Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47197 * 299.99752 * 3 2 1 6 6 H 1.48505 * 109.47441 * 60.00063 * 3 2 1 7 7 C 1.39920 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 162.79505 * 7 2 1 9 9 C 1.41426 * 120.00120 * 342.79052 * 7 2 1 10 10 C 1.40759 * 120.17182 * 334.76949 * 9 7 2 11 11 C 1.37905 * 119.97026 * 179.97438 * 10 9 7 12 12 F 1.35098 * 119.83444 * 179.72759 * 11 10 9 13 13 C 1.38654 * 120.32828 * 359.97438 * 11 10 9 14 14 C 1.39686 * 120.35268 * 0.02562 * 13 11 10 15 15 C 1.48363 * 119.98914 * 179.97438 * 14 13 11 16 16 C 1.40527 * 119.87374 * 179.97438 * 15 14 13 17 17 N 1.30624 * 122.43406 * 179.97438 * 16 15 14 18 18 C 1.34296 * 121.51397 * 0.02562 * 17 16 15 19 19 N 1.32054 * 134.15922 * 180.02562 * 18 17 16 20 20 N 1.39897 * 109.11977 * 179.97438 * 19 18 17 21 21 H 0.96998 * 124.99389 * 180.02562 * 20 19 18 22 22 C 1.33861 * 110.00426 * 359.97438 * 20 19 18 23 23 C 1.38370 * 107.78747 * 0.02562 * 22 20 19 24 24 C 1.38358 * 119.87969 * 359.72442 * 15 14 13 25 25 C 1.38802 * 120.01720 * 359.97438 * 14 13 11 26 26 H 0.97008 * 119.99620 * 359.97438 * 1 2 3 27 27 H 1.07993 * 120.01432 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.82191 * 180.02562 * 13 11 10 29 29 H 1.08001 * 118.78241 * 359.97438 * 16 15 14 30 30 H 1.08006 * 126.10601 * 179.97438 * 22 20 19 31 31 H 1.08001 * 121.03731 * 0.02562 * 24 15 14 32 32 H 1.07998 * 120.16384 * 179.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0517 -1.2329 -0.2761 9 6 1.3482 -2.4090 0.3634 10 6 0.2192 -2.3681 1.2030 11 6 -0.4212 -3.5379 1.5538 12 9 -1.5013 -3.4960 2.3643 13 6 0.0410 -4.7574 1.0831 14 6 1.1602 -4.8139 0.2491 15 6 1.6482 -6.1232 -0.2495 16 6 2.7740 -6.1771 -1.0888 17 7 3.2464 -7.3018 -1.5559 18 6 2.6764 -8.4805 -1.2574 19 7 2.9346 -9.7350 -1.5791 20 7 1.9914 -10.5681 -0.9680 21 1 1.9668 -11.5343 -1.0499 22 6 1.1288 -9.8359 -0.2527 23 6 1.4922 -8.5072 -0.3835 24 6 0.9963 -7.2870 0.1176 25 6 1.8158 -3.6453 -0.1131 26 1 -0.4850 0.8401 0.0004 27 1 -0.1459 -1.4209 1.5716 28 1 -0.4671 -5.6686 1.3626 29 1 3.2669 -5.2544 -1.3575 30 1 0.2970 -10.2146 0.3229 31 1 0.1321 -7.2608 0.7649 32 1 2.6816 -3.6862 -0.7574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241426893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = 56.337992 kcal Electronic energy + Delta-G solvation = -20246.237062 eV Core-core repulsion = 16893.602460 eV Total energy + Delta-G solvation = -3352.634602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.52037 -42.41394 -39.89564 -38.48594 -35.77459 -34.07584 -32.36556 -31.80204 -31.32303 -29.02468 -27.48827 -25.93310 -24.26613 -22.77479 -22.08972 -21.48769 -19.50174 -19.17689 -18.34219 -17.78526 -16.98337 -16.71436 -16.40864 -16.27386 -16.16984 -15.90022 -15.73125 -14.75811 -14.43972 -14.19172 -13.95206 -13.78341 -13.66555 -13.34201 -12.88458 -12.73370 -12.55419 -12.19799 -12.10870 -11.88169 -11.65070 -11.46488 -11.03191 -10.17418 -10.13196 -9.72039 -9.33719 -8.68274 -8.43428 -6.41663 -0.56978 0.18280 0.83882 1.15240 1.41167 1.43684 1.57401 1.59469 1.66981 2.22116 2.61042 2.95077 2.97693 3.41426 3.66097 3.70282 3.92966 4.00427 4.14828 4.29858 4.33255 4.57646 4.63492 4.83990 4.98696 5.08708 5.12052 5.19756 5.33805 5.56497 5.70211 5.78333 5.93437 6.00337 6.19847 6.29700 6.38531 6.60853 6.88283 6.90056 7.02917 8.30156 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004076 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.068957 B = 6867.390307 C = 7872.248020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.488 4.488 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.227 4.227 11 C 0.097 3.903 12 F -0.165 7.165 13 C -0.261 4.261 14 C 0.017 3.983 15 C -0.152 4.152 16 C 0.208 3.792 17 N -0.516 5.516 18 C 0.237 3.763 19 N -0.343 5.343 20 N -0.394 5.394 21 H 0.467 0.533 22 C 0.153 3.847 23 C -0.286 4.286 24 C 0.032 3.968 25 C -0.228 4.228 26 H 0.289 0.711 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.172 0.828 30 H 0.257 0.743 31 H 0.164 0.836 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -15.309 1.531 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.517 4.517 8 H 0.107 0.893 9 C 0.103 3.897 10 C -0.248 4.248 11 C 0.078 3.922 12 F -0.144 7.144 13 C -0.281 4.281 14 C 0.016 3.984 15 C -0.156 4.156 16 C 0.025 3.975 17 N -0.229 5.229 18 C -0.024 4.024 19 N -0.177 5.177 20 N -0.096 5.096 21 H 0.317 0.683 22 C -0.010 4.010 23 C -0.298 4.298 24 C 0.004 3.996 25 C -0.247 4.247 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.155 0.845 29 H 0.189 0.811 30 H 0.273 0.727 31 H 0.182 0.818 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.402 -16.196 0.254 16.203 hybrid contribution -1.219 1.285 0.948 2.009 sum -0.817 -14.911 1.202 14.981 Atomic orbital electron populations 1.69886 1.09200 1.30773 1.34833 1.26809 0.95413 1.04778 0.91044 0.85140 0.79683 0.76063 0.78781 1.17661 1.19160 1.19217 1.19935 0.98577 0.91854 1.41309 0.89328 1.17587 0.90430 0.93465 0.88177 1.21272 1.02282 0.95930 1.05283 1.17720 0.85478 0.95531 0.93498 1.91331 1.53846 1.97615 1.71619 1.20529 1.02783 0.95422 1.09384 1.18030 0.93992 0.91032 0.95388 1.19366 0.99452 0.93209 1.03582 1.23254 0.90741 0.95130 0.88382 1.67327 1.32419 0.96365 1.26739 1.21710 0.93210 0.91923 0.95521 1.77644 1.14938 0.99527 1.25558 1.46426 1.19134 1.11333 1.32692 0.68262 1.23665 0.95114 0.88953 0.93272 1.20683 1.03198 0.95705 1.10204 1.21300 0.96618 0.88470 0.93202 1.21338 1.04652 0.91622 1.07094 0.89984 0.87501 0.84548 0.81072 0.72735 0.81822 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.24 10.96 21.82 0.24 -42.00 16 2 C 0.04 1.72 5.14 85.25 0.44 2.16 16 3 Si 0.98 36.98 29.59 68.60 2.03 39.01 16 4 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.49 -25.00 9.05 23.46 0.21 -24.79 16 8 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 9 C 0.11 5.47 5.56 -21.32 -0.12 5.35 16 10 C -0.23 -11.89 8.66 22.81 0.20 -11.69 16 11 C 0.10 4.56 7.28 22.29 0.16 4.73 16 12 F -0.17 -7.47 17.26 44.97 0.78 -6.69 16 13 C -0.26 -10.67 9.40 22.72 0.21 -10.46 16 14 C 0.02 0.67 5.87 -20.10 -0.12 0.56 16 15 C -0.15 -5.22 5.88 -19.99 -0.12 -5.34 16 16 C 0.21 7.28 10.52 85.43 0.90 8.17 16 17 N -0.52 -19.03 10.43 -189.00 -1.97 -21.00 16 18 C 0.24 7.85 8.60 136.84 1.18 9.03 16 19 N -0.34 -9.92 12.69 -52.81 -0.67 -10.59 16 20 N -0.39 -5.89 7.17 -56.33 -0.40 -6.30 16 21 H 0.47 2.38 8.96 -213.45 -1.91 0.47 16 22 C 0.15 1.99 12.09 84.42 1.02 3.01 16 23 C -0.29 -7.20 6.33 -20.24 -0.13 -7.33 16 24 C 0.03 0.87 9.58 22.96 0.22 1.09 16 25 C -0.23 -10.31 9.16 22.96 0.21 -10.10 16 26 H 0.29 13.46 8.30 -92.70 -0.77 12.69 16 27 H 0.11 5.96 6.18 -2.91 -0.02 5.94 16 28 H 0.14 4.52 6.19 -2.91 -0.02 4.50 16 29 H 0.17 5.62 6.09 -2.91 -0.02 5.61 16 30 H 0.26 -0.04 8.06 -2.91 -0.02 -0.07 16 31 H 0.16 3.53 6.22 -2.91 -0.02 3.51 16 32 H 0.12 4.89 6.13 -2.91 -0.02 4.87 16 Total: -1.00 -71.56 286.56 3.57 -67.99 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.70 Total: 15.21 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 4.27 Total: -35.62 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.81 Total: -79.89 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.78 Total: -6.69 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -71.56 3.57 -67.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241426893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.323 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds