Wall clock time and date at job start Tue Mar 31 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48499 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47344 * 299.99959 * 3 2 1 6 6 H 1.48495 * 109.47116 * 59.99985 * 3 2 1 7 7 C 1.39894 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99949 * 163.47468 * 7 2 1 9 9 C 1.41382 * 119.99576 * 343.46938 * 7 2 1 10 10 C 1.40815 * 120.56412 * 155.72850 * 9 7 2 11 11 N 1.31508 * 120.69575 * 180.02562 * 10 9 7 12 12 C 1.32147 * 122.08554 * 0.02562 * 11 10 9 13 13 F 1.35099 * 119.46435 * 180.02562 * 12 11 10 14 14 C 1.40103 * 121.07608 * 359.97438 * 12 11 10 15 15 C 1.48328 * 120.42218 * 180.02562 * 14 12 11 16 16 C 1.39865 * 119.90513 * 129.70847 * 15 14 12 17 17 C 1.36347 * 120.54300 * 179.71971 * 16 15 14 18 18 C 1.39886 * 120.04685 * 0.55050 * 17 16 15 19 19 N 1.35749 * 133.42201 * 179.72431 * 18 17 16 20 20 C 1.30127 * 109.67601 * 180.02562 * 19 18 17 21 21 N 1.36032 * 110.11786 * 359.97438 * 20 19 18 22 22 H 0.97000 * 126.36124 * 179.97438 * 21 20 19 23 23 C 1.38123 * 107.28170 * 0.02562 * 21 20 19 24 24 C 1.38600 * 134.02371 * 180.02562 * 23 21 20 25 25 C 1.39030 * 119.15260 * 0.02562 * 14 12 11 26 26 H 0.97001 * 119.99912 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.65288 * 359.74647 * 10 9 7 28 28 H 1.07996 * 119.72953 * 359.97438 * 16 15 14 29 29 H 1.07998 * 119.97571 * 180.27795 * 17 16 15 30 30 H 1.08008 * 124.93659 * 179.97438 * 20 19 18 31 31 H 1.07995 * 120.20428 * 359.96970 * 24 23 21 32 32 H 1.08007 * 120.93317 * 179.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0081 -1.2115 -0.0005 8 1 3.0546 -1.2307 -0.2666 9 6 1.3449 -2.4107 0.3473 10 6 1.8236 -3.6529 -0.1118 11 7 1.2084 -4.7698 0.2097 12 6 0.1263 -4.7820 0.9680 13 9 -0.4631 -5.9605 1.2661 14 6 -0.4193 -3.5927 1.4689 15 6 -1.6342 -3.6232 2.3192 16 6 -1.6482 -2.9410 3.5401 17 6 -2.7599 -2.9556 4.3294 18 6 -3.8955 -3.6662 3.9266 19 7 -5.1171 -3.8666 4.4836 20 6 -5.8372 -4.6175 3.7021 21 7 -5.1284 -4.9503 2.5897 22 1 -5.4381 -5.5013 1.8540 23 6 -3.8854 -4.3589 2.7031 24 6 -2.7539 -4.3342 1.9030 25 6 0.1927 -2.3835 1.1586 26 1 -0.4850 0.8401 0.0004 27 1 2.7025 -3.6882 -0.7383 28 1 -0.7726 -2.3946 3.8584 29 1 -2.7622 -2.4219 5.2682 30 1 -6.8504 -4.9308 3.9068 31 1 -2.7419 -4.8647 0.9624 32 1 -0.2036 -1.4495 1.5289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241704873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:27 Heat of formation + Delta-G solvation = 47.756895 kcal Electronic energy + Delta-G solvation = -20730.724475 eV Core-core repulsion = 17377.717768 eV Total energy + Delta-G solvation = -3353.006706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.61102 -41.82850 -38.55949 -36.88201 -34.22445 -33.03615 -31.61222 -30.35781 -29.66346 -27.78931 -25.57200 -23.27421 -22.82328 -21.62264 -21.28917 -20.62875 -17.88310 -17.59383 -16.69420 -16.58576 -15.95425 -15.44758 -15.02058 -14.84365 -14.69773 -14.06049 -13.58007 -13.54827 -13.30318 -12.66025 -12.37407 -12.20325 -11.85216 -11.72510 -11.56172 -11.39637 -11.25529 -11.15869 -10.72970 -10.54605 -10.15413 -9.83800 -9.54037 -8.72620 -8.46558 -8.11379 -7.89860 -7.37323 -7.05048 -4.66806 1.14286 1.78244 2.30424 2.61797 2.94354 2.97531 3.00324 3.03462 3.08761 3.72354 4.16478 4.34640 4.41211 4.84258 5.04018 5.26833 5.31933 5.39578 5.60519 5.70614 5.72240 5.95433 6.10629 6.35554 6.47089 6.56450 6.66827 6.72917 6.86793 6.92235 7.04270 7.14073 7.42287 7.45112 7.59059 7.72008 7.99652 8.17461 8.43153 8.44789 9.17553 9.86317 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.005163 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.986863 B = 5421.462917 C = 6487.584867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.439 4.439 8 H 0.089 0.911 9 C 0.054 3.946 10 C 0.011 3.989 11 N -0.489 5.489 12 C 0.163 3.837 13 F -0.146 7.146 14 C -0.101 4.101 15 C 0.009 3.991 16 C -0.107 4.107 17 C -0.069 4.069 18 C 0.035 3.965 19 N -0.498 5.498 20 C 0.247 3.753 21 N -0.605 5.605 22 H 0.421 0.579 23 C 0.052 3.948 24 C -0.100 4.100 25 C -0.094 4.094 26 H 0.287 0.713 27 H 0.139 0.861 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.212 0.788 31 H 0.122 0.878 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -2.300 3.795 8.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.151 4.151 11 N -0.201 5.201 12 C 0.009 3.991 13 F -0.126 7.126 14 C -0.105 4.105 15 C 0.007 3.993 16 C -0.127 4.127 17 C -0.089 4.089 18 C -0.083 4.083 19 N -0.218 5.218 20 C -0.040 4.040 21 N -0.217 5.217 22 H 0.259 0.741 23 C -0.057 4.057 24 C -0.121 4.121 25 C -0.120 4.120 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.228 0.772 31 H 0.140 0.860 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.828 -2.590 4.330 9.313 hybrid contribution -0.215 0.640 -0.945 1.161 sum -8.043 -1.950 3.385 8.941 Atomic orbital electron populations 1.69775 1.07749 1.30106 1.33091 1.26025 0.94858 1.01905 0.91948 0.86125 0.80963 0.80132 0.78893 1.18048 1.19710 1.19387 1.19611 0.98000 0.90417 1.38760 0.89290 1.18497 0.92254 0.93859 0.90413 1.22312 1.02006 0.86579 1.04166 1.66271 1.07590 1.33710 1.12532 1.17520 0.95691 0.79660 1.06237 1.91398 1.82475 1.46546 1.92133 1.19087 0.96241 0.93609 1.01538 1.18454 0.92111 0.95219 0.93529 1.20778 0.98216 0.99966 0.93728 1.19865 0.90240 0.98715 1.00054 1.19029 0.93758 1.02411 0.93058 1.70356 1.03359 1.18146 1.29941 1.25206 0.98805 0.96520 0.83484 1.43114 1.12099 1.45119 1.21340 0.74051 1.18773 0.87642 1.00506 0.98827 1.19951 0.90241 1.02412 0.99541 1.21757 0.96909 0.95475 0.97810 0.90166 0.84379 0.85051 0.85501 0.77183 0.85983 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.33 10.90 55.54 0.61 -17.72 16 2 C 0.07 1.63 5.19 -17.35 -0.09 1.54 16 3 Si 0.92 16.79 29.59 -169.99 -5.03 11.76 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.34 9.08 -37.77 -0.34 -10.69 16 8 H 0.09 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.05 1.33 5.59 -106.71 -0.60 0.73 16 10 C 0.01 0.25 10.96 -16.72 -0.18 0.07 16 11 N -0.49 -12.03 10.33 -12.57 -0.13 -12.16 16 12 C 0.16 3.90 8.30 -16.72 -0.14 3.76 16 13 F -0.15 -3.34 15.90 2.25 0.04 -3.30 16 14 C -0.10 -2.30 5.47 -104.75 -0.57 -2.87 16 15 C 0.01 0.19 5.33 -104.85 -0.56 -0.37 16 16 C -0.11 -1.93 9.44 -39.65 -0.37 -2.30 16 17 C -0.07 -1.17 10.03 -39.65 -0.40 -1.56 16 18 C 0.03 0.60 7.23 -84.63 -0.61 -0.01 16 19 N -0.50 -7.86 11.27 -11.99 -0.14 -7.99 16 20 C 0.25 2.85 12.97 -89.77 -1.16 1.69 16 21 N -0.60 -7.31 6.23 -11.77 -0.07 -7.39 16 22 H 0.42 3.54 8.96 -40.82 -0.37 3.18 16 23 C 0.05 0.86 7.29 -84.01 -0.61 0.24 16 24 C -0.10 -1.86 8.88 -39.16 -0.35 -2.20 16 25 C -0.09 -2.25 8.27 -38.27 -0.32 -2.57 16 26 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 27 H 0.14 2.94 8.06 -52.49 -0.42 2.52 16 28 H 0.13 2.22 8.04 -52.49 -0.42 1.80 16 29 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.21 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.12 2.21 7.78 -52.49 -0.41 1.80 16 32 H 0.14 3.40 6.20 -52.48 -0.33 3.07 16 LS Contribution 290.92 15.07 4.38 4.38 Total: -1.00 -29.32 290.92 -8.99 -38.31 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -2.34 Total: 8.64 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -6.31 Total: -14.54 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.27 Total: -45.26 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.32 -8.99 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241704873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.071 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds