Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47197 * 299.99752 * 3 2 1 6 6 H 1.48505 * 109.47441 * 60.00063 * 3 2 1 7 7 C 1.39920 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 162.79505 * 7 2 1 9 9 C 1.41426 * 120.00120 * 342.79052 * 7 2 1 10 10 C 1.40759 * 120.17182 * 334.76949 * 9 7 2 11 11 C 1.37905 * 119.97026 * 179.97438 * 10 9 7 12 12 F 1.35098 * 119.83444 * 179.72759 * 11 10 9 13 13 C 1.38654 * 120.32828 * 359.97438 * 11 10 9 14 14 C 1.39686 * 120.35268 * 0.02562 * 13 11 10 15 15 C 1.48363 * 119.98914 * 179.97438 * 14 13 11 16 16 C 1.40527 * 119.87374 * 179.97438 * 15 14 13 17 17 N 1.30624 * 122.43406 * 179.97438 * 16 15 14 18 18 C 1.34296 * 121.51397 * 0.02562 * 17 16 15 19 19 N 1.32054 * 134.15922 * 180.02562 * 18 17 16 20 20 N 1.39897 * 109.11977 * 179.97438 * 19 18 17 21 21 H 0.96998 * 124.99389 * 180.02562 * 20 19 18 22 22 C 1.33861 * 110.00426 * 359.97438 * 20 19 18 23 23 C 1.38370 * 107.78747 * 0.02562 * 22 20 19 24 24 C 1.38358 * 119.87969 * 359.72442 * 15 14 13 25 25 C 1.38802 * 120.01720 * 359.97438 * 14 13 11 26 26 H 0.97008 * 119.99620 * 359.97438 * 1 2 3 27 27 H 1.07993 * 120.01432 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.82191 * 180.02562 * 13 11 10 29 29 H 1.08001 * 118.78241 * 359.97438 * 16 15 14 30 30 H 1.08006 * 126.10601 * 179.97438 * 22 20 19 31 31 H 1.08001 * 121.03731 * 0.02562 * 24 15 14 32 32 H 1.07998 * 120.16384 * 179.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0517 -1.2329 -0.2761 9 6 1.3482 -2.4090 0.3634 10 6 0.2192 -2.3681 1.2030 11 6 -0.4212 -3.5379 1.5538 12 9 -1.5013 -3.4960 2.3643 13 6 0.0410 -4.7574 1.0831 14 6 1.1602 -4.8139 0.2491 15 6 1.6482 -6.1232 -0.2495 16 6 2.7740 -6.1771 -1.0888 17 7 3.2464 -7.3018 -1.5559 18 6 2.6764 -8.4805 -1.2574 19 7 2.9346 -9.7350 -1.5791 20 7 1.9914 -10.5681 -0.9680 21 1 1.9668 -11.5343 -1.0499 22 6 1.1288 -9.8359 -0.2527 23 6 1.4922 -8.5072 -0.3835 24 6 0.9963 -7.2870 0.1176 25 6 1.8158 -3.6453 -0.1131 26 1 -0.4850 0.8401 0.0004 27 1 -0.1459 -1.4209 1.5716 28 1 -0.4671 -5.6686 1.3626 29 1 3.2669 -5.2544 -1.3575 30 1 0.2970 -10.2146 0.3229 31 1 0.1321 -7.2608 0.7649 32 1 2.6816 -3.6862 -0.7574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241426893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = 74.200366 kcal Electronic energy + Delta-G solvation = -20245.462491 eV Core-core repulsion = 16893.602460 eV Total energy + Delta-G solvation = -3351.860031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.71961 -41.35227 -38.50897 -36.99722 -34.12617 -32.70239 -31.19510 -30.43719 -29.68141 -27.64050 -25.79646 -24.66072 -22.88598 -21.28494 -20.55179 -20.24151 -18.31057 -17.76206 -17.10900 -16.10547 -15.54336 -15.19657 -15.17271 -14.77069 -14.39707 -14.31685 -14.28685 -13.41117 -13.23192 -12.80003 -12.74424 -12.25022 -12.03063 -11.70015 -11.30481 -11.17716 -11.15879 -10.86073 -10.59224 -10.29937 -10.13738 -9.76623 -9.33920 -8.96599 -8.95697 -8.30527 -7.57673 -7.02728 -6.88127 -4.57419 0.47966 1.53404 2.33363 2.48723 2.57753 2.89727 3.02571 3.07344 3.11191 3.83310 4.02625 4.10305 4.38311 4.50346 4.99431 5.08059 5.17553 5.26985 5.43843 5.47536 5.72227 5.91361 6.12242 6.32749 6.39727 6.48229 6.70534 6.85623 6.90582 6.92288 7.07403 7.38477 7.45428 7.54107 7.63413 7.78970 8.04959 8.21958 8.41051 8.67960 8.69498 10.02307 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004076 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.068957 B = 6867.390307 C = 7872.248020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.454 4.454 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.194 4.194 11 C 0.107 3.893 12 F -0.166 7.166 13 C -0.265 4.265 14 C 0.000 4.000 15 C -0.110 4.110 16 C 0.212 3.788 17 N -0.482 5.482 18 C 0.264 3.736 19 N -0.299 5.299 20 N -0.419 5.419 21 H 0.445 0.555 22 C 0.093 3.907 23 C -0.250 4.250 24 C -0.005 4.005 25 C -0.213 4.213 26 H 0.284 0.716 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.173 0.827 30 H 0.191 0.809 31 H 0.138 0.862 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -12.152 0.989 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.214 4.214 11 C 0.088 3.912 12 F -0.145 7.145 13 C -0.285 4.285 14 C -0.001 4.001 15 C -0.114 4.114 16 C 0.028 3.972 17 N -0.194 5.194 18 C 0.002 3.998 19 N -0.132 5.132 20 N -0.119 5.119 21 H 0.290 0.710 22 C -0.067 4.067 23 C -0.262 4.262 24 C -0.033 4.033 25 C -0.233 4.233 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.189 0.811 30 H 0.208 0.792 31 H 0.156 0.844 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.160 -12.999 -0.271 13.053 hybrid contribution -1.378 0.764 1.105 1.924 sum -0.217 -12.235 0.834 12.265 Atomic orbital electron populations 1.69818 1.07723 1.29665 1.33747 1.25977 0.94770 1.01681 0.92006 0.86207 0.81042 0.80553 0.78702 1.18136 1.19842 1.19596 1.19654 0.98180 0.90803 1.39677 0.89601 1.17275 0.90099 0.92195 0.87814 1.21378 1.00776 0.96019 1.03262 1.17535 0.85402 0.95037 0.93217 1.91341 1.53968 1.97569 1.71664 1.20209 1.02871 0.95205 1.10248 1.17827 0.95115 0.90109 0.97061 1.19605 0.97495 0.93768 1.00530 1.23309 0.90588 0.95094 0.88248 1.67424 1.31088 0.95500 1.25353 1.21432 0.91956 0.91807 0.94598 1.77697 1.12462 0.99604 1.23416 1.46336 1.20727 1.10287 1.34596 0.71044 1.22693 0.96017 0.91219 0.96777 1.20399 1.02982 0.93835 1.08975 1.21012 0.97644 0.88962 0.95633 1.21120 1.03855 0.91688 1.06634 0.90514 0.85261 0.87923 0.81068 0.79238 0.84429 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.29 10.96 55.55 0.61 -18.68 16 2 C 0.07 1.76 5.14 -17.35 -0.09 1.67 16 3 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.10 9.05 -37.74 -0.34 -11.45 16 8 H 0.09 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.17 5.56 -106.88 -0.59 2.58 16 10 C -0.19 -4.84 8.66 -38.75 -0.34 -5.18 16 11 C 0.11 2.49 7.28 -39.55 -0.29 2.21 16 12 F -0.17 -3.75 17.26 2.25 0.04 -3.71 16 13 C -0.27 -5.57 9.40 -38.89 -0.37 -5.93 16 14 C 0.00 0.00 5.87 -104.98 -0.62 -0.62 16 15 C -0.11 -1.95 5.88 -104.82 -0.62 -2.57 16 16 C 0.21 3.67 10.52 -17.20 -0.18 3.49 16 17 N -0.48 -8.83 10.43 -11.09 -0.12 -8.95 16 18 C 0.26 4.57 8.60 -156.42 -1.35 3.22 16 19 N -0.30 -4.67 12.69 31.96 0.41 -4.26 16 20 N -0.42 -4.17 7.17 30.84 0.22 -3.95 16 21 H 0.44 2.35 8.96 -182.75 -1.64 0.71 16 22 C 0.09 0.91 12.09 -16.62 -0.20 0.71 16 23 C -0.25 -3.65 6.33 -105.19 -0.67 -4.31 16 24 C 0.00 -0.07 9.58 -38.52 -0.37 -0.44 16 25 C -0.21 -4.68 9.16 -38.52 -0.35 -5.03 16 26 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 27 H 0.13 3.37 6.18 -52.49 -0.32 3.05 16 28 H 0.10 1.88 6.19 -52.48 -0.32 1.56 16 29 H 0.17 2.66 6.09 -52.49 -0.32 2.34 16 30 H 0.19 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.14 1.86 6.22 -52.49 -0.33 1.53 16 32 H 0.11 2.08 6.13 -52.49 -0.32 1.76 16 LS Contribution 286.56 15.07 4.32 4.32 Total: -1.00 -30.33 286.56 -9.14 -39.47 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.23 Total: 4.90 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -6.36 Total: -21.65 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 1.12 Total: -35.85 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.33 -9.14 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241426893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.667 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds