Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86809 * 119.99550 * 2 1 4 4 H 1.48497 * 109.46947 * 275.42059 * 3 2 1 5 5 H 1.48501 * 109.47025 * 35.41910 * 3 2 1 6 6 H 1.48495 * 109.46734 * 155.41757 * 3 2 1 7 7 C 1.39880 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00522 * 341.71495 * 7 2 1 9 9 C 1.41348 * 120.00199 * 161.72324 * 7 2 1 10 10 C 1.40868 * 120.14989 * 330.16277 * 9 7 2 11 11 C 1.37557 * 120.02642 * 180.02562 * 10 9 7 12 12 C 1.38758 * 120.34888 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.84389 * 179.97438 * 12 11 10 14 14 C 1.40023 * 120.31094 * 0.02562 * 12 11 10 15 15 C 1.48342 * 120.01677 * 179.97438 * 14 12 11 16 16 C 1.40534 * 119.87502 * 129.97903 * 15 14 12 17 17 N 1.30625 * 122.42529 * 179.97438 * 16 15 14 18 18 C 1.34297 * 121.52411 * 0.02562 * 17 16 15 19 19 N 1.32048 * 134.15945 * 179.97438 * 18 17 16 20 20 N 1.39895 * 109.12274 * 180.02562 * 19 18 17 21 21 H 0.97002 * 124.99872 * 180.02562 * 20 19 18 22 22 C 1.33868 * 110.00038 * 359.97438 * 20 19 18 23 23 C 1.38376 * 107.78823 * 0.02562 * 22 20 19 24 24 C 1.38366 * 119.87798 * 309.99956 * 15 14 12 25 25 C 1.38688 * 119.96640 * 0.25041 * 14 12 11 26 26 H 0.97002 * 120.00135 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.98406 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.83069 * 180.02562 * 11 10 9 29 29 H 1.07998 * 118.78385 * 359.97438 * 16 15 14 30 30 H 1.08001 * 126.11094 * 179.97438 * 22 20 19 31 31 H 1.08010 * 121.04306 * 359.72471 * 24 15 14 32 32 H 1.08004 * 120.17433 * 179.69684 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3755 2.1127 -1.3938 5 1 1.5019 2.6170 0.8114 6 1 3.5927 1.4100 0.5824 7 6 2.0081 -1.2114 -0.0005 8 1 1.5091 -2.1233 0.2925 9 6 3.3681 -1.2421 -0.3844 10 6 3.8612 -0.3089 -1.3174 11 6 5.1851 -0.3414 -1.6895 12 6 6.0416 -1.2909 -1.1510 13 9 7.3399 -1.3139 -1.5241 14 6 5.5665 -2.2260 -0.2234 15 6 6.4879 -3.2387 0.3479 16 6 6.5453 -3.4270 1.7394 17 7 7.3374 -4.3043 2.2953 18 6 8.1492 -5.0822 1.5609 19 7 9.0283 -6.0246 1.8487 20 7 9.5930 -6.5025 0.6613 21 1 10.2660 -7.1989 0.6062 22 6 9.0672 -5.8581 -0.3876 23 6 8.1471 -4.9443 0.0955 24 6 7.2878 -3.9939 -0.4913 25 6 4.2329 -2.2087 0.1568 26 1 -0.4850 0.8401 0.0004 27 1 3.1994 0.4319 -1.7411 28 1 5.5598 0.3759 -2.4047 29 1 5.9110 -2.8241 2.3723 30 1 9.3170 -6.0214 -1.4255 31 1 7.2512 -3.8627 -1.5627 32 1 3.8618 -2.9315 0.8683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241425019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = 57.539073 kcal Electronic energy + Delta-G solvation = -20543.091124 eV Core-core repulsion = 17190.508605 eV Total energy + Delta-G solvation = -3352.582519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.34961 -42.43330 -39.87230 -38.71493 -35.58135 -34.35489 -32.52000 -31.98463 -31.78732 -29.38840 -26.80061 -26.04958 -24.42565 -22.84343 -22.15196 -21.71773 -19.53288 -19.22229 -18.46737 -18.19771 -17.17677 -16.70202 -16.50682 -16.44730 -16.18217 -16.01722 -15.04171 -14.81353 -14.56587 -14.39522 -14.19542 -13.88004 -13.74794 -13.65907 -13.43471 -12.65369 -12.46608 -12.19049 -12.14410 -12.04279 -11.65271 -11.45278 -11.03434 -10.28137 -10.11224 -9.73794 -9.42001 -8.89375 -8.73740 -6.48001 -0.58294 0.21515 0.64457 0.85565 1.31077 1.37500 1.44599 1.54158 1.63886 2.14247 2.48977 2.82092 2.91839 3.37536 3.39540 3.76347 3.87492 3.99067 4.00190 4.20571 4.25932 4.32009 4.62185 4.67782 4.81877 4.89848 5.07984 5.16442 5.23788 5.45801 5.54219 5.63436 5.69321 5.86410 6.16638 6.18256 6.34032 6.35475 6.67501 6.79366 6.98599 8.18287 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.004355 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.114983 B = 6427.456263 C = 6917.150004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.051 3.949 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.473 4.473 8 H 0.063 0.937 9 C 0.073 3.927 10 C -0.223 4.223 11 C -0.101 4.101 12 C -0.025 4.025 13 F -0.156 7.156 14 C -0.025 4.025 15 C -0.161 4.161 16 C 0.212 3.788 17 N -0.515 5.515 18 C 0.240 3.760 19 N -0.342 5.342 20 N -0.392 5.392 21 H 0.468 0.532 22 C 0.154 3.846 23 C -0.287 4.287 24 C 0.042 3.958 25 C -0.176 4.176 26 H 0.295 0.705 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.172 0.828 30 H 0.256 0.744 31 H 0.154 0.846 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.169 -7.150 -5.276 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.502 4.502 8 H 0.081 0.919 9 C 0.071 3.929 10 C -0.243 4.243 11 C -0.120 4.120 12 C -0.045 4.045 13 F -0.135 7.135 14 C -0.026 4.026 15 C -0.165 4.165 16 C 0.029 3.971 17 N -0.228 5.228 18 C -0.021 4.021 19 N -0.175 5.175 20 N -0.094 5.094 21 H 0.318 0.682 22 C -0.009 4.009 23 C -0.299 4.299 24 C 0.014 3.986 25 C -0.195 4.195 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.156 0.844 29 H 0.189 0.811 30 H 0.272 0.728 31 H 0.172 0.828 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.672 -8.034 -3.326 18.803 hybrid contribution -0.391 0.903 -1.266 1.603 sum 16.281 -7.131 -4.592 18.358 Atomic orbital electron populations 1.69733 1.09222 1.31644 1.36236 1.26791 0.95250 1.04114 0.90292 0.85605 0.79897 0.76684 0.79792 1.17826 1.20613 1.17277 1.19456 0.94182 0.95829 1.40766 0.91902 1.17791 0.92752 0.91949 0.90436 1.21027 0.95647 1.04482 1.03109 1.20783 0.93065 0.97983 1.00164 1.17323 0.78633 1.02987 1.05583 1.91328 1.34551 1.96656 1.90979 1.18284 0.93080 0.94565 0.96714 1.19302 1.01709 1.01004 0.94526 1.23205 0.91106 0.90424 0.92318 1.67304 1.08595 1.08169 1.38755 1.21683 0.95150 0.94920 0.90346 1.77644 1.17810 1.18442 1.03627 1.46424 1.30761 1.29255 1.03009 0.68195 1.23655 0.91023 0.89810 0.96426 1.20652 1.07695 1.06745 0.94795 1.21185 0.88491 0.88661 1.00257 1.21075 0.91251 1.03224 1.03991 0.89442 0.87168 0.84450 0.81075 0.72812 0.82841 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.08 13.93 21.82 0.30 -43.78 16 2 C 0.05 2.59 5.40 85.23 0.46 3.05 16 3 Si 0.96 40.00 24.51 68.60 1.68 41.68 16 4 H -0.25 -9.85 6.70 99.48 0.67 -9.18 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -10.61 6.86 99.48 0.68 -9.93 16 7 C -0.47 -24.86 9.56 23.43 0.22 -24.64 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 C 0.07 3.47 5.10 -21.31 -0.11 3.36 16 10 C -0.22 -9.73 7.16 22.75 0.16 -9.57 16 11 C -0.10 -3.92 9.99 22.23 0.22 -3.69 16 12 C -0.03 -0.97 7.19 22.83 0.16 -0.81 16 13 F -0.16 -5.55 15.87 44.97 0.71 -4.84 16 14 C -0.02 -0.96 5.46 -20.05 -0.11 -1.07 16 15 C -0.16 -5.55 5.32 -20.00 -0.11 -5.66 16 16 C 0.21 7.40 10.57 85.43 0.90 8.31 16 17 N -0.52 -19.06 10.42 -189.00 -1.97 -21.03 16 18 C 0.24 8.02 8.60 136.85 1.18 9.20 16 19 N -0.34 -9.96 12.69 -52.81 -0.67 -10.63 16 20 N -0.39 -6.02 7.17 -56.33 -0.40 -6.43 16 21 H 0.47 2.51 8.96 -213.45 -1.91 0.59 16 22 C 0.15 2.12 12.09 84.42 1.02 3.14 16 23 C -0.29 -7.47 6.33 -20.24 -0.13 -7.60 16 24 C 0.04 1.21 9.00 22.96 0.21 1.42 16 25 C -0.18 -7.55 9.21 22.94 0.21 -7.34 16 26 H 0.30 13.86 8.30 -92.71 -0.77 13.09 16 27 H 0.11 4.74 4.72 -2.91 -0.01 4.72 16 28 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.17 5.52 8.00 -2.91 -0.02 5.49 16 30 H 0.26 0.19 8.06 -2.91 -0.02 0.17 16 31 H 0.15 3.76 7.81 -2.91 -0.02 3.74 16 32 H 0.12 4.81 8.04 -2.91 -0.02 4.79 16 Total: -1.00 -69.07 286.24 3.17 -65.90 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.78 Total: 11.03 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 4.30 Total: -31.89 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.74 Total: -81.87 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.71 Total: -4.84 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.68 Total: 41.68 kcal Total: -69.07 3.17 -65.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241425019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.439 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds