 179.97438 * 22 20 19 31 31 H 1.08010 * 121.04306 * 359.72471 * 24 15 14 32 32 H 1.08004 * 120.17433 * 179.69684 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3755 2.1127 -1.3938 5 1 1.5019 2.6170 0.8114 6 1 3.5927 1.4100 0.5824 7 6 2.0081 -1.2114 -0.0005 8 1 1.5091 -2.1233 0.2925 9 6 3.3681 -1.2421 -0.3844 10 6 3.8612 -0.3089 -1.3174 11 6 5.1851 -0.3414 -1.6895 12 6 6.0416 -1.2909 -1.1510 13 9 7.3399 -1.3139 -1.5241 14 6 5.5665 -2.2260 -0.2234 15 6 6.4879 -3.2387 0.3479 16 6 6.5453 -3.4270 1.7394 17 7 7.3374 -4.3043 2.2953 18 6 8.1492 -5.0822 1.5609 19 7 9.0283 -6.0246 1.8487 20 7 9.5930 -6.5025 0.6613 21 1 10.2660 -7.1989 0.6062 22 6 9.0672 -5.8581 -0.3876 23 6 8.1471 -4.9443 0.0955 24 6 7.2878 -3.9939 -0.4913 25 6 4.2329 -2.2087 0.1568 26 1 -0.4850 0.8401 0.0004 27 1 3.1994 0.4319 -1.7411 28 1 5.5598 0.3759 -2.4047 29 1 5.9110 -2.8241 2.3723 30 1 9.3170 -6.0214 -1.4255 31 1 7.2512 -3.8627 -1.5627 32 1 3.8618 -2.9315 0.8683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241425019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = 75.959429 kcal Electronic energy + Delta-G solvation = -20542.292357 eV Core-core repulsion = 17190.508605 eV Total energy + Delta-G solvation = -3351.783752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.73804 -41.37195 -38.45893 -37.27666 -33.89549 -32.96544 -31.30175 -30.66961 -30.18583 -28.05961 -25.12830 -24.80820 -23.02768 -21.36108 -20.63265 -20.53486 -18.41557 -17.75283 -17.13061 -16.67142 -15.57288 -15.30689 -15.24237 -15.06790 -14.81048 -14.44633 -13.52644 -13.49071 -13.14962 -12.90667 -12.77791 -12.63026 -12.28038 -12.01334 -11.81349 -11.17779 -10.99183 -10.70089 -10.67504 -10.41431 -10.15343 -9.76110 -9.34571 -9.00761 -8.97765 -8.30860 -7.75984 -7.35319 -7.08701 -4.61401 0.47314 1.56359 2.24775 2.34123 2.46136 2.57036 3.01914 3.13720 3.23307 3.86922 3.99238 4.02082 4.27982 4.35614 4.98028 5.05576 5.13660 5.20498 5.25750 5.47134 5.50045 5.75117 5.88624 6.24327 6.27257 6.40940 6.44737 6.65181 6.72826 6.87823 6.93996 7.15337 7.27794 7.37830 7.42772 7.64323 7.87523 8.17330 8.19433 8.43702 8.62622 9.92885 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.004355 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.114983 B = 6427.456263 C = 6917.150004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.084 3.916 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.438 4.438 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.100 4.100 12 C -0.034 4.034 13 F -0.166 7.166 14 C -0.038 4.038 15 C -0.122 4.122 16 C 0.218 3.782 17 N -0.483 5.483 18 C 0.267 3.733 19 N -0.300 5.300 20 N -0.418 5.418 21 H 0.445 0.555 22 C 0.098 3.902 23 C -0.253 4.253 24 C 0.017 3.983 25 C -0.169 4.169 26 H 0.288 0.712 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.136 0.864 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.616 -6.432 -3.104 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.466 4.466 8 H 0.113 0.887 9 C 0.082 3.918 10 C -0.234 4.234 11 C -0.119 4.119 12 C -0.054 4.054 13 F -0.145 7.145 14 C -0.040 4.040 15 C -0.126 4.126 16 C 0.033 3.967 17 N -0.195 5.195 18 C 0.006 3.994 19 N -0.132 5.132 20 N -0.118 5.118 21 H 0.290 0.710 22 C -0.062 4.062 23 C -0.265 4.265 24 C -0.011 4.011 25 C -0.189 4.189 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.187 0.813 30 H 0.208 0.792 31 H 0.154 0.846 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.095 -7.290 -1.169 15.033 hybrid contribution 0.336 0.987 -1.841 2.116 sum 13.431 -6.302 -3.010 15.139 Atomic orbital electron populations 1.69703 1.08145 1.30577 1.33869 1.26184 0.94747 1.01849 0.90858 0.86347 0.81502 0.79693 0.79030 1.19478 1.21533 1.16443 1.19497 0.92892 0.96313 1.37905 0.88731 1.17671 0.93208 0.90888 0.90012 1.20953 0.94721 1.04587 1.03141 1.20510 0.93846 0.97582 1.00002 1.17148 0.78327 1.03645 1.06312 1.91303 1.35262 1.96753 1.91163 1.18180 0.93495 0.94578 0.97733 1.19453 0.99778 0.99311 0.94076 1.23225 0.90968 0.90283 0.92175 1.67401 1.07416 1.07117 1.37576 1.21413 0.94778 0.94488 0.88757 1.77708 1.16879 1.17745 1.00882 1.46354 1.31567 1.29779 1.04137 0.70986 1.22720 0.95199 0.93940 0.94367 1.20385 1.05538 1.04775 0.95822 1.20983 0.90277 0.90062 0.99748 1.20986 0.90614 1.03471 1.03798 0.90178 0.87303 0.87414 0.81288 0.79154 0.84639 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.05 13.93 55.54 0.77 -19.28 16 2 C 0.08 2.04 5.40 -17.35 -0.09 1.95 16 3 Si 0.91 19.33 24.51 -169.99 -4.17 15.16 16 4 H -0.27 -5.53 6.70 56.52 0.38 -5.15 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.24 -5.25 6.86 56.52 0.39 -4.86 16 7 C -0.44 -10.91 9.56 -37.79 -0.36 -11.27 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.09 1.98 5.10 -106.85 -0.55 1.43 16 10 C -0.21 -4.76 7.16 -38.84 -0.28 -5.04 16 11 C -0.10 -2.06 9.99 -39.64 -0.40 -2.46 16 12 C -0.03 -0.70 7.19 -38.72 -0.28 -0.98 16 13 F -0.17 -3.23 15.87 2.25 0.04 -3.20 16 14 C -0.04 -0.76 5.46 -104.90 -0.57 -1.33 16 15 C -0.12 -2.16 5.32 -104.83 -0.56 -2.72 16 16 C 0.22 3.74 10.57 -17.20 -0.18 3.55 16 17 N -0.48 -8.82 10.42 -11.09 -0.12 -8.94 16 18 C 0.27 4.63 8.60 -156.42 -1.35 3.28 16 19 N -0.30 -4.67 12.69 31.95 0.41 -4.26 16 20 N -0.42 -4.16 7.17 30.84 0.22 -3.94 16 21 H 0.45 2.33 8.96 -182.75 -1.64 0.69 16 22 C 0.10 0.97 12.09 -16.61 -0.20 0.76 16 23 C -0.25 -3.73 6.33 -105.19 -0.67 -4.39 16 24 C 0.02 0.28 9.00 -38.52 -0.35 -0.07 16 25 C -0.17 -3.56 9.21 -38.55 -0.36 -3.91 16 26 H 0.29 6.52 8.30 -40.82 -0.34 6.19 16 27 H 0.11 2.39 4.72 -52.49 -0.25 2.14 16 28 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.17 2.57 8.00 -52.49 -0.42 2.15 16 30 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.14 1.95 7.81 -52.48 -0.41 1.54 16 32 H 0.11 2.25 8.04 -52.48 -0.42 1.83 16 LS Contribution 286.24 15.07 4.31 4.31 Total: -1.00 -29.99 286.24 -8.29 -38.28 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.58 Total: 3.03 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -6.18 Total: -21.18 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 1.28 Total: -36.41 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.16 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.99 -8.29 -38.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241425019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.239 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds